CmoCh04G004330 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G004330
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionPolyadenylate-binding protein 2
LocationCmo_Chr04 : 2148984 .. 2153576 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAACTCACTTAGCGTGGAAGAGGAGAGGGAGATAAACTCAGAAAGACGAAGGGGCGGAGGGACGGAGGAGAATCCATGGAGCACGAAGACTTCGACATGATTGGCTCGGACCTCAACGATACGGCGGTTCGTTTTTCCTTTTCAATCCTTTTTCTCTTTTATTTCGATTCTTATTCATCAGTCCTTGACTACTTTCAGCCTACTATAAACCCTAATTCCTTTCTTTTCTCGTGCTTTGTGCCTTGTAATCGGCTTTCAGGAGTTGGACGACATGACGAAACGGTTGAAAGAGATGGAAAGTGAAGCTGCTGCCCTACGTGAGATGCAGGCCAAGGTCGAGAAGGAGATGAGTTCTCTACAAGGTTGGTTTCTGCTCTTCTTCGCTTTTGTGAGGTTTTTTTTGTGTTTTTGTGAAGCCTGTCCGGTGTGTGCTTATTTAAGATTGTCTTTCATGGATCCTTTTTAGTGAATACTGAATTAGTAAGTCGAGTTTTGGGCTGGAATTGGTATTTCTTTGATCCTGAAGGTCGTCTTTTGATCGGATGCGAACTGAAAATGTTTAGGAAATACCTAATCTTGGAAGAACTAGGTGCATTTGGATTTTGTATTGGAGCGATGCAGTAACTGAGCAACCGGATTTTGGACTATCCGCTATTTAGAGATGATTAGTTTTCATCTTGATCATAGTGGTAGTTTCTAATTAAGAGAAGTTGGCTAGTGTACTGATTTTTGTTCTTTGAAAAAAATACCAACTTTGGGATTGAGATCAGAATCGTAGTCATGTCAATTATGGAGACTTTCTTCTGTGTTGATTATCCAGTACATGTTTTTTTACCTAAATACATACGCTTACTTGAAAAGTTCAAATTTGTCTGTTATCGTCAAATATTTCACCACTTTTTGTTTCGCTAGATCCAGCAAGTTCTGCTGCAAGTCAAGCAAACAGGGAGGAAGTGGATGCACGGTCAGTGTTTGTTGGCAATGTACGTTCTCTTTATCCCTGACTAACATTATTATTTTTTTCATATTAATGCTGTTGTGTCGCTTGCTTTGTCACTCATACTACATGATTAGTTGAATTTTGATTTATGGGTGAAGGGATTCTTTTTGTCCATGTTAAATTCTTGAACAATATCAGCTTTGTTTCTGTTAGAGACTTAGCTCACCTAAAGAGGAAGGCTATACATTTCCATTTAATGACAAACTAACCGATTCTTATATCTTCACAATGTATGACATTGGGGGGCCTCTTTTGGTTTTTTGTATGGGGTGTAGCTAGTTCGTATAGAGGGCTGGATTCCAGTTATTCTTTCTTTCATGAAATCAAGTCATGTGCGGTTAATTTCAATTTGTGATTGGAATGCAGCCATCAATTTATCAACTCTAGTAGCTTACGGAGGGAAACACATGAATGCCATTAATTTAACCCTTCTCTCCATTTTCTTAGTTGTTTCATTGTTTGAAATACTTTAACATTAATTTTTTACACTACCTCATATTATTACAGAATTTGTTAGTTCTAACATTTTAAGTCGTTATGATGGGGAAGCTTAGACTTGTTCTTCTTTTAGAGAAGGTACCTACAGAAAACTATGTTCTTTGTTTAACAATTAAAAGAGTTTTTTGAGATTGGTTTTCTTTGAGTCCGTTTATTTAATTCTTGCACTTCAACTAACTGACCTTCATTCCTTGGGGGTCTGTTCATTCCCAGTAGGGTCATTAAGGTTTATTGAATTTCAGTTAGCCATGAGTTTTTGTTTATTTTGGTACATATCATTCATGTCTTTGGAAGAGGTAGGATGATGCCTTCCATTTTGAGGATGTTGATCCGTTGGTTGCAAGCAGTACTATTTTAGTGATGTTAGGAGGGATCATTGTATTATTATCTATCGCTCTTCCTTTTAAGAGCTTTGAGGCCCATAACTACTTATGTTCCATGGGACATTTTCTTTAGAGATTATTGCTATAAACTCAATTCAGAGAGTTTCTATTTAAGTTTTATAGATGACCCATTCCTGCACTGTGCTTGAAATTTTTAGCATGCTGGTGTTTCTAGCCTCATTTGACTCCTGTGTTTGACTGCAATTACAGGCTAGGCTTACTTCATCAGGTTTTCTGATTACCAATTGCTGAAGTTGGAAATTCTCTGATATGTTATAAACTACCTATCTATATTTTAAAAAAGTGTCTTGTCCTAAAAAAAGGAGTAGATAAAAAAAAAAGGTGATAAATTCCAGGTGTAAAATTTTCAAGAGGGTAGAAGTTCGGTTGAATCCTTTGAAAAGAGAGTGTGGGAAAATGTTGAGATGAGTTAACCAGAAGAAAAGATATACCTAAATGTCTTGTAGTTTGTCGTGCCTTGTTGGCTGATTGGGTGGGCTGGGATTCTGTCAATATAACATGTCTCAAGTTCGAGGCCATGTGGGTAATGTGGAAAGGGGATTGGTAAAAAAAGAAGAGAGCAAACTCACTAGAATAAGGGTATGCTCGACTATGGATAAAGTCAGCAGAAGTTTTACTGGTTTGCTTGATTGAACTGGAATGAGGAGAGGACTCGACAAGTGTTGAAGGGAAGTTATGTGCATTCATAACTAAGGAGGACTAGCTATGGCGCTAAGGTATGTTATTGTCTTGTGTTGAAGCCAGCATTGGTGACTACTGTTCCAGTTTTGTTTAAGTGATTTACAATCTATGGTGAGGGCCTCCAAATATCTCTCATTATGCTGTCTCCCCACCCTTAATCCATCAAGGAAAGGAAAAATGCAAAAGTAGGGAAGCTTTTATGTTTCTATGTCTACTTTTGGGAATTACTCACTTTTTCCTTGTAATTAGCCCACGCAGTCAATTTTAACTTTAAAGCTTTCGAATAGGTTATGAAATTAATACCTTCCTTAGTATGAAATCAGAAAAATGGTAAGTAATTAACCAATACATTGTCATTGTCGTGTGATGAACACACATTCTATTATAATCACGTGTCAAAAAAATTATTAGTCATCCAGGATTTACAAGAACGAATATGAAGGAATTAGAGTTACATGGTGGTTGATTGTCCTCTTGTGAATGGGCGAATTGGAATTATTAGGGGACCTATTGTTATGAATGATTGGAACCCAACTTGGTTCTTTACAGGGTTGATGTGTATAATACGTATTCATTTCAGTGAATATTTGATATTTTTATGTGAAGAAGATAGCTGAGAGATTGTGTAGAACTTGTGACAACAGACTTGCTGCTTATATTTCAATTAATAACTTGCTTTCCTGAAGAAAATTTCTCCATACAGTAATTATTAATATGTGTGCTGTATTTTATTGATTAAAAAATATTAGTGAGATTTACTTTATATTAATATTTATATAAAATAAGTAAACTAATAGAAATTGACTATGCAAGCCCTTTTTTGTTGCTTTTTTCGTGATATGATAAATGTTTTAAGCTTCAATTGGAACAGGTTGACTACTCATGTACCCCAGAAGAAGTACAGCAACATTTCCAGACATGTGGAACTGTAAACAGAATTACTATTCGCACAGATAAGTTTGGGCAGCCGAAGGGTTACGCGTATGTTGAATTCCTTGAGCCCGAAGCTGTTCAAGAGGCTCTTCTTCTGAATGAATCAGAACTACATGGTCGACAGCTGAAGGTGAACTTAATAAATTACTTGATTAGTGGTAGTTTAAGATTCTCCTACTGCACATTGTCGGACAAAACTGAATTTATATGTTGTAGGTAACTGCCAAGAGGACAAACATACCTGGGATGAAGCAGTATCGTCCACGCCGACCCAACTCATTTATGGGTGCTCAATCCAGGAGCCCATATGTTGCTGCTCCTTATTTCTTCGCACCATATGGATATGGGTATGATTATTCAATACAAATTTCCCAAGCTCACCGTGTGAATCTTTAACTCTCTTCCTTGTCATTTAGCATAGTTCTCTACCTGTTGCAGGAAAGTTCCGAGGTTCAGAATGCCAACGCGTTACGGCCCCTACTATTGAATGCTAATTTTGTTTAAGACATTGTTGAATTAGAGATATCACACTTAAATGTCTGCATGCCCTTTTCCTTATTTATTATGATGGAAGTTGATGTTTGGATAAAATCGAAATGGAGTGTGAGCGAGCACGATGCAGGTTCAATCGCTATAACAGAGCTCTACCATGCGCAGCCATTACTATGTAAAGAAAAAGGCTTCTCTGGACTTGCTGCAGGTAAGCTTTTAAGATTTAAGTATTCACCTTGGAATTGTGCATCGAGTTTGAAAATAACGATGCAACGCAATGCATACTAAACAGTTTATATATTTGGTGCTTGCTGCTATTTTTATTTAATTCTGTGTCGAGATTTATCGACTTTTGTTTGCCCCATCTGCTCCGTCAGTTGTGAAGTTCGTTCTTGTTTGAAGAACAATAATCGAGGGATCGAACCGGTGAGTAATCCCCCTAAGTGTCATTTTTCGATTGGTTGCTTTCTCTGAATTAGTTTACTTGAACATAGTTCCAGATTTTAGTATTAGCATTCTTGTTTCTTCATAGATTGTAAGTTCTTATTTGTTTTCTTTATGATTCTATTTCATTTCCTTCCCGC

