CsGy4G007940 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G007940
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like
Location	Chr4 : 5946152 .. 5948242 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACTCAGCTCTTCTCTTTGTTTTCACGTTCCTTTCTCACTCCACCGCAGTCCCCCATCTCCGTCTCTTCTCACTCCTCTTCCTCCCTTCTCCGCCGCCTCCCTCCCCTCGCTGCTATACTCACCGCTGATTTCCCGTCACTCTGCTGCACCGAGCGTGAGGAACTTCTCTACCCGTTCCACTTCTTCGTCTATCAAAGATCCCAATCCTAACTGGTCTAATCGACCACTCATGGAGACCATATTGCTTGATGGCTGTGATTTTGAACACTGGCTCGTTGTCATGGAGAACAACTCACGAGGGATGAGATTATCGACAGCTATATAAAAACGCTTGCCATTGTTGTCTGAAGGTAAATTCTCATTTTCGTATATTGTATTGAATCTCTCTCTCTCTCTTTCCTCCCAACGTTGGGCTACCCTGAATCTGATGATTGCATTTATTCGTGTCTCTTCTGTGTCTTTTTTTCTTCGTTGTGTTGTTCTTGGCTATGTCTTTGTTTTGTATTGATGATATGAAGCTGTACCTTTTCCTCTTCAGAGCTGCCTAAGGTTCGTTGGGTCTTACCTGATTCATACTTGGACGTTAAGAATAAAGATTACGGAGGTTATTCCTGACCCCATTAAGTATGCAAATAATCATTTTATCTCTTTCGGTGTCTAATTTTACAGTCCTCACTCTTTAGTTTTGAAAAGAGGTCAGTCGTTCTGAAGAAGGCTTTATTTCAATTTAAAGCTACTAGAAGTTAAAATTTTCATAATATCATATGTCTTGTTCATTATACATTTTTCTCAGAAAAGAAGTTTGAAATACGTCATTCAAAGATAGTAAGTAGCTTTTCTCTTTACAAAAATGTAGACTATTGAGGGGATAGAATGTTAGCTACTTACTTGAAAAGTTGAAGCTCTTGTATTGTATGATGGTTGAGGATCCTGACTCATTCAGGTCACATTCCTAAGATGATAGAAAGTTTAAAAACTTATCTAAGATTGCAATGCACTCTTGAGCAGACTGTCAATGCACTCTTAATTTGAAAGCCAGTATCTTTTTGTTGTAGTGTCTCCCTTGTTTTGGTTCACTTAAGGCTACAACTATTTTACCTTATTTTGGTGTTGTACAGAACTGTTATCTGACTTTCCGTGTATTTTTTCCCTTTGGCAGGGGGGCCTTTTATAAACGGACAAGCTGCTCCATATGACTCGAAGTACCACGAAGAATGGATTAGAAACAATGCTAAAGCAAATAGTAGGCGTGATGTTAATGGTAGGCGCAATTTCGATAGGTCAAGAAACTTTGAGAAGAGGGAAAACATGCAGAATGGAGAATTTCCAAATAATGTTTCAGCGAGTCAACCTACTGGACCGAAATTGAGTCCACCAGCTCCAAGTAGTACACCCCTCCCAACAACTTTAGTCCTAGCATGCCTCCTCACAACCATGCTGGAATACCCCAAGGCAACTATCCGGGAGGATATCCGAACAATTTTAACAGACCACTGCCTCCGCCACCACCATACAACTTCAACAGCCCACCACCACCTCCTCACAACTTTAACAGACCACCACCGCAAAACAACTTTAACGGACCACCACCACCATCAAATCCTGGGGGAGCACCGCCAAAGCAACTATTGGGGTGCACCACAGCCAAACTTCAGCAGGCCGCCTGCACAGAACAACTGTGGAGGGATGCAACCTAACGCTGGTGGATGGTCTAATAATGTGCATAACAATCAACAAGAATGGTCGCCAACTGGTCAGGGAAGTCTCAAACTTACGTAATTCATTGATTTTTTTGAATTTAGTTGCTGCTTGGTTCAAACCTCAAATTCTACTAGTCGCTGGTCGCCGAGTGTTCGTTCTGGTGCTTACAAGCGGTCGAGTTTAGTTTTACTTTTTGGAGTAGGCATATGCTTTGGTACTCTAAATGCAAGTATAGTTTAAAATATTCGTGAGATGTAATTAATTCATAATGTCTCCTTTACTATTGATATTTTTAATGATGTGTCTAATTTTTTGTTTTTAAGAAAATGCACTTCACGTTTTACTGTTGATTTTTTTTTTTTAATTTCGAGATTATTATTAGAA

