Cla97C07G136720 (gene) Watermelon (97103) v2

NameCla97C07G136720
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Descriptionmultiple organellar RNA editing factor 8, chloroplastic/mitochondrial
LocationCla97Chr07 : 24178574 .. 24179404 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCTTGTTGAAGTGTCTCCCTTACCTGTTTGAGGACTCATTAAATGGTGTTGTGCTGGTCCACTTAATGGCTACAACTGTTTTGCCTTTAGTATGGAGTTCAGAACTGTTTTCTGATTTTCTGTGTACGTTTTTTCCTTTGGCAGGGGAGCCTTTTATTAACGGACAAGCTGTTCCGTATGACCCGAAGTACCACGAGGAATGGATTAGAAACAATGAGAGAGCAAAAGATAGGAATAGGCGCAGTGAAAGACCTCGCAATTTTGATAGGTCAAGAAACTTTGAGAGGAGGAGGGAAAACATGCAAAATAGAGAATTTCCAAATGCTTCGGCGAATGGACCAAACATGGGTGCACCACCAGATCCGAGTAGGATGCCTCCCAACAACTTTAGTCATGGCATGCCTCCTCACAACAGTGCTGGAATGCCCCAAGGCAACTATCCGGGTGGACTGCCGCCGCCGGTGAACAACTTTAACGGACCACCACCACCACCGAGCAACTTTAACAGACCACCACCACCGAACAACTTTAACAGACCACTGCCGCCGCCACCGAACAACTTTAATGGACAACCGCTGCCGCCACTGAACAACTTTAATGGACCACCGCCGCCACCACCACACAACTATGCACCACCACCACCAAACCCCGGAGGAGCACAACACAACTATGGAGGGCCACAGCCGAACAACTATTGGGGAGCACCACAGCCAAACAACTATGGACCTTCAAACTCCGGTGAGCCGCCTGCACAGAACAGCTATGGAGGGGTGCAATCTAACGCTGGTGGATGGTCTAGTAATTTGCGTAACAATCAACAAGAATAG

mRNA sequence

ATGTTCTTGTTGAAGTGTCTCCCTTACCTGTTTGAGGACTCATTAAATGGTGTTGTGCTGGTCCACTTAATGGCTACAACTGTTTTGCCTTTAGTATGGAGTTCAGAACTGTTTTCTGATTTTCTGTGTACGTTTTTTCCTTTGGCAGGGGAGCCTTTTATTAACGGACAAGCTGTTCCGTATGACCCGAAGTACCACGAGGAATGGATTAGAAACAATGAGAGAGCAAAAGATAGGAATAGGCGCAGTGAAAGACCTCGCAATTTTGATAGGTCAAGAAACTTTGAGAGGAGGAGGGAAAACATGCAAAATAGAGAATTTCCAAATGCTTCGGCGAATGGACCAAACATGGGTGCACCACCAGATCCGAGTAGGATGCCTCCCAACAACTTTAGTCATGGCATGCCTCCTCACAACAGTGCTGGAATGCCCCAAGGCAACTATCCGGGTGGACTGCCGCCGCCGGTGAACAACTTTAACGGACCACCACCACCACCGAGCAACTTTAACAGACCACCACCACCGAACAACTTTAACAGACCACTGCCGCCGCCACCGAACAACTTTAATGGACAACCGCTGCCGCCACTGAACAACTTTAATGGACCACCGCCGCCACCACCACACAACTATGCACCACCACCACCAAACCCCGGAGGAGCACAACACAACTATGGAGGGCCACAGCCGAACAACTATTGGGGAGCACCACAGCCAAACAACTATGGACCTTCAAACTCCGGTGAGCCGCCTGCACAGAACAGCTATGGAGGGGTGCAATCTAACGCTGGTGGATGGTCTAGTAATTTGCGTAACAATCAACAAGAATAG

Coding sequence (CDS)

