CsGy4G002100 (gene) Cucumber (Gy14) v2

Overview
NameCsGy4G002100
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Description50S ribosomal protein L18
LocationChr4 : 1237534 .. 1239647 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAATAGTAAAATAAATTAAAATATTTGGAAAGGAAAATTCTAGATTATGAAATTACAATTTGGTATGGTAAATATTTTATAAATTCTTAAAAATTTCACAAAATTAAAAAAAGTAGATAAAAATAAAAGACGGATTTCTACTTCTTTGTCTCTCTTCCTCTTATTCCCTTTTCCTTCTTCTCCTCCACGGCGGCGTAGTGCTGTGTGGTGACGGCGAGATTAGCGACGATTTGTAGTTTCTACTTCTGCTTCTGCAAGCAATCGGCTGTCAGGTACGAAAATCATCCTCTTGTAATCGGTATCTATAAATTTCTCTCTCACTCAAACAACCCAGATCGTTCTTTCTCTCTTTCTTCTTTTCAATGCACTTTTTTTACAGGGTTTTTAGTTTGTTGTTGTAGAATACAGATGGGTTTTGATAAGTTGTGTTCATCTTTGCTTTCTATCATTTCTTGTTCTGATTAATTTTAGGCTTATGCGAACAAGTAGAAAGAAAGAGACTGATAGGAGGGATTTGGGTTGGGTTTTTTTTATGTTTAATTTTTGTCAGATTGTCGATTTTTTACTCTTGTACTCAAAAAAATTCTAATTTTCACAATACGCGAGGTTTTAATGGGCAGGGATTTACTGTGGCTGTGAAAACTGGTTTGACAAAGGATTTGGGTGTTCATCCTATAGCGGCTGAAGAATTTGTCACCATGCGAACTCCTACAAGGGAGATTCGTAGAAATCCTGAGGTTTGTTGACAATTGTAAGCCTGTGCTGGTTGACCAATTTGCAATTTTTTATGCTTCGACTAATAAATAATGGATCATTGCCTTTTAACAATTTAGAATGCACAAATTGGCTCGGAAACTGATATCATACGGGTTACTATCTGTTAGGAGAAGTCAGAATCTGAGGCTAAAGATGCAGCAGGGGTATAAAACGGATGCAAGCTTAATCAATTTGTAATTCGAAAACTTTAGTCAGTCCTTTCAGGTATCCACTCTCTTGACCTACGTACCATTTATTGAGTTCTTTACAAATGTGATGTAACTTTCATTGGATTTGTTTCCACTGCTCTGCTACTACAAAGTTTATTACTTTCAGAGCTAGAAATGTTGATGTCAAGTTTATTGATTAAGTGTTATTTGATCCAGAAGTTGAGAAAATACCATGAAACTATGATGATATACTTTTACGTCAGTGAACCTAAAATTGAAATGTCCATATATTTTCAAAGCCATGGAATCACTTTTTTGGTGTATCCACTTGAGATTATGTTGAAAATGGATAATTGAAAAACAAGCAATGCTGATATTAGTTAGATTCCATCTGAATGCCACTGGAAATCTGTAGATTACTCTACAAAGTTCATTCACAGAGAGTATAGCCATCAGAGAAGGATATGGTCAATGGAGAATAAGGGAATTTTTCTTTACTTTTTGGTGTCAAGGGATGGAAGTTTTAGGCTATTTGAAAGACGTGAATCCACAAACCTTAGTTTGTTACAATGTATTTGTTCTTAAGTGTTGTAATCTTCTTAGCTTTGAATGGGAAGTAAAAAAATACTATGTGTATATGCTTATCATCCAGCGTTTTGAGCCTGAACTATACATTTATTTTTTCTTCATACTAATCCACGAACGTTATTCTACCGCTTTTTGCTACTCTGATAACTCATGGAACGTTTTAACATTTCAGATAGGTAACAGGGATTTTGAGAAAATCGCTGCTGGGAATGACGCTATTAAAGCGCTATGTGTTGCGATTATTCTTATCTTTGAAGTACATAACAGCGAATGTGGTAGATAGAAACAATGGACGAGTCGTTGCAACTGCATCCACAGTGGAACACTCCATAAAAAACTCACTTGAATGTGGCCGGTCTTGTAATGCTAAGGCAGCAGCAATTGTTGGAGAGGTGTTGGCTATGCGACTCAAAGTTGATGGTCTCGAACAGGGGCAAGGAAGAGGGATTCACGCAGACATAAAAAAAGAAATTGAGAAGAAAGGCTTCAAAAACCACACAAAAATCTGGGCTATAGTGAACTCACTAAAGAATAACGGAGTTAAACTCATTCTCGACAACAATGTCGACGACGATGCAGCTCAATCGAACTATCAATAA