mRNA sequence

GCAACTCACTTAGCGTGGAAGAGGAGAGGGAGATAAACTCAGAAAGACGAAGGGGCGGAGGGACGGAGGAGAATCCATGGAGCACGAAGACTTCGACATGATTGGCTCGGACCTCAACGATACGGCGGAGTTGGACGACATGACGAAACGGTTGAAAGAGATGGAAAGTGAAGCTGCTGCCCTACGTGAGATGCAGGCCAAGGTCGAGAAGGAGATGAGTTCTCTACAAGATCCAGCAAGTTCTGCTGCAAGTCAAGCAAACAGGGAGGAAGTGGATGCACGGTCAGTGTTTGTTGGCAATGTTGACTACTCATGTACCCCAGAAGAAGTACAGCAACATTTCCAGACATGTGGAACTGTAAACAGAATTACTATTCGCACAGATAAGTTTGGGCAGCCGAAGGGTTACGCGTATGTTGAATTCCTTGAGCCCGAAGCTGTTCAAGAGGCTCTTCTTCTGAATGAATCAGAACTACATGGTCGACAGCTGAAGGTAACTGCCAAGAGGACAAACATACCTGGGATGAAGCAGTATCGTCCACGCCGACCCAACTCATTTATGGGTGCTCAATCCAGGAGCCCATATGTTGCTGCTCCTTATTTCTTCGCACCATATGGATATGGGAAAGTTCCGAGGTTCAGAATGCCAACGCGTTACGGCCCCTACTATTGAATGCTAATTTTGTTTAAGACATTGTTGAATTAGAGATATCACACTTAAATGTCTGCATGCCCTTTTCCTTATTTATTATGATGGAAGTTGATGTTTGGATAAAATCGAAATGGAGTGTGAGCGAGCACGATGCAGGTTCAATCGCTATAACAGAGCTCTACCATGCGCAGCCATTACTATGTAAAGAAAAAGGCTTCTCTGGACTTGCTGCAGGTAAGCTTTTAAGATTTAAGTATTCACCTTGGAATTGTGCATCGAGTTTGAAAATAACGATGCAACGCAATGCATACTAAACAGTTTATATATTTGGTGCTTGCTGCTATTTTTATTTAATTCTGTGTCGAGATTTATCGACTTTTGTTTGCCCCATCTGCTCCGTCAGTTGTGAAGTTCGTTCTTGTTTGAAGAACAATAATCGAGGGATCGAACCGGTGAGTAATCCCCCTAAGTGTCATTTTTCGATTGGTTGCTTTCTCTGAATTAGTTTACTTGAACATAGTTCCAGATTTTAGTATTAGCATTCTTGTTTCTTCATAGATTGTAAGTTCTTATTTGTTTTCTTTATGATTCTATTTCATTTCCTTCCCGC