ATGTTCTTGTTGAAGTGTCTCCCTTACCTGTTTGAGGACTCATTAAATGGTGTTGTGCTGGTCCACTTAATGGCTACAACTGTTTTGCCTTTAGTATGGAGTTCAGAACTGTTTTCTGATTTTCTGTGTACGTTTTTTCCTTTGGCAGGGGAGCCTTTTATTAACGGACAAGCTGTTCCGTATGACCCGAAGTACCACGAGGAATGGATTAGAAACAATGAGAGAGCAAAAGATAGGAATAGGCGCAGTGAAAGACCTCGCAATTTTGATAGGTCAAGAAACTTTGAGAGGAGGAGGGAAAACATGCAAAATAGAGAATTTCCAAATGCTTCGGCGAATGGACCAAACATGGGTGCACCACCAGATCCGAGTAGGATGCCTCCCAACAACTTTAGTCATGGCATGCCTCCTCACAACAGTGCTGGAATGCCCCAAGGCAACTATCCGGGTGGACTGCCGCCGCCGGTGAACAACTTTAACGGACCACCACCACCACCGAGCAACTTTAACAGACCACCACCACCGAACAACTTTAACAGACCACTGCCGCCGCCACCGAACAACTTTAATGGACAACCGCTGCCGCCACTGAACAACTTTAATGGACCACCGCCGCCACCACCACACAACTATGCACCACCACCACCAAACCCCGGAGGAGCACAACACAACTATGGAGGGCCACAGCCGAACAACTATTGGGGAGCACCACAGCCAAACAACTATGGACCTTCAAACTCCGGTGAGCCGCCTGCACAGAACAGCTATGGAGGGGTGCAATCTAACGCTGGTGGATGGTCTAGTAATTTGCGTAACAATCAACAAGAATAG

Protein sequence

MFLLKCLPYLFEDSLNGVVLVHLMATTVLPLVWSSELFSDFLCTFFPLAGEPFINGQAVPYDPKYHEEWIRNNERAKDRNRRSERPRNFDRSRNFERRRENMQNREFPNASANGPNMGAPPDPSRMPPNNFSHGMPPHNSAGMPQGNYPGGLPPPVNNFNGPPPPPSNFNRPPPPNNFNRPLPPPPNNFNGQPLPPLNNFNGPPPPPPHNYAPPPPNPGGAQHNYGGPQPNNYWGAPQPNNYGPSNSGEPPAQNSYGGVQSNAGGWSSNLRNNQQE
BLAST of Cla97C07G136720 vs. NCBI nr
Match: XP_008451724.1 (PREDICTED: multiple organellar RNA editing factor 8, chloroplastic/mitochondrial [Cucumis melo])

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-10
Identity = 71/88 (80.68%), Postives = 71/88 (80.68%), Query Frame = 0

Query: 50  GEPFINGQAVPYDPKYHEEWIRNNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPN 109
           GEPFINGQAVPYDPKYHEEWIRNN       XXXXXXXXXXXXXXXXXXXXXXXXXXFPN
Sbjct: 189 GEPFINGQAVPYDPKYHEEWIRNNARANERNXXXXXXXXXXXXXXXXXXXXXXXXXXFPN 248

Query: 110 ASAN---GPNMGAPPDPSRMPPNNFSHG 135
            SAN   GPNM A   PS MPPNNFS G
Sbjct: 249 PSANQPTGPNMSAQA-PSSMPPNNFSPG 275

BLAST of Cla97C07G136720 vs. NCBI nr
Match: XP_022984463.1 (multiple organellar RNA editing factor 8, chloroplastic/mitochondrial isoform X1 [Cucurbita maxima])

HSP 1 Score: 75.5 bits (184), Expect = 3.2e-10
Identity = 69/89 (77.53%), Postives = 71/89 (79.78%), Query Frame = 0

Query: 50  GEPFINGQAVPYDPKYHEEWIRNNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPN 109
           GEPFINGQAVPYDPKYHEEWIRNN      XXXXXXXXXXXXXXXXXXXXXXXXXXX  N
Sbjct: 189 GEPFINGQAVPYDPKYHEEWIRNNARANERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN 248