mRNA sequence

ATGGCGACTCAGCTCTTCTCTTTGTTTTCACGTTCCTTTCTCACTCCACCGCAGTCCCCCATCTCCGTCTCTTCTCACTCCTCTTCCTCCCTTCTCCGCCGCCTCCCTCCCCTCGCTGCTATACTCACCGCTGATTTCCCGTCACTCTGCTGCACCGAGCAGCTGCCTAAGGTTCGTTGGGTCTTACCTGATTCATACTTGGACGTTAAGAATAAAGATTACGGAGGGGGGCCTTTTATAAACGGACAAGCTGCTCCATATGACTCGAAGTACCACGAAGAATGGATTAGAAACAATGCTAAAGCAAATAGTAGGCGTGATGTTAATGGTAGGCGCAATTTCGATAGGTCAAGAAACTTTGAGAAGAGGGAAAACATGCAGAATGGAGAATTTCCAAATAATGTTTCAGCGAGTCAACCTACTGGACCGAAATTGAGTCCACCAGCTCCAAGTAGTACACCCCTCCCAACAACTTTAGTCCTAGCATGCCTCCTCACAACCATGCTGGAATACCCCAAGGCAACTATCCGGGAGGATATCCGAACAATTTTAACAGACCACTGCCTCCGCCACCACCATACAACTTCAACAGCCCACCACCACCTCCTCACAACTTTAACAGACCACCACCGCAAAACAACTTTAACGGACCACCACCACCATCAAATCCTGGGGGAGCACCGCCAAAGCAACTATTGGGGTGCACCACAGCCAAACTTCAGCAGGCCGCCTGCACAGAACAACTGTGGAGGGATGCAACCTAACGCTGGTGGATGGTCTAATAATGTGCATAACAATCAACAAGAATGGTCGCCAACTGGTCAGGGAAGTCTCAAACTTACGTAATTCATTGATTTTTTTGAATTTAGTTGCTGCTTGGTTCAAACCTCAAATTCTACTAGTCGCTGGTCGCCGAGTGTTCGTTCTGGTGCTTACAAGCGGTCGAGTTTAGTTTTACTTTTTGGAGTAGGCATATGCTTTGGTACTCTAAATGCAAGTATAGTTTAAAATATTCGTGAGATGTAATTAATTCATAATGTCTCCTTTACTATTGATATTTTTAATGATGTGTCTAATTTTTTGTTTTTAAGAAAATGCACTTCACGTTTTACTGTTGATTTTTTTTTTTTAATTTCGAGATTATTATTAGAA

Coding sequence (CDS)

ATGGCGACTCAGCTCTTCTCTTTGTTTTCACGTTCCTTTCTCACTCCACCGCAGTCCCCCATCTCCGTCTCTTCTCACTCCTCTTCCTCCCTTCTCCGCCGCCTCCCTCCCCTCGCTGCTATACTCACCGCTGATTTCCCGTCACTCTGCTGCACCGAGCAGCTGCCTAAGGTTCGTTGGGTCTTACCTGATTCATACTTGGACGTTAAGAATAAAGATTACGGAGGGGGGCCTTTTATAAACGGACAAGCTGCTCCATATGACTCGAAGTACCACGAAGAATGGATTAGAAACAATGCTAAAGCAAATAGTAGGCGTGATGTTAATGGTAGGCGCAATTTCGATAGGTCAAGAAACTTTGAGAAGAGGGAAAACATGCAGAATGGAGAATTTCCAAATAATGTTTCAGCGAGTCAACCTACTGGACCGAAATTGAGTCCACCAGCTCCAAGTAGTACACCCCTCCCAACAACTTTAGTCCTAGCATGCCTCCTCACAACCATGCTGGAATACCCCAAGGCAACTATCCGGGAGGATATCCGAACAATTTTAACAGACCACTGCCTCCGCCACCACCATACAACTTCAACAGCCCACCACCACCTCCTCACAACTTTAACAGACCACCACCGCAAAACAACTTTAACGGACCACCACCACCATCAAATCCTGGGGGAGCACCGCCAAAGCAACTATTGGGGTGCACCACAGCCAAACTTCAGCAGGCCGCCTGCACAGAACAACTGTGGAGGGATGCAACCTAACGCTGGTGGATGGTCTAATAATGTGCATAACAATCAACAAGAATGGTCGCCAACTGGTCAGGGAAGTCTCAAACTTACGTAA