mRNA sequence

AAAATAGTAAAATAAATTAAAATATTTGGAAAGGAAAATTCTAGATTATGAAATTACAATTTGGTATGGTAAATATTTTATAAATTCTTAAAAATTTCACAAAATTAAAAAAAGTAGATAAAAATAAAAGACGGATTTCTACTTCTTTGTCTCTCTTCCTCTTATTCCCTTTTCCTTCTTCTCCTCCACGGCGGCGTAGTGCTGTGTGGTGACGGCGAGATTAGCGACGATTTGTAGTTTCTACTTCTGCTTCTGCAAGCAATCGGCTGTCAGGGATTTACTGTGGCTGTGAAAACTGGTTTGACAAAGGATTTGGGTGTTCATCCTATAGCGGCTGAAGAATTTGTCACCATGCGAACTCCTACAAGGGAGATTCGTAGAAATCCTGAGGAGAAGTCAGAATCTGAGGCTAAAGATGCAGCAGGGGTAACAGGGATTTTGAGAAAATCGCTGCTGGGAATGACGCTATTAAAGCGCTATGTGTTGCGATTATTCTTATCTTTGAAGTACATAACAGCGAATGTGGTAGATAGAAACAATGGACGAGTCGTTGCAACTGCATCCACAGTGGAACACTCCATAAAAAACTCACTTGAATGTGGCCGGTCTTGTAATGCTAAGGCAGCAGCAATTGTTGGAGAGGTGTTGGCTATGCGACTCAAAGTTGATGGTCTCGAACAGGGGCAAGGAAGAGGGATTCACGCAGACATAAAAAAAGAAATTGAGAAGAAAGGCTTCAAAAACCACACAAAAATCTGGGCTATAGTGAACTCACTAAAGAATAACGGAGTTAAACTCATTCTCGACAACAATGTCGACGACGATGCAGCTCAATCGAACTATCAATAA

Coding sequence (CDS)

ATGCGAACTCCTACAAGGGAGATTCGTAGAAATCCTGAGGAGAAGTCAGAATCTGAGGCTAAAGATGCAGCAGGGGTAACAGGGATTTTGAGAAAATCGCTGCTGGGAATGACGCTATTAAAGCGCTATGTGTTGCGATTATTCTTATCTTTGAAGTACATAACAGCGAATGTGGTAGATAGAAACAATGGACGAGTCGTTGCAACTGCATCCACAGTGGAACACTCCATAAAAAACTCACTTGAATGTGGCCGGTCTTGTAATGCTAAGGCAGCAGCAATTGTTGGAGAGGTGTTGGCTATGCGACTCAAAGTTGATGGTCTCGAACAGGGGCAAGGAAGAGGGATTCACGCAGACATAAAAAAAGAAATTGAGAAGAAAGGCTTCAAAAACCACACAAAAATCTGGGCTATAGTGAACTCACTAAAGAATAACGGAGTTAAACTCATTCTCGACAACAATGTCGACGACGATGCAGCTCAATCGAACTATCAATAA