Query: 110 ASANGPN--MGAPPDPSRMPPNNFSHGMP 137
           AS N P     +PP PS MPPNNF+ GMP
Sbjct: 249 ASPNQPTGXXMSPPAPSNMPPNNFNAGMP 277

BLAST of Cla97C07G136720 vs. NCBI nr
Match: XP_022984464.1 (multiple organellar RNA editing factor 8, chloroplastic/mitochondrial isoform X2 [Cucurbita maxima])

HSP 1 Score: 75.5 bits (184), Expect = 3.2e-10
Identity = 69/89 (77.53%), Postives = 71/89 (79.78%), Query Frame = 0

Query: 50  GEPFINGQAVPYDPKYHEEWIRNNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPN 109
           GEPFINGQAVPYDPKYHEEWIRNN      XXXXXXXXXXXXXXXXXXXXXXXXXXX  N
Sbjct: 189 GEPFINGQAVPYDPKYHEEWIRNNARANERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN 248

Query: 110 ASANGPN--MGAPPDPSRMPPNNFSHGMP 137
           AS N P     +PP PS MPPNNF+ GMP
Sbjct: 249 ASPNQPTGXXMSPPAPSNMPPNNFNAGMP 277

BLAST of Cla97C07G136720 vs. NCBI nr
Match: XP_023552822.1 (multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 75.5 bits (184), Expect = 3.2e-10
Identity = 69/89 (77.53%), Postives = 71/89 (79.78%), Query Frame = 0

Query: 50  GEPFINGQAVPYDPKYHEEWIRNNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPN 109
           GEPFINGQAVPYDPKYHEEWIRNN      XXXXXXXXXXXXXXXXXXXXXXXXXXX  N
Sbjct: 189 GEPFINGQAVPYDPKYHEEWIRNNARANERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN 248

Query: 110 ASANGPN--MGAPPDPSRMPPNNFSHGMP 137
           AS N P     +PP PS MPPNNF+ GMP
Sbjct: 249 ASPNQPTGXXMSPPAPSNMPPNNFNAGMP 277

BLAST of Cla97C07G136720 vs. NCBI nr
Match: XP_011653303.1 (PREDICTED: uncharacterized protein At3g15000, mitochondrial [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 4.2e-10
Identity = 73/102 (71.57%), Postives = 75/102 (73.53%), Query Frame = 0

Query: 50  GEPFINGQAVPYDPKYHEEWIRNNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPN 109
           GEPFI+GQAVPYDPKYHEEWIRNN      XXXXXXXXXXXXXXXXXXXXXXXXXXX  N
Sbjct: 189 GEPFIDGQAVPYDPKYHEEWIRNNARANERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN 248

Query: 110 ASANGPNMGAPPDPSRMPPNNFSHGMPPHXXXXXXXXXYPGG 152
             A GPNM AP  P  MPPNNF+  MPPH         YPGG
Sbjct: 249 -PATGPNMSAPA-PGGMPPNNFNPSMPPH----NRQGDYPGG 284

BLAST of Cla97C07G136720 vs. TrEMBL
Match: tr|A0A1S3BTA4|A0A1S3BTA4_CUCME (multiple organellar RNA editing factor 8, chloroplastic/mitochondrial OS=Cucumis melo OX=3656 GN=LOC103492931 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 7.3e-11
Identity = 71/88 (80.68%), Postives = 71/88 (80.68%), Query Frame = 0

Query: 50  GEPFINGQAVPYDPKYHEEWIRNNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPN 109
           GEPFINGQAVPYDPKYHEEWIRNN       XXXXXXXXXXXXXXXXXXXXXXXXXXFPN
Sbjct: 189 GEPFINGQAVPYDPKYHEEWIRNNARANERNXXXXXXXXXXXXXXXXXXXXXXXXXXFPN 248