Protein sequence

MATQLFSLFSRSFLTPPQSPISVSSHSSSSLLRRLPPLAAILTADFPSLCCTEQLPKVRWVLPDSYLDVKNKDYGGGPFINGQAAPYDSKYHEEWIRNNAKANSRRDVNGRRNFDRSRNFEKRENMQNGEFPNNVSASQPTGPKLSPPAPSSTPLPTTLVLACLLTTMLEYPKATIREDIRTILTDHCLRHHHTTSTAHHHLLTTLTDHHRKTTLTDHHHHQILGEHRQSNYWGAPQPNFSRPPAQNNCGGMQPNAGGWSNNVHNNQQEWSPTGQGSLKLT

Homology

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BLAST of CsGy4G007940 vs. NCBI nr
Match: KGN53590.1 (hypothetical protein Csa_4G083640 [Cucumis sativus])

HSP 1 Score: 410.6 bits (1054), Expect = 4.3e-111
Identity = 279/281 (99.29%), Postives = 280/281 (99.64%), Query Frame = 0


Query: 1   MATQLFSLFSRSFLTPPQSPISVSSHSSSSLLRRLPPLAAILTADFPSLCCTEQLPKVRW 60
           MATQLFSLFSRSFLTPP+SPISVSSHSSSSLLRRLPPLAAILTADFPSLCCTEQLPKVRW
Sbjct: 1   MATQLFSLFSRSFLTPPESPISVSSHSSSSLLRRLPPLAAILTADFPSLCCTEQLPKVRW 60

Query: 61  VLPDSYLDVKNKDYGGGPFINGQAAPYDSKYHEEWIRNNAKANSRRXXXXXXXXXXXXXX 120
           VLPDSYLDVKNKDYGGGPFINGQAAPYDSKYHEEWIRNNAKANSRRXXXXXXXXXXXXXX
Sbjct: 61  VLPDSYLDVKNKDYGGGPFINGQAAPYDSKYHEEWIRNNAKANSRRXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXVSASQPTGPKLSPPAPSSTPLPTTLVLACLLTTMLEYPKATIREDI 180
           XXXXXXXXXXXXXXVSASQPTGPKLSPPAPSSTPLPTTLVLACLLTTMLEYPKATIREDI
Sbjct: 121 XXXXXXXXXXXXXXVSASQPTGPKLSPPAPSSTPLPTTLVLACLLTTMLEYPKATIREDI 180

Query: 181 RTILTDHCLRHHHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWGAPQPNF 240
           RTILTDHCLRHHHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX WGAPQPNF
Sbjct: 181 RTILTDHCLRHHHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYWGAPQPNF 240

Query: 241 SRPPAQNNCGGMQPNAGGWSNNVHNNQQEWSPTGQGSLKLT 282
           SRPPAQNNCGGMQPNAGGWSNNVHNNQQEWSPTGQGSLKLT
Sbjct: 241 SRPPAQNNCGGMQPNAGGWSNNVHNNQQEWSPTGQGSLKLT 281

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BLAST of CsGy4G007940 vs. NCBI nr
Match: XP_011654309.1 (PREDICTED: uncharacterized protein LOC105435331, partial [Cucumis sativus])

HSP 1 Score: 300.4 bits (768), Expect = 6.2e-78
Identity = 188/203 (92.61%), Postives = 190/203 (93.60%), Query Frame = 0


Query: 1   MATQLFSLFSRSFLTPPQSPISVSSHSSSSLLRRLPPLAAILTADFPSLCCTE------- 60
           MATQLFSLFSRSFLTPP+SPISVSSHSSSSLLRRLPPLAAILTADFPSLCCTE       
Sbjct: 1   MATQLFSLFSRSFLTPPESPISVSSHSSSSLLRRLPPLAAILTADFPSLCCTEREELLYP 60

Query: 61  ------QLPKVRWVLPDSYLDVKNKDYGGGPFINGQAAPYDSKYHEEWIRNNAKANSRRX 120
                 +LPKVRWVLPDSYLDVKNKDYGGGPFINGQAAPYDSKYHEEWIRNNAKANSRRX
Sbjct: 61  CTFSSSELPKVRWVLPDSYLDVKNKDYGGGPFINGQAAPYDSKYHEEWIRNNAKANSRRX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXVSASQPTGPKLSPPAPSSTPLPTTLVLACLLTT 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXVSASQPTGPKLSPPAPSSTPLPTTLVLACLLTT
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXVSASQPTGPKLSPPAPSSTPLPTTLVLACLLTT 180

Query: 181 MLEYPKATIREDIRTILTDHCLR 191
           MLEYPKATIREDIRTILTDHCLR
Sbjct: 181 MLEYPKATIREDIRTILTDHCLR 203

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BLAST of CsGy4G007940 vs. NCBI nr
Match: XP_008451723.1 (PREDICTED: multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like [Cucumis melo])