Coding sequence (CDS)

ATGGAGCACGAAGACTTCGACATGATTGGCTCGGACCTCAACGATACGGCGGAGTTGGACGACATGACGAAACGGTTGAAAGAGATGGAAAGTGAAGCTGCTGCCCTACGTGAGATGCAGGCCAAGGTCGAGAAGGAGATGAGTTCTCTACAAGATCCAGCAAGTTCTGCTGCAAGTCAAGCAAACAGGGAGGAAGTGGATGCACGGTCAGTGTTTGTTGGCAATGTTGACTACTCATGTACCCCAGAAGAAGTACAGCAACATTTCCAGACATGTGGAACTGTAAACAGAATTACTATTCGCACAGATAAGTTTGGGCAGCCGAAGGGTTACGCGTATGTTGAATTCCTTGAGCCCGAAGCTGTTCAAGAGGCTCTTCTTCTGAATGAATCAGAACTACATGGTCGACAGCTGAAGGTAACTGCCAAGAGGACAAACATACCTGGGATGAAGCAGTATCGTCCACGCCGACCCAACTCATTTATGGGTGCTCAATCCAGGAGCCCATATGTTGCTGCTCCTTATTTCTTCGCACCATATGGATATGGGAAAGTTCCGAGGTTCAGAATGCCAACGCGTTACGGCCCCTACTATTGA
Homology
[Close]
BLAST of CmoCh04G004330 vs. Swiss-Prot
Match: PABN2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PABN2 PE=1 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 1.1e-72
Identity = 142/193 (73.58%), Postives = 163/193 (84.46%), Query Frame = 1 

Query: 5   DFDMIGSDLNDTAELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQDPASSAASQANRE 64
           D DM  +D +   ELD+M KRLKEME EAAALREMQAKVEKEM + QDPAS AA+QA +E
Sbjct: 29  DLDMAAADDDAVKELDEMKKRLKEMEDEAAALREMQAKVEKEMGA-QDPASIAANQAGKE 88

Query: 65  EVDARSVFVGNVDYSCTPEEVQQHFQTCGTVNRITIRTDKFGQPKGYAYVEFLEPEAVQE 124
           EVDARSVFVGNVDY+CTPEEVQQHFQTCGTV+R+TI TDKFGQPKG+AYVEF+E EAVQE
Sbjct: 89  EVDARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQE 148

Query: 125 ALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFFAPYGYGK 184
           AL LNESELHGRQLKV  KRTN+PG+KQ+R RR N +MG + R P++ +PY ++PYGYGK
Sbjct: 149 ALQLNESELHGRQLKVLQKRTNVPGLKQFRGRRFNPYMGYRFRRPFM-SPYMYSPYGYGK 208

Query: 185 VPRFRMPTRYGPY 198
            PRFR P RY PY
Sbjct: 209 APRFRRPMRYMPY 219

[Close]
BLAST of CmoCh04G004330 vs. Swiss-Prot
Match: PABN3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PABN3 PE=1 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 4.1e-72
Identity = 140/193 (72.54%), Postives = 158/193 (81.87%), Query Frame = 1 

Query: 5   DFDMIGSDLNDTAELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQDPASSAASQANRE 64
           D DM  +D +   EL +M +RLKEME EAAALREMQAKVEKEM + QDPAS AA+Q  +E
Sbjct: 25  DIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQAKVEKEMGATQDPASMAANQEGKE 84

Query: 65  EVDARSVFVGNVDYSCTPEEVQQHFQTCGTVNRITIRTDKFGQPKGYAYVEFLEPEAVQE 124
           EVDARSV+VGNVDY+CTPEEVQ HFQTCGTVNR+TI  DKFGQPKG+AYVEF+E EAVQE
Sbjct: 85  EVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQE 144

Query: 125 ALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFFAPYGYGK 184
           AL LNESELHGRQLKV+ KRTN+PGMKQY P R N  MG + R P+V  PYF++PYGYGK
Sbjct: 145 ALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFV-PPYFYSPYGYGK 204

Query: 185 VPRFRMPTRYGPY 198
            PRFR P RY PY
Sbjct: 205 APRFRRPMRYMPY 216

[Close]
BLAST of CmoCh04G004330 vs. Swiss-Prot
Match: PABN1_ARATH (Polyadenylate-binding protein 1 OS=Arabidopsis thaliana GN=PABN1 PE=1 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 3.6e-60
Identity = 121/185 (65.41%), Postives = 148/185 (80.00%), Query Frame = 1 

Query: 14  NDTAELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQDPASSAASQANREEVDARSVFV 73
           + + +L+DM KR+KE+E EA ALREMQAK EK+M + QDP S   S A +EEVD+RS++V
Sbjct: 49  SSSRDLEDMKKRIKEIEEEAGALREMQAKAEKDMGASQDP-SGGVSAAEKEEVDSRSIYV 108

Query: 74  GNVDYSCTPEEVQQHFQTCGTVNRITIRTDKFGQPKGYAYVEFLEPEAVQEALLLNESEL 133
           GNVDY+CTPEEVQQHFQ+CGTVNR+TI TDKFGQPKG+AYVEF+E EAVQ +L+LNESEL
Sbjct: 109 GNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESEL 168

Query: 134 HGRQLKVTAKRTNIPGMKQYRPR-RPNSFMGAQSRSPYVAAPYFFAPYGYGKVPRFRMPT 193
           HGRQ+KV+AKRTN+PGM+Q+R R RP  F   +   P V    F+ PY YG+VPRFR P 
Sbjct: 169 HGRQIKVSAKRTNVPGMRQFRGRGRP--FRPMRGFMPGVP---FYPPYAYGRVPRFRRPM 227