Protein sequence

MRTPTREIRRNPEEKSESEAKDAAGVTGILRKSLLGMTLLKRYVLRLFLSLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADIKKEIEKKGFKNHTKIWAIVNSLKNNGVKLILDNNVDDDAAQSNYQ
Homology
[Close]
BLAST of CsGy4G002100 vs. NCBI nr
Match: KGN52952.1 (hypothetical protein Csa_4G007080 [Cucumis sativus])

HSP 1 Score: 313.9 bits (803), Expect = 3.2e-82
Identity = 164/165 (99.39%), Postives = 165/165 (100.00%), Query Frame = 0 

Query: 1   MRTPTREIRRNPEEKSESEAKDAAGVTGILRKSLLGMTLLKRYVLRLFLSLKYITANVVD 60
           MRTPTREIRRNPEEKSESEAKDAAGVTGILRKSLLGMTLLKRYVLRLFLSLKYITANVVD
Sbjct: 56  MRTPTREIRRNPEEKSESEAKDAAGVTGILRKSLLGMTLLKRYVLRLFLSLKYITANVVD 115

Query: 61  RNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADI 120
           RNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADI
Sbjct: 116 RNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADI 175

Query: 121 KKEIEKKGFKNHTKIWAIVNSLKNNGVKLILDNNVDDDAAQSNYQ 166
           KKEIEKKGFKNHTKIWAIVNSLKNNGVKLILDNNVDD+AAQSNYQ
Sbjct: 176 KKEIEKKGFKNHTKIWAIVNSLKNNGVKLILDNNVDDNAAQSNYQ 220

[Close]
BLAST of CsGy4G002100 vs. NCBI nr
Match: XP_011653002.1 (PREDICTED: uncharacterized protein LOC101206481 [Cucumis sativus])

HSP 1 Score: 248.4 bits (633), Expect = 1.6e-62
Identity = 128/129 (99.22%), Postives = 129/129 (100.00%), Query Frame = 0 

Query: 37  MTLLKRYVLRLFLSLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVG 96
           MTLLKRYVLRLFLSLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVG
Sbjct: 1   MTLLKRYVLRLFLSLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVG 60

Query: 97  EVLAMRLKVDGLEQGQGRGIHADIKKEIEKKGFKNHTKIWAIVNSLKNNGVKLILDNNVD 156
           EVLAMRLKVDGLEQGQGRGIHADIKKEIEKKGFKNHTKIWAIVNSLKNNGVKLILDNNVD
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHADIKKEIEKKGFKNHTKIWAIVNSLKNNGVKLILDNNVD 120

Query: 157 DDAAQSNYQ 166
           D+AAQSNYQ
Sbjct: 121 DNAAQSNYQ 129

[Close]
BLAST of CsGy4G002100 vs. NCBI nr
Match: XP_016902998.1 (PREDICTED: uncharacterized protein LOC103501501 [Cucumis melo])

HSP 1 Score: 240.4 bits (612), Expect = 4.5e-60
Identity = 123/129 (95.35%), Postives = 127/129 (98.45%), Query Frame = 0 

Query: 37  MTLLKRYVLRLFLSLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVG 96
           MT+LKRYVLRLF+SLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVG
Sbjct: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVG 60

Query: 97  EVLAMRLKVDGLEQGQGRGIHADIKKEIEKKGFKNHTKIWAIVNSLKNNGVKLILDNNVD 156
           EVLAMRLKVDGLEQGQGRGIHADI KEIEKKGF+N TKIWAIVNSLKNNGVKLIL+NNVD
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIWAIVNSLKNNGVKLILNNNVD 120

Query: 157 DDAAQSNYQ 166
           DDAAQSNYQ
Sbjct: 121 DDAAQSNYQ 129

[Close]
BLAST of CsGy4G002100 vs. NCBI nr
Match: XP_022943852.1 (uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943853.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943854.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943855.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943856.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943857.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943858.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943860.1 uncharacterized protein LOC111448460 [Cucurbita moschata])

HSP 1 Score: 223.4 bits (568), Expect = 5.7e-55
Identity = 114/129 (88.37%), Postives = 123/129 (95.35%), Query Frame = 0 

Query: 37  MTLLKRYVLRLFLSLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVG 96
           MT+LKRYV+RLF+SLKYITANVVDRNNGR+VATASTVEHSIK SLECGRSCNAKAAA+VG
Sbjct: 1   MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60

Query: 97  EVLAMRLKVDGLEQGQGRGIHADIKKEIEKKGFKNHTKIWAIVNSLKNNGVKLILDNNVD 156
           EVLAMRLKVDGLEQGQGRGIH DI KEIEKKGFKN TKIWAIVNSLKNNGVKLILDNN D
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIVNSLKNNGVKLILDNN-D 120

Query: 157 DDAAQSNYQ 166
           DDA++ +Y+
Sbjct: 121 DDASRPSYE 128

[Close]
BLAST of CsGy4G002100 vs. NCBI nr
Match: XP_022985582.1 (uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985583.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985584.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985585.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985586.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985588.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985589.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985590.1 uncharacterized protein LOC111483610 [Cucurbita maxima])

HSP 1 Score: 223.0 bits (567), Expect = 7.4e-55
Identity = 114/129 (88.37%), Postives = 122/129 (94.57%), Query Frame = 0 

Query: 37  MTLLKRYVLRLFLSLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVG 96
           MT+LKRYV+RLF+SLKYITANVVDRNNGR+VATASTVEHSIK SLECGRSCNAKAAA+VG
Sbjct: 1   MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60

Query: 97  EVLAMRLKVDGLEQGQGRGIHADIKKEIEKKGFKNHTKIWAIVNSLKNNGVKLILDNNVD 156
           EVLAMRLKVDGLEQGQGRGIH DI KEIEKKGFKN TKIWAIVNSLKNNGVKLILDNN D
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIVNSLKNNGVKLILDNN-D 120

Query: 157 DDAAQSNYQ 166
           DDA + +Y+
Sbjct: 121 DDAVRPSYE 128

[Close]
BLAST of CsGy4G002100 vs. TAIR10
Match: AT3G45020.1 (Ribosomal L18p/L5e family protein)

HSP 1 Score: 196.4 bits (498), Expect = 1.3e-50
Identity = 94/111 (84.68%), Postives = 108/111 (97.30%), Query Frame = 0 

Query: 37  MTLLKRYVLRLFLSLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVG 96
           MT+LKRYVLRLF+S+KYITANVVDRNNGR+V TASTVEH+IKNSLECGR+CNAKAAAIVG
Sbjct: 1   MTVLKRYVLRLFMSIKYITANVVDRNNGRIVTTASTVEHTIKNSLECGRTCNAKAAAIVG 60

Query: 97  EVLAMRLKVDGLEQGQGRGIHADIKKEIEKKGFKNHTKIWAIVNSLKNNGV 148
           EVLAMRLKV+GL+ GQGRGIHAD+KKEIEKKGFK+ TK+WA++NSL+NNGV
Sbjct: 61  EVLAMRLKVEGLQDGQGRGIHADVKKEIEKKGFKSRTKVWAVINSLRNNGV 111

[Close]
BLAST of CsGy4G002100 vs. TAIR10
Match: AT5G27820.1 (Ribosomal L18p/L5e family protein)

HSP 1 Score: 44.3 bits (103), Expect = 8.6e-05
Identity = 30/111 (27.03%), Postives = 61/111 (54.95%), Query Frame = 0 

Query: 40  LKRYVLRLFLSLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVL 99
           LK YVL++  + K++ A V+      V  +AS+ E +++ +++  R  +  AA+ +G++L
Sbjct: 16  LKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDITR--DVAAASKIGKIL 75

Query: 100 AMRLKVDGLEQGQGRGIHADIKKEIEKKGFKNHTKIWAIVNSLKNNGVKLI 151
             RL +  +       +   +KKE      + H K+ A+++S++  GVKL+
Sbjct: 76  GERLLMKDIP-----AVTIQMKKE-----QRYHGKVKAVIDSVREAGVKLL 114