HSP 1 Score: 132.9 bits (333), Expect = 1.7e-27
Identity = 120/264 (45.45%), Postives = 124/264 (46.97%), Query Frame = 0


Query: 1   MATQLF--------SLFSRSFLTPPQSPISVSSHSSSSLLRRLPPLAAILTADF------ 60
           MATQ F        SLFSRSFLT   + ISVSSHSSSSLLRRL PLAAIL ADF      
Sbjct: 1   MATQRFSCSLPKTLSLFSRSFLTATGATISVSSHSSSSLLRRLRPLAAILAADFLCHSAA 60

Query: 61  PSL--------------------------------------------------------- 120
           PS+                                                         
Sbjct: 61  PSVRVFSTRSTSSSIKDPNPNSSSRPPKETILLDGCDFEHWLVVMEKPDDQLTRDEIIDT 120

Query: 121 -------------------------------CCT--------EQLPKVRWVLPDSYLDVK 155
                                          C          ++LPKVRWVLPDSYLDVK
Sbjct: 121 YIKTLAMVVGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYLDVK 180

[Close]

BLAST of CsGy4G007940 vs. NCBI nr
Match: XP_008451724.1 (PREDICTED: multiple organellar RNA editing factor 8, chloroplastic/mitochondrial [Cucumis melo])

HSP 1 Score: 119.8 bits (299), Expect = 1.5e-23
Identity = 123/268 (45.90%), Postives = 131/268 (48.88%), Query Frame = 0


Query: 1   MATQLF-----------SLFSRSFLTPPQSPISVSSHSSSSLLRRLPPLAAILTADF--- 60
           MATQLF           S FSRSFLT   + +S SSHSSSSLLRRL PLAAIL ADF   
Sbjct: 1   MATQLFSRSLPKTLIWTSTFSRSFLTATGAALSASSHSSSSLLRRLRPLAAILAADFRCH 60

Query: 61  ---PSL------------------------------------------------------ 120
              PS+                                                      
Sbjct: 61  SAAPSVRDFSTRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPDEQLTRDEI 120

Query: 121 ----------------------------------CCT--------EQLPKVRWVLPDSYL 155
                                             C          ++LPKVRWVLPDSYL
Sbjct: 121 IDSYIKTLAMVVGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYL 180

[Close]

BLAST of CsGy4G007940 vs. NCBI nr
Match: KGN53589.1 (hypothetical protein Csa_4G083630 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 1.5e-23
Identity = 136/302 (45.03%), Postives = 145/302 (48.01%), Query Frame = 0


Query: 1   MATQLF-----------SLFSRSFLTPPQSPISVSSHSSSSLLRRLPPLAAILTADF--- 60
           MAT LF           S FSRSFLT   + IS SS SSSSL+RRL PLAAIL ADF   
Sbjct: 1   MATHLFSRSLPKTLIWTSTFSRSFLTATGAAISASSPSSSSLIRRLRPLAAILAADFRCH 60

Query: 61  ---PSL------------------------------------------------------ 120
              PSL                                                      
Sbjct: 61  SAAPSLRDFSTRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPDEQLTRDEI 120

Query: 121 ----------------------------------CCT--------EQLPKVRWVLPDSYL 180
                                             C          ++LPKVRWVLPDSYL
Sbjct: 121 IDSYIKTLAMVVGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYL 180

Query: 181 DVKNKDYGGGPFINGQAAPYDSKYHEEWIRNNAKANSRRXXXXXXXXXXXXXXXXXXXXX 188
           DVKNKDYGG PFI+GQA PYD KYHEEWIRNNA+AN R XXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 DVKNKDYGGEPFIDGQAVPYDPKYHEEWIRNNARANERXXXXXXXXXXXXXXXXXXXXXX 240

[Close]

BLAST of CsGy4G007940 vs. TAIR10
Match: AT3G15000.1 (cobalt ion binding)

HSP 1 Score: 95.9 bits (237), Expect = 4.2e-20
Identity = 40/51 (78.43%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 53  EQLPKVRWVLPDSYLDVKNKDYGGGPFINGQAAPYDSKYHEEWIRNNAKAN 104
           ++L  VRWVLPDSYLDV+NKDYGG PFI+G+A PYD KYHEEWIRNNA+AN
Sbjct: 162 KELSNVRWVLPDSYLDVRNKDYGGEPFIDGKAVPYDPKYHEEWIRNNARAN 212

[Close]

BLAST of CsGy4G007940 vs. TAIR10
Match: AT1G53260.1 (LOCATED IN: endomembrane system)