Query: 194 RYGPY 198
           RY PY
Sbjct: 229 RYRPY 227

[Close]
BLAST of CmoCh04G004330 vs. Swiss-Prot
Match: PAB2_SCHPO (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pab2 PE=1 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.6e-34
Identity = 88/176 (50.00%), Postives = 113/176 (64.20%), Query Frame = 1 

Query: 8   MIGSDLNDTAELD--DMTKRLKEMESEAAALREMQAKVEKEMSSLQDPASSAASQANREE 67
           M   D  DT E +  +M +R+ EME+EAA LR MQ +++ E  +L++         ++E 
Sbjct: 1   MSDQDALDTQEKELLEMKERVAEMEAEAAKLRAMQEQLDNETEALRN---------DKES 60

Query: 68  VDARSVFVGNVDYSCTPEEVQQHFQTCGTVNRITIRTDKF-GQPKGYAYVEFLEPEAVQE 127
           +DA+SV+VGNVDYS TPEE+Q HF +CG+VNR+TI  DKF G PKG+AY+EF EP  V  
Sbjct: 61  IDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPN 120

Query: 128 ALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFFAPY 181
           ALLLN S LH R LKVT KRTN+PGM + R R      G + R  Y      FAPY
Sbjct: 121 ALLLNGSMLHERPLKVTPKRTNVPGMSRGRGRGRGRGRG-RGRGGYRGRARGFAPY 166

[Close]
BLAST of CmoCh04G004330 vs. Swiss-Prot
Match: PAB2A_XENLA (Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-a PE=2 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 5.1e-30
Identity = 81/193 (41.97%), Postives = 118/193 (61.14%), Query Frame = 1 

Query: 2   EHEDFDMIGSDLNDTAELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQDPASSAA--- 61
           E E  ++ G    +  EL+ +  R++EME EA  L+E+Q +VEK+M+    P ++     
Sbjct: 93  EEEPGELTGDQTIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIM 152

Query: 62  SQANREEVDARSVFVGNVDYSCTPEEVQQHFQTCGTVNRITIRTDKF-GQPKGYAYVEFL 121
           S   + E DARS++VGNVDY  T EE++ HF  CG+VNR+TI  DKF G PKG+AY+EF 
Sbjct: 153 SVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFC 212

Query: 122 EPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFF 181
           + E+V+ +L L+ES   GRQ+KV  KRTN PG+       P +   A++ S Y +   F+
Sbjct: 213 DKESVRTSLALDESLFRGRQIKVVPKRTNRPGISTTDRGFPRARYRARA-SSYSSRSRFY 272

Query: 182 APYGYGKVPRFRM 191
           +  GY   PR R+
Sbjct: 273 S--GYTPRPRGRV 282

[Close]
BLAST of CmoCh04G004330 vs. TrEMBL
Match: A0A0A0KXZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G110060 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 1.4e-95
Identity = 180/198 (90.91%), Postives = 189/198 (95.45%), Query Frame = 1 

Query: 1   MEHEDFDMIGSDLNDTAELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQDPASSAASQ 60
           MEH+D DMIGSD ND  ELDDM KRLK+ME EAAALREMQAKVEKEMSS+QDPAS+AASQ
Sbjct: 1   MEHDDVDMIGSDANDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60

Query: 61  ANREEVDARSVFVGNVDYSCTPEEVQQHFQTCGTVNRITIRTDKFGQPKGYAYVEFLEPE 120
           ANREEVD+RSVFVGNVDYSCTPEEVQQHFQ+CGTVNRITIRTDKFGQPKGYAYVEF+EPE
Sbjct: 61  ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPE 120

Query: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFFAPY 180
           AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRR N FMGA+SRSPYV APYFF+PY
Sbjct: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYV-APYFFSPY 180

Query: 181 GYGKVPRFRMPTRYGPYY 199
           GYGKVPRFRMPTRYGPYY
Sbjct: 181 GYGKVPRFRMPTRYGPYY 197

[Close]
BLAST of CmoCh04G004330 vs. TrEMBL
Match: W9QVE2_9ROSA (Polyadenylate-binding protein 2 OS=Morus notabilis GN=L484_017178 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 2.5e-84
Identity = 158/198 (79.80%), Postives = 179/198 (90.40%), Query Frame = 1 

Query: 1   MEHEDFDMIGSDLNDTAELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQDPASSAASQ 60
           MEH+D DM G+D  + AELDDM KRLKEME EAAALREMQAKVEKEM S+Q+P+++A +Q
Sbjct: 1   MEHDDVDMTGADGTE-AELDDMKKRLKEMEDEAAALREMQAKVEKEMGSVQEPSTAAGTQ 60

Query: 61  ANREEVDARSVFVGNVDYSCTPEEVQQHFQTCGTVNRITIRTDKFGQPKGYAYVEFLEPE 120
           ANREEVD+RSVFVGNVDYSCTPEEVQQHFQ+CGTVNR+TIRTDKFGQPKGYAYVEF+E E
Sbjct: 61  ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFVEVE 120

Query: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFFAPY 180
           AVQEA+LLNESELHGRQLKV+AKRTNIPGMKQYRPRRPN +MG + RSPYV  P+ ++PY
Sbjct: 121 AVQEAILLNESELHGRQLKVSAKRTNIPGMKQYRPRRPNPYMGFRGRSPYVPPPFMYSPY 180

Query: 181 GYGKVPRFRMPTRYGPYY 199
           GYGKVPR RMP RY PY+
Sbjct: 181 GYGKVPRMRMPMRYSPYF 197

[Close]
BLAST of CmoCh04G004330 vs. TrEMBL
Match: A0A068VIU6_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00006212001 PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 4.4e-81
Identity = 154/194 (79.38%), Postives = 174/194 (89.69%), Query Frame = 1 

Query: 5   DFDMIGSDLNDTAELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQDPASSAASQANRE 64
           D +M  ++     ELDDM KRLKEME EAAALREMQAKVEKEM ++QDPA++AASQANRE
Sbjct: 4   DVEMAAAEDGAFVELDDMKKRLKEMEDEAAALREMQAKVEKEMGAVQDPAAAAASQANRE 63

Query: 65  EVDARSVFVGNVDYSCTPEEVQQHFQTCGTVNRITIRTDKFGQPKGYAYVEFLEPEAVQE 124
           EVD+RSVFVGNVDYSCTPEEVQQHFQ CGTVNR+TIRT+KFGQPKGYAYVEFLEPEAVQE
Sbjct: 64  EVDSRSVFVGNVDYSCTPEEVQQHFQACGTVNRVTIRTNKFGQPKGYAYVEFLEPEAVQE 123

Query: 125 ALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFFAPYGYGK 184
           ALLLNESELHGRQLKV+AKRTN+PGMKQ+RPRRP+ +MG + R+PYV APY + PYG+GK
Sbjct: 124 ALLLNESELHGRQLKVSAKRTNVPGMKQFRPRRPSPYMGFRGRTPYV-APYVYPPYGFGK 183

Query: 185 VPRFRMPTRYGPYY 199
           VPRFRMP RY PY+
Sbjct: 184 VPRFRMPMRYSPYF 196

[Close]
BLAST of CmoCh04G004330 vs. TrEMBL
Match: A0A059ATB3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I02641 PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 5.8e-81
Identity = 155/198 (78.28%), Postives = 175/198 (88.38%), Query Frame = 1 

Query: 1   MEHEDFDMIGSDLNDTAELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQDPASSAASQ 60
           M+  D +M  +D  + AELDDM KRLKEME EAAALREMQAKVE+EM S+QDPA++AASQ
Sbjct: 35  MKEGDVEMSPADSGE-AELDDMKKRLKEMEDEAAALREMQAKVEREMGSVQDPANAAASQ 94

Query: 61  ANREEVDARSVFVGNVDYSCTPEEVQQHFQTCGTVNRITIRTDKFGQPKGYAYVEFLEPE 120
           AN+EE+D+RS+FVGNVDYSCTPEEVQQHFQ+CGTVNR+TIRTDK+GQPKGYAYVEFLEPE
Sbjct: 95  ANKEEIDSRSIFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKYGQPKGYAYVEFLEPE 154

Query: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFFAPY 180
           AVQEALLLNESELHGRQLKVTAKRTN+PGMKQYRPRRPN FMG + R PY+  P F+ PY
Sbjct: 155 AVQEALLLNESELHGRQLKVTAKRTNVPGMKQYRPRRPNPFMGGRFRGPYM--PPFYPPY 214

Query: 181 GYGKVPRFRMPTRYGPYY 199
           GYGK+PRFR   RY PYY
Sbjct: 215 GYGKIPRFRTSMRYSPYY 229

[Close]
BLAST of CmoCh04G004330 vs. TrEMBL
Match: B9SIM4_RICCO (Poly-A binding protein, putative OS=Ricinus communis GN=RCOM_0823750 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 9.8e-81
Identity = 160/199 (80.40%), Postives = 175/199 (87.94%), Query Frame = 1 

Query: 1   MEHEDFDMIGSDLND--TAELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQDPASSAA 60
           ME ED  M G+++N+    ELDDM KRLKEME EAAALREMQAKVEKEM S QDP ++AA
Sbjct: 1   MEGEDMVMDGTEINEEEVPELDDMKKRLKEMEDEAAALREMQAKVEKEMGSSQDP-TAAA 60

Query: 61  SQANREEVDARSVFVGNVDYSCTPEEVQQHFQTCGTVNRITIRTDKFGQPKGYAYVEFLE 120
           SQANREEVD+RSVFVGNVDYSCTPEEVQQHFQ+CGTVNRITIRTDK+GQPKGYAYVEFLE
Sbjct: 61  SQANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKYGQPKGYAYVEFLE 120

Query: 121 PEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFFA 180
           PEAVQEALLLNESELHGRQLKVTAKRTN+PGMKQ+RPRRPN +MG   R   +  PYF++
Sbjct: 121 PEAVQEALLLNESELHGRQLKVTAKRTNVPGMKQFRPRRPNPYMGFAPRGSQL-PPYFYS 180

Query: 181 PYGYGKVPRFRMPTRYGPY 198
           PYGYGKVPRFRMP RY PY
Sbjct: 181 PYGYGKVPRFRMPMRYSPY 197

[Close]
BLAST of CmoCh04G004330 vs. TAIR10
Match: AT5G65260.1 (AT5G65260.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 274.2 bits (700), Expect = 6.1e-74
Identity = 142/193 (73.58%), Postives = 163/193 (84.46%), Query Frame = 1 

Query: 5   DFDMIGSDLNDTAELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQDPASSAASQANRE 64
           D DM  +D +   ELD+M KRLKEME EAAALREMQAKVEKEM + QDPAS AA+QA +E
Sbjct: 29  DLDMAAADDDAVKELDEMKKRLKEMEDEAAALREMQAKVEKEMGA-QDPASIAANQAGKE 88

Query: 65  EVDARSVFVGNVDYSCTPEEVQQHFQTCGTVNRITIRTDKFGQPKGYAYVEFLEPEAVQE 124
           EVDARSVFVGNVDY+CTPEEVQQHFQTCGTV+R+TI TDKFGQPKG+AYVEF+E EAVQE
Sbjct: 89  EVDARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQE 148

Query: 125 ALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFFAPYGYGK 184
           AL LNESELHGRQLKV  KRTN+PG+KQ+R RR N +MG + R P++ +PY ++PYGYGK
Sbjct: 149 ALQLNESELHGRQLKVLQKRTNVPGLKQFRGRRFNPYMGYRFRRPFM-SPYMYSPYGYGK 208

Query: 185 VPRFRMPTRYGPY 198
            PRFR P RY PY
Sbjct: 209 APRFRRPMRYMPY 219

[Close]
BLAST of CmoCh04G004330 vs. TAIR10
Match: AT5G10350.1 (AT5G10350.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 272.3 bits (695), Expect = 2.3e-73
Identity = 140/193 (72.54%), Postives = 158/193 (81.87%), Query Frame = 1 

Query: 5   DFDMIGSDLNDTAELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQDPASSAASQANRE 64
           D DM  +D +   EL +M +RLKEME EAAALREMQAKVEKEM + QDPAS AA+Q  +E
Sbjct: 25  DIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQAKVEKEMGATQDPASMAANQEGKE 84

Query: 65  EVDARSVFVGNVDYSCTPEEVQQHFQTCGTVNRITIRTDKFGQPKGYAYVEFLEPEAVQE 124
           EVDARSV+VGNVDY+CTPEEVQ HFQTCGTVNR+TI  DKFGQPKG+AYVEF+E EAVQE
Sbjct: 85  EVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQE 144

Query: 125 ALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFFAPYGYGK 184
           AL LNESELHGRQLKV+ KRTN+PGMKQY P R N  MG + R P+V  PYF++PYGYGK
Sbjct: 145 ALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFV-PPYFYSPYGYGK 204

Query: 185 VPRFRMPTRYGPY 198
            PRFR P RY PY
Sbjct: 205 APRFRRPMRYMPY 216

[Close]
BLAST of CmoCh04G004330 vs. TAIR10
Match: AT5G51120.2 (AT5G51120.2 polyadenylate-binding protein 1)

HSP 1 Score: 213.4 bits (542), Expect = 1.3e-55
Identity = 119/222 (53.60%), Postives = 148/222 (66.67%), Query Frame = 1 

Query: 14  NDTAELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQ---------------------- 73
           + + +L+DM KR+KE+E EA ALREMQAK EK+M + Q                      
Sbjct: 49  SSSRDLEDMKKRIKEIEEEAGALREMQAKAEKDMGASQGLKLVLLIMILLWVYILESFSE 108

Query: 74  ---------------DPASSAASQANREEVDARSVFVGNVDYSCTPEEVQQHFQTCGTVN 133
                          +  +S  S A +EEVD+RS++VGNVDY+CTPEEVQQHFQ+CGTVN
Sbjct: 109 SMNLSRNLLEFEYEKEIINSGVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVN 168

Query: 134 RITIRTDKFGQPKGYAYVEFLEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPR 193
           R+TI TDKFGQPKG+AYVEF+E EAVQ +L+LNESELHGRQ+KV+AKRTN+PGM+Q+R R
Sbjct: 169 RVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNVPGMRQFRGR 228

Query: 194 -RPNSFMGAQSRSPYVAAPYFFAPYGYGKVPRFRMPTRYGPY 198
            RP  F   +   P V    F+ PY YG+VPRFR P RY PY
Sbjct: 229 GRP--FRPMRGFMPGVP---FYPPYAYGRVPRFRRPMRYRPY 265

[Close]
BLAST of CmoCh04G004330 vs. TAIR10
Match: AT3G12640.1 (AT3G12640.1 RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-08
Identity = 33/101 (32.67%), Postives = 55/101 (54.46%), Query Frame = 1 

Query: 41  AKVEKEMSSLQDPASSAASQANREEVDARSVFVGNVDYSCTPEEVQQHFQTCGTVNRITI 100
           A V++E ++ +    + ++    E+  +R++FV NV +  T + + +HF   G V +  I
Sbjct: 452 ASVKEESTTNKSVPGTLSTTRPLEDASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFI 511

Query: 101 RTD-KFGQPKGYAYVEFLEPEAVQEALLLNESELHGRQLKV 141
            TD   GQP G AY+EF   EA + AL L+ +    R LK+
Sbjct: 512 VTDPATGQPSGSAYIEFTRKEAAENALSLDGTSFMSRILKI 552

[Close]
BLAST of CmoCh04G004330 vs. TAIR10
Match: AT2G36660.1 (AT2G36660.1 poly(A) binding protein 7)

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-07
Identity = 32/114 (28.07%), Postives = 56/114 (49.12%), Query Frame = 1 

Query: 70  SVFVGNVDYSCTPEEVQQHFQTCGTVNRITIRTDKFGQPKGYAYVEFLEPEAVQEALLLN 129
           +++V NV+ + T EE+++HF  CGT+    +  D+ G+ KG+ +V F  PE   +A+   
Sbjct: 305 NIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTF 364

Query: 130 ESEL-HGRQLKVTAKRTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFFAPYGY 183
             ++ HG+ L V   +       Q + +  N     +S S     P  +AP  Y
Sbjct: 365 HGQMFHGKPLYVAIAQKKEDRKMQLQVQFGNRVEARKSSSSASVNPGTYAPLYY 418

[Close]
BLAST of CmoCh04G004330 vs. NCBI nr
Match: gi|659125824|ref|XP_008462875.1| (PREDICTED: polyadenylate-binding protein 2-like isoform X2 [Cucumis melo])

HSP 1 Score: 357.5 bits (916), Expect = 1.6e-95
Identity = 180/198 (90.91%), Postives = 189/198 (95.45%), Query Frame = 1 

Query: 1   MEHEDFDMIGSDLNDTAELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQDPASSAASQ 60
           MEH+D DMIGSD ND  ELDDM KRLK+ME EAAALREMQAKVEKEMSS+QDPAS+AASQ
Sbjct: 1   MEHDDIDMIGSDTNDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60

Query: 61  ANREEVDARSVFVGNVDYSCTPEEVQQHFQTCGTVNRITIRTDKFGQPKGYAYVEFLEPE 120
           ANREEVD+RSVFVGNVDYSCTPEEVQQHFQ+CGTVNRITIRTDKFGQPKGYAYVEF+EPE
Sbjct: 61  ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPE 120

Query: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFFAPY 180
           AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRR N FMGA+SRSPYV APYFF+PY
Sbjct: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYV-APYFFSPY 180

Query: 181 GYGKVPRFRMPTRYGPYY 199
           GYGKVPRFRMPTRYGPYY
Sbjct: 181 GYGKVPRFRMPTRYGPYY 197

[Close]
BLAST of CmoCh04G004330 vs. NCBI nr
Match: gi|778691980|ref|XP_011653388.1| (PREDICTED: polyadenylate-binding protein 2-like isoform X3 [Cucumis sativus])