Query: 110 ASAN---GPNMGAPPDPSRMPPNNFSHG 135
            SAN   GPNM A   PS MPPNNFS G
Sbjct: 249 PSANQPTGPNMSAQA-PSSMPPNNFSPG 275

BLAST of Cla97C07G136720 vs. TrEMBL
Match: tr|A0A1S3BSY7|A0A1S3BSY7_CUCME (multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103492930 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.7e-07
Identity = 55/86 (63.95%), Postives = 58/86 (67.44%), Query Frame = 0

Query: 50  GEPFINGQAVPYDPKYHEEWIRNNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPN 109
           GEPFINGQAVPYDPKYHEEWIRNN                 XXXXXXXXXXXXXXXXFPN
Sbjct: 186 GEPFINGQAVPYDPKYHEEWIRNN--AKIRRPDVNGRRNFDXXXXXXXXXXXXXXXXFPN 245

Query: 110 ----ASANGPNMGAPPDPSRMPPNNF 132
               +   GP + +PP PS MPPNNF
Sbjct: 246 NVSASQPTGPKL-SPPAPSSMPPNNF 268

BLAST of Cla97C07G136720 vs. TrEMBL
Match: tr|M0WU14|M0WU14_HORVV (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 6.4e-07
Identity = 35/78 (44.87%), Postives = 46/78 (58.97%), Query Frame = 0

Query: 9  YLFEDSLNGVVLVHLMATTVLP----LVWSSELFSDFLC---------TFFPLAGEPFIN 68
          Y+F+D L         A+  LP    ++ +  LFS F+C          F  ++GEPFI+
Sbjct: 19 YVFDDLLR-------WASFNLPFLPWIILACALFSVFICVICKESVSDAFLCISGEPFID 78

Query: 69 GQAVPYDPKYHEEWIRNN 74
          GQAVPYDPKYHEEW+RNN
Sbjct: 79 GQAVPYDPKYHEEWVRNN 89

BLAST of Cla97C07G136720 vs. TrEMBL
Match: tr|K4A186|K4A186_SETIT (Uncharacterized protein OS=Setaria italica OX=4555 GN=SETIT_032628mg PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.2e-06
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0

Query: 50  GEPFINGQAVPYDPKYHEEWIRNNE 75
           GEPFINGQAVPYDPKYHEEW+RNNE
Sbjct: 179 GEPFINGQAVPYDPKYHEEWVRNNE 203

BLAST of Cla97C07G136720 vs. TrEMBL
Match: tr|M1B8T5|M1B8T5_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102603996 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.2e-06
Identity = 24/26 (92.31%), Postives = 26/26 (100.00%), Query Frame = 0

Query: 48 LAGEPFINGQAVPYDPKYHEEWIRNN 74
          +AGEPFINGQAVPYDPKYHEEW+RNN
Sbjct: 3  VAGEPFINGQAVPYDPKYHEEWVRNN 28

BLAST of Cla97C07G136720 vs. Swiss-Prot
Match: sp|Q9LKA5|MORF8_ARATH (Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MORF8 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.0e-07
Identity = 22/24 (91.67%), Postives = 24/24 (100.00%), Query Frame = 0

Query: 50  GEPFINGQAVPYDPKYHEEWIRNN 74
           GEPFI+G+AVPYDPKYHEEWIRNN
Sbjct: 185 GEPFIDGKAVPYDPKYHEEWIRNN 208

BLAST of Cla97C07G136720 vs. TAIR10
Match: AT1G53260.1 (LOCATED IN: endomembrane system)

HSP 1 Score: 56.6 bits (135), Expect = 2.8e-08
Identity = 22/24 (91.67%), Postives = 24/24 (100.00%), Query Frame = 0

Query: 50 GEPFINGQAVPYDPKYHEEWIRNN 74
          GEPFI+G+AVPYDPKYHEEWIRNN
Sbjct: 50 GEPFIDGKAVPYDPKYHEEWIRNN 73

BLAST of Cla97C07G136720 vs. TAIR10
Match: AT3G15000.1 (cobalt ion binding)