HSP 1 Score: 95.5 bits (236), Expect = 5.5e-20
Identity = 40/52 (76.92%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 53  EQLPKVRWVLPDSYLDVKNKDYGGGPFINGQAAPYDSKYHEEWIRNNAKANS 105
           ++LPKV+WVLPDSYLD KNKDYGG PFI+G+A PYD KYHEEWIRNNA A +
Sbjct: 27  KELPKVKWVLPDSYLDGKNKDYGGEPFIDGKAVPYDPKYHEEWIRNNANATN 78

[Close]

BLAST of CsGy4G007940 vs. TAIR10
Match: AT1G11430.1 (plastid developmental protein DAG, putative)

HSP 1 Score: 63.2 bits (152), Expect = 3.0e-10
Identity = 29/52 (55.77%), Postives = 35/52 (67.31%), Query Frame = 0


Query: 55  LPKVRWVLPDSYLDVKNKDYGGGPFINGQAAPYDSKYHEEWIRNNAKANSRR 107
           LP V WVLPDSY+DVKNKDYGG  +ING+  P     ++   RNN K  S+R
Sbjct: 155 LPGVLWVLPDSYIDVKNKDYGGDKYINGEIIPCTYPTYQPKQRNNTKYQSKR 206

[Close]

BLAST of CsGy4G007940 vs. TAIR10
Match: AT1G72530.2 (plastid developmental protein DAG, putative)

HSP 1 Score: 58.2 bits (139), Expect = 9.8e-09
Identity = 23/55 (41.82%), Postives = 36/55 (65.45%), Query Frame = 0


Query: 55  LPKVRWVLPDSYLDVKNKDYG----GGPFINGQAAPYDSKYHEEWIRNNAKANSR 106
           LP V+WVLPDS++   +  YG    G PF++G+  PYD KYH +W+R+    +++
Sbjct: 121 LPDVKWVLPDSFIVDGDNRYGVFFAGEPFVDGEVVPYDEKYHADWLRDQTDEDAK 175

[Close]

BLAST of CsGy4G007940 vs. TAIR10
Match: AT3G06790.1 (plastid developmental protein DAG, putative)

HSP 1 Score: 53.5 bits (127), Expect = 2.4e-07
Identity = 22/37 (59.46%), Postives = 26/37 (70.27%), Query Frame = 0


Query: 50  CCTEQLPKVRWVLPDSYLDVKNKDYGGGPFINGQAAP 87
           C  + LP V WVLPDSYLDV NKDYGG  ++ G+  P
Sbjct: 156 CKVKALPGVLWVLPDSYLDVPNKDYGGDLYVEGKVIP 192

[Close]

BLAST of CsGy4G007940 vs. Swiss-Prot
Match: sp|Q9LKA5|MORF8_ARATH (Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MORF8 PE=1 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 7.6e-19
Identity = 40/51 (78.43%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 53  EQLPKVRWVLPDSYLDVKNKDYGGGPFINGQAAPYDSKYHEEWIRNNAKAN 104
           ++L  VRWVLPDSYLDV+NKDYGG PFI+G+A PYD KYHEEWIRNNA+AN
Sbjct: 162 KELSNVRWVLPDSYLDVRNKDYGGEPFIDGKAVPYDPKYHEEWIRNNARAN 212

[Close]

BLAST of CsGy4G007940 vs. Swiss-Prot
Match: sp|Q9CAH0|MORF7_ARATH (Multiple organellar RNA editing factor 7, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MORF7 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.2e-09
Identity = 23/51 (45.10%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 55  LPKVRWVLPDSYLDVKNKDYGGGPFINGQAAPYDSKYHEEWIRNNAKANSR 106
           LP V+WVLPDS++   +  YGG PF++G+  PYD KYH +W+R+    +++
Sbjct: 121 LPDVKWVLPDSFIVDGDNRYGGEPFVDGEVVPYDEKYHADWLRDQTDEDAK 171

[Close]

BLAST of CsGy4G007940 vs. Swiss-Prot
Match: sp|Q9LPZ1|MORF9_ARATH (Multiple organellar RNA editing factor 9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MORF9 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.5e-09
Identity = 29/52 (55.77%), Postives = 35/52 (67.31%), Query Frame = 0


Query: 55  LPKVRWVLPDSYLDVKNKDYGGGPFINGQAAPYDSKYHEEWIRNNAKANSRR 107
           LP V WVLPDSY+DVKNKDYGG  +ING+  P     ++   RNN K  S+R
Sbjct: 155 LPGVLWVLPDSYIDVKNKDYGGDKYINGEIIPCTYPTYQPKQRNNTKYQSKR 206

[Close]

BLAST of CsGy4G007940 vs. Swiss-Prot
Match: sp|Q38732|DAG_ANTMA (DAG protein, chloroplastic OS=Antirrhinum majus OX=4151 GN=DAG PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 8.7e-07
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 0