[Close]
BLAST of CsGy4G002100 vs. Swiss-Prot
Match: sp|B5YDV9|RL18_DICT6 (50S ribosomal protein L18 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) OX=309799 GN=rplR PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 9.7e-06
Identity = 39/120 (32.50%), Postives = 70/120 (58.33%), Query Frame = 0 

Query: 30  LRKSLLGMTLLKRYVLRLFLSLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNA 89
           +RK ++G +  +R  L ++ SL+YI A ++D   G  + +AS++E  I++ L+  +  N 
Sbjct: 18  IRKKIIGTS--ERPRLAVYKSLRYIYAQIIDDTKGHTLVSASSLEKEIRSQLKSTK--NI 77

Query: 90  KAAAIVGEVLAMRLKVDGLEQGQGRGIHADIKKEI-EKKGFKNHTKIWAIVNSLKNNGVK 149
           +AA +VGEV+A R     LE+G        IKK + ++ GF  H K+ A+ +S +  G++
Sbjct: 78  EAAKLVGEVIAKR----ALEKG--------IKKVVFDRGGFLYHGKVKALADSARAAGLE 121

[Close]
BLAST of CsGy4G002100 vs. Swiss-Prot
Match: sp|Q5F5U3|RL18_NEIG1 (50S ribosomal protein L18 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) OX=242231 GN=rplR PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 9.7e-06
Identity = 37/117 (31.62%), Postives = 62/117 (52.99%), Query Frame = 0 

Query: 31  RKSLLGMTLLKRYVLRLFLSLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAK 90
           RK+   +  LK   L +F S  +I A V+     +V+A AST+E  ++ SL+ G   N +
Sbjct: 12  RKTRARIADLKMVRLCVFRSNNHIYAQVISAEGDKVLAQASTLEAEVRGSLKSG--SNVE 71

Query: 91  AAAIVGEVLAMRLKVDGLEQGQGRGIHADIKKEIEKKGFKNHTKIWAIVNSLKNNGV 148
           AAAIVG+ +A + K  G+E           K   ++ GF+ H ++ A+  + + NG+
Sbjct: 72  AAAIVGKRIAEKAKAAGVE-----------KVAFDRSGFQYHGRVKALAEAARENGL 115

[Close]
BLAST of CsGy4G002100 vs. Swiss-Prot
Match: sp|A9M3V0|RL18_NEIM0 (50S ribosomal protein L18 OS=Neisseria meningitidis serogroup C (strain 053442) OX=374833 GN=rplR PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 9.7e-06
Identity = 37/117 (31.62%), Postives = 62/117 (52.99%), Query Frame = 0 

Query: 31  RKSLLGMTLLKRYVLRLFLSLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAK 90
           RK+   +  LK   L +F S  +I A V+     +V+A AST+E  ++ SL+ G   N +
Sbjct: 12  RKTRARIADLKMVRLCVFRSNNHIYAQVISAEGDKVLAQASTLEAEVRGSLKSG--SNVE 71

Query: 91  AAAIVGEVLAMRLKVDGLEQGQGRGIHADIKKEIEKKGFKNHTKIWAIVNSLKNNGV 148
           AAAIVG+ +A + K  G+E           K   ++ GF+ H ++ A+  + + NG+
Sbjct: 72  AAAIVGKRIAEKAKAAGVE-----------KVAFDRSGFQYHGRVKALAEAARENGL 115

[Close]
BLAST of CsGy4G002100 vs. Swiss-Prot
Match: sp|Q9JQQ6|RL18_NEIMA (50S ribosomal protein L18 OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) OX=122587 GN=rplR PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 9.7e-06
Identity = 37/117 (31.62%), Postives = 62/117 (52.99%), Query Frame = 0 