HSP 1 Score: 357.1 bits (915), Expect = 2.0e-95
Identity = 180/198 (90.91%), Postives = 189/198 (95.45%), Query Frame = 1 

Query: 1   MEHEDFDMIGSDLNDTAELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQDPASSAASQ 60
           MEH+D DMIGSD ND  ELDDM KRLK+ME EAAALREMQAKVEKEMSS+QDPAS+AASQ
Sbjct: 1   MEHDDVDMIGSDANDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60

Query: 61  ANREEVDARSVFVGNVDYSCTPEEVQQHFQTCGTVNRITIRTDKFGQPKGYAYVEFLEPE 120
           ANREEVD+RSVFVGNVDYSCTPEEVQQHFQ+CGTVNRITIRTDKFGQPKGYAYVEF+EPE
Sbjct: 61  ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPE 120

Query: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFFAPY 180
           AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRR N FMGA+SRSPYV APYFF+PY
Sbjct: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYV-APYFFSPY 180

Query: 181 GYGKVPRFRMPTRYGPYY 199
           GYGKVPRFRMPTRYGPYY
Sbjct: 181 GYGKVPRFRMPTRYGPYY 197

[Close]
BLAST of CmoCh04G004330 vs. NCBI nr
Match: gi|449438769|ref|XP_004137160.1| (PREDICTED: polyadenylate-binding protein 2-like isoform X4 [Cucumis sativus])

HSP 1 Score: 354.0 bits (907), Expect = 1.7e-94
Identity = 181/198 (91.41%), Postives = 190/198 (95.96%), Query Frame = 1 

Query: 1   MEHEDFDMIGSDLNDTAELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQDPASSAASQ 60
           MEH+D DMIGSD ND AELDDM KRLK+ME EAAALREMQAKVEKEMSS+QDPAS+AASQ
Sbjct: 1   MEHDDVDMIGSDAND-AELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60

Query: 61  ANREEVDARSVFVGNVDYSCTPEEVQQHFQTCGTVNRITIRTDKFGQPKGYAYVEFLEPE 120
           ANREEVD+RSVFVGNVDYSCTPEEVQQHFQ+CGTVNRITIRTDKFGQPKGYAYVEF+EPE
Sbjct: 61  ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPE 120

Query: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFFAPY 180
           AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRR N FMGA+SRSPYV APYFF+PY
Sbjct: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYV-APYFFSPY 180

Query: 181 GYGKVPRFRMPTRYGPYY 199
           GYGKVPRFRMPTRYGPYY
Sbjct: 181 GYGKVPRFRMPTRYGPYY 196

[Close]
BLAST of CmoCh04G004330 vs. NCBI nr
Match: gi|659125822|ref|XP_008462873.1| (PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Cucumis melo])

HSP 1 Score: 351.3 bits (900), Expect = 1.1e-93
Identity = 180/203 (88.67%), Postives = 189/203 (93.10%), Query Frame = 1 

Query: 1   MEHEDFDMIGSDLNDTAELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQDPASSAASQ 60
           MEH+D DMIGSD ND  ELDDM KRLK+ME EAAALREMQAKVEKEMSS+QDPAS+AASQ
Sbjct: 1   MEHDDIDMIGSDTNDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60

Query: 61  ANREEVDARSVFVGNVDYSCTPEEVQQHFQTCGTVNRITIRTDKFGQPKGYAYVEFLEPE 120
           ANREEVD+RSVFVGNVDYSCTPEEVQQHFQ+CGTVNRITIRTDKFGQPKGYAYVEF+EPE
Sbjct: 61  ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPE 120

Query: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFFAPY 180
           AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRR N FMGA+SRSPYV APYFF+PY
Sbjct: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYV-APYFFSPY 180

Query: 181 GYG-----KVPRFRMPTRYGPYY 199
           GYG     KVPRFRMPTRYGPYY
Sbjct: 181 GYGSICCRKVPRFRMPTRYGPYY 202

[Close]
BLAST of CmoCh04G004330 vs. NCBI nr
Match: gi|778691974|ref|XP_011653386.1| (PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Cucumis sativus])

HSP 1 Score: 350.9 bits (899), Expect = 1.5e-93
Identity = 180/203 (88.67%), Postives = 189/203 (93.10%), Query Frame = 1 

Query: 1   MEHEDFDMIGSDLNDTAELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQDPASSAASQ 60
           MEH+D DMIGSD ND  ELDDM KRLK+ME EAAALREMQAKVEKEMSS+QDPAS+AASQ
Sbjct: 1   MEHDDVDMIGSDANDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60

Query: 61  ANREEVDARSVFVGNVDYSCTPEEVQQHFQTCGTVNRITIRTDKFGQPKGYAYVEFLEPE 120
           ANREEVD+RSVFVGNVDYSCTPEEVQQHFQ+CGTVNRITIRTDKFGQPKGYAYVEF+EPE
Sbjct: 61  ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPE 120

Query: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFFAPY 180
           AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRR N FMGA+SRSPYV APYFF+PY
Sbjct: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYV-APYFFSPY 180