Query: 55  LPKVRWVLPDSYLDVKNKDYGGGPFINGQAAP 87
           LP V WVLPDSY+DVKNKDYGG  ++NG+  P
Sbjct: 154 LPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIP 185

[Close]

BLAST of CsGy4G007940 vs. Swiss-Prot
Match: sp|Q84JZ6|MORF3_ARATH (Multiple organellar RNA editing factor 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MORF3 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.3e-06
Identity = 22/37 (59.46%), Postives = 26/37 (70.27%), Query Frame = 0


Query: 50  CCTEQLPKVRWVLPDSYLDVKNKDYGGGPFINGQAAP 87
           C  + LP V WVLPDSYLDV NKDYGG  ++ G+  P
Sbjct: 156 CKVKALPGVLWVLPDSYLDVPNKDYGGDLYVEGKVIP 192

[Close]

BLAST of CsGy4G007940 vs. TrEMBL
Match: tr|A0A0A0KVH0|A0A0A0KVH0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G083640 PE=4 SV=1)

HSP 1 Score: 410.6 bits (1054), Expect = 2.8e-111
Identity = 279/281 (99.29%), Postives = 280/281 (99.64%), Query Frame = 0


Query: 1   MATQLFSLFSRSFLTPPQSPISVSSHSSSSLLRRLPPLAAILTADFPSLCCTEQLPKVRW 60
           MATQLFSLFSRSFLTPP+SPISVSSHSSSSLLRRLPPLAAILTADFPSLCCTEQLPKVRW
Sbjct: 1   MATQLFSLFSRSFLTPPESPISVSSHSSSSLLRRLPPLAAILTADFPSLCCTEQLPKVRW 60

Query: 61  VLPDSYLDVKNKDYGGGPFINGQAAPYDSKYHEEWIRNNAKANSRRXXXXXXXXXXXXXX 120
           VLPDSYLDVKNKDYGGGPFINGQAAPYDSKYHEEWIRNNAKANSRRXXXXXXXXXXXXXX
Sbjct: 61  VLPDSYLDVKNKDYGGGPFINGQAAPYDSKYHEEWIRNNAKANSRRXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXVSASQPTGPKLSPPAPSSTPLPTTLVLACLLTTMLEYPKATIREDI 180
           XXXXXXXXXXXXXXVSASQPTGPKLSPPAPSSTPLPTTLVLACLLTTMLEYPKATIREDI
Sbjct: 121 XXXXXXXXXXXXXXVSASQPTGPKLSPPAPSSTPLPTTLVLACLLTTMLEYPKATIREDI 180

Query: 181 RTILTDHCLRHHHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWGAPQPNF 240
           RTILTDHCLRHHHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX WGAPQPNF
Sbjct: 181 RTILTDHCLRHHHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYWGAPQPNF 240

Query: 241 SRPPAQNNCGGMQPNAGGWSNNVHNNQQEWSPTGQGSLKLT 282
           SRPPAQNNCGGMQPNAGGWSNNVHNNQQEWSPTGQGSLKLT
Sbjct: 241 SRPPAQNNCGGMQPNAGGWSNNVHNNQQEWSPTGQGSLKLT 281

[Close]

BLAST of CsGy4G007940 vs. TrEMBL
Match: tr|A0A1S3BSY7|A0A1S3BSY7_CUCME (multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103492930 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.1e-27
Identity = 120/264 (45.45%), Postives = 124/264 (46.97%), Query Frame = 0


Query: 1   MATQLF--------SLFSRSFLTPPQSPISVSSHSSSSLLRRLPPLAAILTADF------ 60
           MATQ F        SLFSRSFLT   + ISVSSHSSSSLLRRL PLAAIL ADF      
Sbjct: 1   MATQRFSCSLPKTLSLFSRSFLTATGATISVSSHSSSSLLRRLRPLAAILAADFLCHSAA 60

Query: 61  PSL--------------------------------------------------------- 120
           PS+                                                         
Sbjct: 61  PSVRVFSTRSTSSSIKDPNPNSSSRPPKETILLDGCDFEHWLVVMEKPDDQLTRDEIIDT 120

Query: 121 -------------------------------CCT--------EQLPKVRWVLPDSYLDVK 155
                                          C          ++LPKVRWVLPDSYLDVK
Sbjct: 121 YIKTLAMVVGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYLDVK 180

[Close]

BLAST of CsGy4G007940 vs. TrEMBL
Match: tr|A0A1S3BTA4|A0A1S3BTA4_CUCME (multiple organellar RNA editing factor 8, chloroplastic/mitochondrial OS=Cucumis melo OX=3656 GN=LOC103492931 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.0e-23
Identity = 123/268 (45.90%), Postives = 131/268 (48.88%), Query Frame = 0