Query: 31  RKSLLGMTLLKRYVLRLFLSLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAK 90
           RK+   +  LK   L +F S  +I A V+     +V+A AST+E  ++ SL+ G   N +
Sbjct: 12  RKTRARIADLKMVRLCVFRSNNHIYAQVISAEGDKVLAQASTLEAEVRGSLKSG--SNVE 71

Query: 91  AAAIVGEVLAMRLKVDGLEQGQGRGIHADIKKEIEKKGFKNHTKIWAIVNSLKNNGV 148
           AAAIVG+ +A + K  G+E           K   ++ GF+ H ++ A+  + + NG+
Sbjct: 72  AAAIVGKRIAEKAKAAGVE-----------KVAFDRSGFQYHGRVKALAEAARENGL 115

[Close]
BLAST of CsGy4G002100 vs. Swiss-Prot
Match: sp|Q7DDT0|RL18_NEIMB (50S ribosomal protein L18 OS=Neisseria meningitidis serogroup B (strain MC58) OX=122586 GN=rplR PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 9.7e-06
Identity = 37/117 (31.62%), Postives = 62/117 (52.99%), Query Frame = 0 

Query: 31  RKSLLGMTLLKRYVLRLFLSLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAK 90
           RK+   +  LK   L +F S  +I A V+     +V+A AST+E  ++ SL+ G   N +
Sbjct: 12  RKTRARIADLKMVRLCVFRSNNHIYAQVISAEGDKVLAQASTLEAEVRGSLKSG--SNVE 71

Query: 91  AAAIVGEVLAMRLKVDGLEQGQGRGIHADIKKEIEKKGFKNHTKIWAIVNSLKNNGV 148
           AAAIVG+ +A + K  G+E           K   ++ GF+ H ++ A+  + + NG+
Sbjct: 72  AAAIVGKRIAEKAKAAGVE-----------KVAFDRSGFQYHGRVKALAEAARENGL 115

[Close]
BLAST of CsGy4G002100 vs. TrEMBL
Match: tr|A0A0A0KX15|A0A0A0KX15_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G007080 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 2.1e-82
Identity = 164/165 (99.39%), Postives = 165/165 (100.00%), Query Frame = 0 

Query: 1   MRTPTREIRRNPEEKSESEAKDAAGVTGILRKSLLGMTLLKRYVLRLFLSLKYITANVVD 60
           MRTPTREIRRNPEEKSESEAKDAAGVTGILRKSLLGMTLLKRYVLRLFLSLKYITANVVD
Sbjct: 56  MRTPTREIRRNPEEKSESEAKDAAGVTGILRKSLLGMTLLKRYVLRLFLSLKYITANVVD 115

Query: 61  RNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADI 120
           RNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADI
Sbjct: 116 RNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADI 175

Query: 121 KKEIEKKGFKNHTKIWAIVNSLKNNGVKLILDNNVDDDAAQSNYQ 166
           KKEIEKKGFKNHTKIWAIVNSLKNNGVKLILDNNVDD+AAQSNYQ
Sbjct: 176 KKEIEKKGFKNHTKIWAIVNSLKNNGVKLILDNNVDDNAAQSNYQ 220

[Close]
BLAST of CsGy4G002100 vs. TrEMBL
Match: tr|A0A1S4E442|A0A1S4E442_CUCME (uncharacterized protein LOC103501501 OS=Cucumis melo OX=3656 GN=LOC103501501 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 3.0e-60
Identity = 123/129 (95.35%), Postives = 127/129 (98.45%), Query Frame = 0 

Query: 37  MTLLKRYVLRLFLSLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVG 96
           MT+LKRYVLRLF+SLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVG
Sbjct: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVG 60

Query: 97  EVLAMRLKVDGLEQGQGRGIHADIKKEIEKKGFKNHTKIWAIVNSLKNNGVKLILDNNVD 156
           EVLAMRLKVDGLEQGQGRGIHADI KEIEKKGF+N TKIWAIVNSLKNNGVKLIL+NNVD
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIWAIVNSLKNNGVKLILNNNVD 120