Query: 181 GYG-----KVPRFRMPTRYGPYY 199
           GYG     KVPRFRMPTRYGPYY
Sbjct: 181 GYGSICCRKVPRFRMPTRYGPYY 202

The following BLAST results are available for this feature:
BLAST of CmoCh04G004330 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PABN2_ARATH1.1e-7273.58Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PABN2 PE=1 SV=1[more]
PABN3_ARATH4.1e-7272.54Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PABN3 PE=1 SV=1[more]
PABN1_ARATH3.6e-6065.41Polyadenylate-binding protein 1 OS=Arabidopsis thaliana GN=PABN1 PE=1 SV=1[more]
PAB2_SCHPO2.6e-3450.00Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC ... [more]
PAB2A_XENLA5.1e-3041.97Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-a PE=2 SV=1[more]
BLAST of CmoCh04G004330 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXZ1_CUCSA1.4e-9590.91Uncharacterized protein OS=Cucumis sativus GN=Csa_4G110060 PE=4 SV=1[more]
W9QVE2_9ROSA2.5e-8479.80Polyadenylate-binding protein 2 OS=Morus notabilis GN=L484_017178 PE=4 SV=1[more]
A0A068VIU6_COFCA4.4e-8179.38Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00006212001 PE=4 SV=1[more]
A0A059ATB3_EUCGR5.8e-8178.28Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I02641 PE=4 SV=1[more]
B9SIM4_RICCO9.8e-8180.40Poly-A binding protein, putative OS=Ricinus communis GN=RCOM_0823750 PE=4 SV=1[more]
BLAST of CmoCh04G004330 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G65260.16.1e-7473.58 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G10350.12.3e-7372.54 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G51120.21.3e-5553.60 polyadenylate-binding protein 1[more]
AT3G12640.11.2e-0832.67 RNA binding (RRM/RBD/RNP motifs) family protein[more]
AT2G36660.11.3e-0728.07 poly(A) binding protein 7[more]
BLAST of CmoCh04G004330 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659125824|ref|XP_008462875.1|1.6e-9590.91PREDICTED: polyadenylate-binding protein 2-like isoform X2 [Cucumis melo][more]
gi|778691980|ref|XP_011653388.1|2.0e-9590.91PREDICTED: polyadenylate-binding protein 2-like isoform X3 [Cucumis sativus][more]
gi|449438769|ref|XP_004137160.1|1.7e-9491.41PREDICTED: polyadenylate-binding protein 2-like isoform X4 [Cucumis sativus][more]
gi|659125822|ref|XP_008462873.1|1.1e-9388.67PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Cucumis melo][more]
gi|778691974|ref|XP_011653386.1|1.5e-9388.67PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016607 nuclear speck
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0008143 poly(A) binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G004330.1CmoCh04G004330.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 71..139
score: 2.5
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 70..141
score: 1.2
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 69..145
score: 16
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 52..141
score: 2.1
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 60..166
score: 1.03
NoneNo IPR availableunknownCoilCoilcoord: 19..46
scor
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 31..48
score: 2.3E-29coord: 66..140
score: 2.3
NoneNo IPR availablePANTHERPTHR24012:SF436PABPN1 PROTEINcoord: 31..48
score: 2.3E-29coord: 66..140
score: 2.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G004330Cucsa.398220Cucumber (Gy14) v1cgycmoB1102
CmoCh04G004330Cucsa.093720Cucumber (Gy14) v1cgycmoB0197
CmoCh04G004330CmaCh04G004050Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G004330Cla002486Watermelon (97103) v1cmowmB658
CmoCh04G004330Csa4G110060Cucumber (Chinese Long) v2cmocuB710
CmoCh04G004330Csa4G026860Cucumber (Chinese Long) v2cmocuB700
CmoCh04G004330MELO3C024821Melon (DHL92) v3.5.1cmomeB689
CmoCh04G004330MELO3C017602Melon (DHL92) v3.5.1cmomeB694
CmoCh04G004330ClCG10G009330Watermelon (Charleston Gray)cmowcgB619
CmoCh04G004330CSPI04G09340Wild cucumber (PI 183967)cmocpiB720
CmoCh04G004330CSPI04G04520Wild cucumber (PI 183967)cmocpiB708
CmoCh04G004330Lsi03G009550Bottle gourd (USVL1VR-Ls)cmolsiB659
CmoCh04G004330Cp4.1LG14g05150Cucurbita pepo (Zucchini)cmocpeB671
CmoCh04G004330Cp4.1LG01g03140Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G004330MELO3C024821.2Melon (DHL92) v3.6.1cmomedB782
CmoCh04G004330MELO3C017602.2Melon (DHL92) v3.6.1cmomedB788
CmoCh04G004330CsaV3_4G009500Cucumber (Chinese Long) v3cmocucB0830
CmoCh04G004330Cla97C07G144430Watermelon (97103) v2cmowmbB749
CmoCh04G004330Cla97C10G192490Watermelon (97103) v2cmowmbB694
CmoCh04G004330CsGy4G009110Cucumber (Gy14) v2cgybcmoB528
CmoCh04G004330CsGy4G004430Cucumber (Gy14) v2cgybcmoB516
CmoCh04G004330Carg16787Silver-seed gourdcarcmoB1177
CmoCh04G004330Carg16773Silver-seed gourdcarcmoB1178
CmoCh04G004330Carg08080Silver-seed gourdcarcmoB0514
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G004330Wild cucumber (PI 183967)cmocpiB777
CmoCh04G004330Cucumber (Chinese Long) v2cmocuB770
CmoCh04G004330Melon (DHL92) v3.5.1cmomeB665
CmoCh04G004330Watermelon (Charleston Gray)cmowcgB607
CmoCh04G004330Watermelon (Charleston Gray)cmowcgB610
CmoCh04G004330Watermelon (97103) v1cmowmB648
CmoCh04G004330Cucurbita pepo (Zucchini)cmocpeB668
CmoCh04G004330Cucurbita pepo (Zucchini)cmocpeB672
CmoCh04G004330Cucurbita pepo (Zucchini)cmocpeB703
CmoCh04G004330Bottle gourd (USVL1VR-Ls)cmolsiB646
CmoCh04G004330Cucumber (Gy14) v2cgybcmoB948
CmoCh04G004330Melon (DHL92) v3.6.1cmomedB751
CmoCh04G004330Silver-seed gourdcarcmoB0403
CmoCh04G004330Cucumber (Chinese Long) v3cmocucB0910
CmoCh04G004330Watermelon (97103) v2cmowmbB684
CmoCh04G004330Watermelon (97103) v2cmowmbB771
CmoCh04G004330Wax gourdcmowgoB0810
CmoCh04G004330Cucurbita moschata (Rifu)cmocmoB125
CmoCh04G004330Cucurbita moschata (Rifu)cmocmoB286
CmoCh04G004330Cucurbita moschata (Rifu)cmocmoB395
CmoCh04G004330Cucumber (Gy14) v1cgycmoB0632
CmoCh04G004330Cucurbita maxima (Rimu)cmacmoB156
CmoCh04G004330Cucurbita maxima (Rimu)cmacmoB338
CmoCh04G004330Cucurbita maxima (Rimu)cmacmoB530