Query: 1   MATQLF-----------SLFSRSFLTPPQSPISVSSHSSSSLLRRLPPLAAILTADF--- 60
           MATQLF           S FSRSFLT   + +S SSHSSSSLLRRL PLAAIL ADF   
Sbjct: 1   MATQLFSRSLPKTLIWTSTFSRSFLTATGAALSASSHSSSSLLRRLRPLAAILAADFRCH 60

Query: 61  ---PSL------------------------------------------------------ 120
              PS+                                                      
Sbjct: 61  SAAPSVRDFSTRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPDEQLTRDEI 120

Query: 121 ----------------------------------CCT--------EQLPKVRWVLPDSYL 155
                                             C          ++LPKVRWVLPDSYL
Sbjct: 121 IDSYIKTLAMVVGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYL 180

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BLAST of CsGy4G007940 vs. TrEMBL
Match: tr|A0A0A0KXM3|A0A0A0KXM3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G083630 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.0e-23
Identity = 136/302 (45.03%), Postives = 145/302 (48.01%), Query Frame = 0


Query: 1   MATQLF-----------SLFSRSFLTPPQSPISVSSHSSSSLLRRLPPLAAILTADF--- 60
           MAT LF           S FSRSFLT   + IS SS SSSSL+RRL PLAAIL ADF   
Sbjct: 1   MATHLFSRSLPKTLIWTSTFSRSFLTATGAAISASSPSSSSLIRRLRPLAAILAADFRCH 60

Query: 61  ---PSL------------------------------------------------------ 120
              PSL                                                      
Sbjct: 61  SAAPSLRDFSTRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPDEQLTRDEI 120

Query: 121 ----------------------------------CCT--------EQLPKVRWVLPDSYL 180
                                             C          ++LPKVRWVLPDSYL
Sbjct: 121 IDSYIKTLAMVVGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYL 180

Query: 181 DVKNKDYGGGPFINGQAAPYDSKYHEEWIRNNAKANSRRXXXXXXXXXXXXXXXXXXXXX 188
           DVKNKDYGG PFI+GQA PYD KYHEEWIRNNA+AN R XXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 DVKNKDYGGEPFIDGQAVPYDPKYHEEWIRNNARANERXXXXXXXXXXXXXXXXXXXXXX 240

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BLAST of CsGy4G007940 vs. TrEMBL
Match: tr|A0A1D1XJ04|A0A1D1XJ04_9ARAE (Uncharacterized protein At3g15000, mitochondrial (Fragment) OS=Anthurium amnicola OX=1678845 GN=At3g15000_0 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.9e-19
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 55  LPKVRWVLPDSYLDVKNKDYGGGPFINGQAAPYDSKYHEEWIRNNAKANSR 106
           LPKVRWVLPDSYLDVKNKDYGG PFINGQA PYD KYHEEW+RNNA+AN R
Sbjct: 186 LPKVRWVLPDSYLDVKNKDYGGEPFINGQAVPYDPKYHEEWVRNNARANER 236

The following BLAST results are available for this feature:

BLAST of CsGy4G007940 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53590.1	4.3e-111	99.29	hypothetical protein Csa_4G083640 [Cucumis sativus]	[more]
XP_011654309.1	6.2e-78	92.61	PREDICTED: uncharacterized protein LOC105435331, partial [Cucumis sativus]	[more]
XP_008451723.1	1.7e-27	45.45	PREDICTED: multiple organellar RNA editing factor 8, chloroplastic/mitochondrial...	[more]
XP_008451724.1	1.5e-23	45.90	PREDICTED: multiple organellar RNA editing factor 8, chloroplastic/mitochondrial...	[more]
KGN53589.1	1.5e-23	45.03	hypothetical protein Csa_4G083630 [Cucumis sativus]	[more]

BLAST of CsGy4G007940 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15000.1	4.2e-20	78.43	cobalt ion binding	[more]
AT1G53260.1	5.5e-20	76.92	LOCATED IN: endomembrane system	[more]
AT1G11430.1	3.0e-10	55.77	plastid developmental protein DAG, putative	[more]
AT1G72530.2	9.8e-09	41.82	plastid developmental protein DAG, putative	[more]
AT3G06790.1	2.4e-07	59.46	plastid developmental protein DAG, putative	[more]