Query: 157 DDAAQSNYQ 166
           DDAAQSNYQ
Sbjct: 121 DDAAQSNYQ 129

[Close]
BLAST of CsGy4G002100 vs. TrEMBL
Match: tr|A0A2N9ELK5|A0A2N9ELK5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7658 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 2.3e-52
Identity = 108/125 (86.40%), Postives = 119/125 (95.20%), Query Frame = 0 

Query: 37  MTLLKRYVLRLFLSLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVG 96
           MT+LKRYVLRLFLS+KYITANVVDRNNGR+VATASTVEHSIK SLECGRSCNAKAAA+VG
Sbjct: 1   MTVLKRYVLRLFLSIKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60

Query: 97  EVLAMRLKVDGLEQGQGRGIHADIKKEIEKKGFKNHTKIWAIVNSLKNNGVKLILDNNVD 156
           EVLAMRLKV+GLEQGQGRGIH D+ KE+EKKGFKN TKIWAIVN+LKNNGVKLILD+N D
Sbjct: 61  EVLAMRLKVEGLEQGQGRGIHVDVNKEVEKKGFKNRTKIWAIVNALKNNGVKLILDDN-D 120

Query: 157 DDAAQ 162
           D+ +Q
Sbjct: 121 DNTSQ 124

[Close]
BLAST of CsGy4G002100 vs. TrEMBL
Match: tr|V4SBX3|V4SBX3_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002842mg PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 3.9e-52
Identity = 106/126 (84.13%), Postives = 118/126 (93.65%), Query Frame = 0 

Query: 37  MTLLKRYVLRLFLSLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVG 96
           MT+LKRYVLRLF+SLKYITANVVDRNNGR+VATASTVEHSIKNSLECGRSCNAKAA++VG
Sbjct: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKNSLECGRSCNAKAASVVG 60

Query: 97  EVLAMRLKVDGLEQGQGRGIHADIKKEIEKKGFKNHTKIWAIVNSLKNNGVKLILDNNVD 156
           EVLAMRLKV+GLEQGQGRGIH D+ KE+EKKGFKN TKIWAIVN+LKNNGVKLIL +N D
Sbjct: 61  EVLAMRLKVEGLEQGQGRGIHVDVNKEVEKKGFKNRTKIWAIVNALKNNGVKLILQDNDD 120

Query: 157 DDAAQS 163
           + +  S
Sbjct: 121 NTSGPS 126

[Close]
BLAST of CsGy4G002100 vs. TrEMBL
Match: tr|A0A2H5QDY9|A0A2H5QDY9_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_221060 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 3.9e-52
Identity = 106/126 (84.13%), Postives = 118/126 (93.65%), Query Frame = 0 

Query: 37  MTLLKRYVLRLFLSLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVG 96
           MT+LKRYVLRLF+SLKYITANVVDRNNGR+VATASTVEHSIKNSLECGRSCNAKAA++VG
Sbjct: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKNSLECGRSCNAKAASVVG 60

Query: 97  EVLAMRLKVDGLEQGQGRGIHADIKKEIEKKGFKNHTKIWAIVNSLKNNGVKLILDNNVD 156
           EVLAMRLKV+GLEQGQGRGIH D+ KE+EKKGFKN TKIWAIVN+LKNNGVKLIL +N D
Sbjct: 61  EVLAMRLKVEGLEQGQGRGIHVDVNKEVEKKGFKNRTKIWAIVNALKNNGVKLILQDNDD 120