HSP 1 Score: 56.6 bits (135), Expect = 2.8e-08
Identity = 22/24 (91.67%), Postives = 24/24 (100.00%), Query Frame = 0

Query: 50  GEPFINGQAVPYDPKYHEEWIRNN 74
           GEPFI+G+AVPYDPKYHEEWIRNN
Sbjct: 185 GEPFIDGKAVPYDPKYHEEWIRNN 208

BLAST of Cla97C07G136720 vs. TAIR10
Match: AT1G72530.2 (plastid developmental protein DAG, putative)

HSP 1 Score: 45.1 bits (105), Expect = 8.4e-05
Identity = 15/24 (62.50%), Postives = 21/24 (87.50%), Query Frame = 0

Query: 49  AGEPFINGQAVPYDPKYHEEWIRN 73
           AGEPF++G+ VPYD KYH +W+R+
Sbjct: 145 AGEPFVDGEVVPYDEKYHADWLRD 168

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008451724.11.1e-1080.68PREDICTED: multiple organellar RNA editing factor 8, chloroplastic/mitochondrial... [more]
XP_022984463.13.2e-1077.53multiple organellar RNA editing factor 8, chloroplastic/mitochondrial isoform X1... [more]
XP_022984464.13.2e-1077.53multiple organellar RNA editing factor 8, chloroplastic/mitochondrial isoform X2... [more]
XP_023552822.13.2e-1077.53multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like [Cucu... [more]
XP_011653303.14.2e-1071.57PREDICTED: uncharacterized protein At3g15000, mitochondrial [Cucumis sativus][more]
Match NameE-valueIdentityDescription
tr|A0A1S3BTA4|A0A1S3BTA4_CUCME7.3e-1180.68multiple organellar RNA editing factor 8, chloroplastic/mitochondrial OS=Cucumis... [more]
tr|A0A1S3BSY7|A0A1S3BSY7_CUCME1.7e-0763.95multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like OS=Cu... [more]
tr|M0WU14|M0WU14_HORVV6.4e-0744.87Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1[more]
tr|K4A186|K4A186_SETIT3.2e-0696.00Uncharacterized protein OS=Setaria italica OX=4555 GN=SETIT_032628mg PE=4 SV=1[more]
tr|M1B8T5|M1B8T5_SOLTU3.2e-0692.31Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102603996 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
sp|Q9LKA5|MORF8_ARATH5.0e-0791.67Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial OS=Arabido... [more]
Match NameE-valueIdentityDescription
AT1G53260.12.8e-0891.67LOCATED IN: endomembrane system[more]
AT3G15000.12.8e-0891.67cobalt ion binding[more]
AT1G72530.28.4e-0562.50plastid developmental protein DAG, putative[more]
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0016554cytidine to uridine editing
Vocabulary: INTERPRO
TermDefinition
IPR039206MORF/ORRM1/DAG-like
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0016554 cytidine to uridine editing
biological_process GO:0080156 mitochondrial mRNA modification
biological_process GO:0009451 RNA modification
cellular_component GO:0031410 cytoplasmic vesicle
cellular_component GO:0005575 cellular_component
cellular_component GO:0009507 chloroplast
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009536 plastid
molecular_function GO:0003674 molecular_function
molecular_function GO:0050897 cobalt ion binding
molecular_function GO:0005515 protein binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C07G136720.1Cla97C07G136720.1mRNA


Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..276
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 148..221
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 224..276
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..104
NoneNo IPR availablePANTHERPTHR31346:SF4MULTIPLE ORGANELLAR RNA EDITING FACTOR 8, CHLOROPLASTIC/MITOCHONDRIALcoord: 50..168
IPR039206MORF/ORRM1/DAG-likePANTHERPTHR31346FAMILY NOT NAMEDcoord: 50..168

The following gene(s) are paralogous to this gene:

None