BLAST of CsGy4G007940 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LKA5\|MORF8_ARATH	7.6e-19	78.43	Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial OS=Arabido...	[more]
sp\|Q9CAH0\|MORF7_ARATH	3.2e-09	45.10	Multiple organellar RNA editing factor 7, mitochondrial OS=Arabidopsis thaliana ...	[more]
sp\|Q9LPZ1\|MORF9_ARATH	5.5e-09	55.77	Multiple organellar RNA editing factor 9, chloroplastic OS=Arabidopsis thaliana ...	[more]
sp\|Q38732\|DAG_ANTMA	8.7e-07	68.75	DAG protein, chloroplastic OS=Antirrhinum majus OX=4151 GN=DAG PE=2 SV=1	[more]
sp\|Q84JZ6\|MORF3_ARATH	4.3e-06	59.46	Multiple organellar RNA editing factor 3, mitochondrial OS=Arabidopsis thaliana ...	[more]

BLAST of CsGy4G007940 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KVH0\|A0A0A0KVH0_CUCSA	2.8e-111	99.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G083640 PE=4 SV=1	[more]
tr\|A0A1S3BSY7\|A0A1S3BSY7_CUCME	1.1e-27	45.45	multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like OS=Cu...	[more]
tr\|A0A1S3BTA4\|A0A1S3BTA4_CUCME	1.0e-23	45.90	multiple organellar RNA editing factor 8, chloroplastic/mitochondrial OS=Cucumis...	[more]
tr\|A0A0A0KXM3\|A0A0A0KXM3_CUCSA	1.0e-23	45.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G083630 PE=4 SV=1	[more]
tr\|A0A1D1XJ04\|A0A1D1XJ04_9ARAE	1.9e-19	88.24	Uncharacterized protein At3g15000, mitochondrial (Fragment) OS=Anthurium amnicol...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0016554	cytidine to uridine editing

Vocabulary: **INTERPRO**
Term	Definition
IPR039206	MORF/ORRM1/DAG-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0016554	cytidine to uridine editing
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G007940.1	CsGy4G007940.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 234..281
None	No IPR available	PANTHER	PTHR31346:SF4	MULTIPLE ORGANELLAR RNA EDITING FACTOR 8, CHLOROPLASTIC/MITOCHONDRIAL	coord: 54..266
IPR039206	MORF/ORRM1/DAG-like	PANTHER	PTHR31346	FAMILY NOT NAMED	coord: 54..266

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G007940	Csa4G083640	Cucumber (Chinese Long) v2	cgybcuB165
CsGy4G007940	CSPI04G08080	Wild cucumber (PI 183967)	cgybcpiB168
CsGy4G007940	Cla97C07G136720	Watermelon (97103) v2	cgybwmbB304
CsGy4G007940	Carg13167	Silver-seed gourd	carcgybB0045

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G007940	Cucumber (Chinese Long) v3	cgybcucB171
CsGy4G007940	Cucumber (Chinese Long) v3	cgybcucB172
CsGy4G007940	Watermelon (97103) v2	cgybwmbB268
CsGy4G007940	Wax gourd	cgybwgoB352
CsGy4G007940	Wax gourd	cgybwgoB364
CsGy4G007940	Wax gourd	cgybwgoB402
CsGy4G007940	Cucumber (Gy14) v2	cgybcgybB120
CsGy4G007940	Cucurbita maxima (Rimu)	cgybcmaB498
CsGy4G007940	Cucurbita maxima (Rimu)	cgybcmaB520
CsGy4G007940	Cucurbita maxima (Rimu)	cgybcmaB551
CsGy4G007940	Cucurbita moschata (Rifu)	cgybcmoB467
CsGy4G007940	Cucurbita moschata (Rifu)	cgybcmoB491
CsGy4G007940	Cucurbita moschata (Rifu)	cgybcmoB524
CsGy4G007940	Cucurbita pepo (Zucchini)	cgybcpeB487
CsGy4G007940	Cucurbita pepo (Zucchini)	cgybcpeB512
CsGy4G007940	Cucurbita pepo (Zucchini)	cgybcpeB545
CsGy4G007940	Bottle gourd (USVL1VR-Ls)	cgyblsiB267
CsGy4G007940	Bottle gourd (USVL1VR-Ls)	cgyblsiB279
CsGy4G007940	Melon (DHL92) v3.5.1	cgybmeB266
CsGy4G007940	Melon (DHL92) v3.5.1	cgybmeB271
CsGy4G007940	Melon (DHL92) v3.6.1	cgybmedB264
CsGy4G007940	Melon (DHL92) v3.6.1	cgybmedB268
CsGy4G007940	Watermelon (Charleston Gray)	cgybwcgB302
CsGy4G007940	Watermelon (97103) v1	cgybwmB292
CsGy4G007940	Wild cucumber (PI 183967)	cgybcpiB174
CsGy4G007940	Silver-seed gourd	carcgybB0324
CsGy4G007940	Silver-seed gourd	carcgybB0652