Query: 157 DDAAQS 163
           + +  S
Sbjct: 121 NTSGPS 126

The following BLAST results are available for this feature:
BLAST of CsGy4G002100 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN52952.13.2e-8299.39hypothetical protein Csa_4G007080 [Cucumis sativus][more]
XP_011653002.11.6e-6299.22PREDICTED: uncharacterized protein LOC101206481 [Cucumis sativus][more]
XP_016902998.14.5e-6095.35PREDICTED: uncharacterized protein LOC103501501 [Cucumis melo][more]
XP_022943852.15.7e-5588.37uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943853.1 unchar... [more]
XP_022985582.17.4e-5588.37uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985583.1 uncharac... [more]
BLAST of CsGy4G002100 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G45020.11.3e-5084.68Ribosomal L18p/L5e family protein[more]
AT5G27820.18.6e-0527.03Ribosomal L18p/L5e family protein[more]
BLAST of CsGy4G002100 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|B5YDV9|RL18_DICT69.7e-0632.5050S ribosomal protein L18 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM ... [more]
sp|Q5F5U3|RL18_NEIG19.7e-0631.6250S ribosomal protein L18 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090... [more]
sp|A9M3V0|RL18_NEIM09.7e-0631.6250S ribosomal protein L18 OS=Neisseria meningitidis serogroup C (strain 053442) ... [more]
sp|Q9JQQ6|RL18_NEIMA9.7e-0631.6250S ribosomal protein L18 OS=Neisseria meningitidis serogroup A / serotype 4A (s... [more]
sp|Q7DDT0|RL18_NEIMB9.7e-0631.6250S ribosomal protein L18 OS=Neisseria meningitidis serogroup B (strain MC58) OX... [more]
BLAST of CsGy4G002100 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KX15|A0A0A0KX15_CUCSA2.1e-8299.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G007080 PE=4 SV=1[more]
tr|A0A1S4E442|A0A1S4E442_CUCME3.0e-6095.35uncharacterized protein LOC103501501 OS=Cucumis melo OX=3656 GN=LOC103501501 PE=... [more]
tr|A0A2N9ELK5|A0A2N9ELK5_FAGSY2.3e-5286.40Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7658 PE=4 SV=1[more]
tr|V4SBX3|V4SBX3_9ROSI3.9e-5284.13Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002842mg PE=4 ... [more]
tr|A0A2H5QDY9|A0A2H5QDY9_CITUN3.9e-5284.13Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_221060 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR005484Ribosomal_L18
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G002100.1CsGy4G002100.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.30.420.100coord: 39..149
e-value: 4.5E-20
score: 73.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availablePANTHERPTHR12899:SF4SUBFAMILY NOT NAMEDcoord: 37..157
NoneNo IPR availableCDDcd00432Ribosomal_L18_L5ecoord: 41..147
e-value: 1.78524E-15
score: 67.1799
NoneNo IPR availableSUPERFAMILYSSF53137Translational machinery componentscoord: 38..147
IPR005484Ribosomal protein L18PFAMPF00861Ribosomal_L18pcoord: 31..148
e-value: 8.5E-10
score: 38.9
IPR005484Ribosomal protein L18PANTHERPTHR1289939S RIBOSOMAL PROTEIN L18, MITOCHONDRIALcoord: 37..157

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy4G002100Csa4G007080Cucumber (Chinese Long) v2cgybcuB165
CsGy4G002100CSPI04G02150Wild cucumber (PI 183967)cgybcpiB168
CsGy4G002100CsaV3_4G002110Cucumber (Chinese Long) v3cgybcucB171
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy4G002100Watermelon (97103) v1cgybwmB282
CsGy4G002100Silver-seed gourdcarcgybB0127
CsGy4G002100Watermelon (97103) v2cgybwmbB306
CsGy4G002100Wax gourdcgybwgoB353
CsGy4G002100Cucurbita maxima (Rimu)cgybcmaB485
CsGy4G002100Cucurbita maxima (Rimu)cgybcmaB560
CsGy4G002100Cucurbita moschata (Rifu)cgybcmoB455
CsGy4G002100Cucurbita pepo (Zucchini)cgybcpeB552
CsGy4G002100Cucurbita pepo (Zucchini)cgybcpeB575
CsGy4G002100Bottle gourd (USVL1VR-Ls)cgyblsiB285
CsGy4G002100Melon (DHL92) v3.5.1cgybmeB269
CsGy4G002100Melon (DHL92) v3.6.1cgybmedB266
CsGy4G002100Watermelon (Charleston Gray)cgybwcgB304