Csa4G007080 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G007080
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
Description50S ribosomal protein L18; contains IPR005484 (Ribosomal protein L18/L5)
LocationChr4 : 1222119 .. 1224874 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCTGCTTTGTACTTTGAAATATTTTTTTGGATAATAATTAAGTTGATTATTGTCTTTATGTTTGTGAACGTAACTATTGTATTGTCACTAGACTACCCGTGAATTTTTGTATTGATTCTCTAATACACTTTTGTACTTATCATAATTTGATACAATAATAAAATAAAATAAAAGAAGAAATATTTTTAAAAATAGTAAAATGAATTAAAATATTTATAAACTATAACAAAATTTTAGATTATGAAATTACAATTTTGGTATAGTAAATATTTTATAAATTCTTAAAAATTTCGCAAAAGTAAAAAAAATAGATAAAAATAAAAGACGGATTTCTACTTCTTTGTCTCTCTTCCTCTTCTTCCCTTTTCCTTCTTCTCCTCCACGGCGGCGTAGTGCTGTGTGGTGACGGCGAGATTAGCGACGATTTGTTGTTTCTACTTCTGCTTCTGCAAGCAATCGGCTGTCAGGTACGAAAATCATCCTCTTGTAATCGGTATCTATAAATTTCTCTCTCACTCAAACAACCCAGATCGTTCTTTCTCTCTTTCTTCTTTTCAATGCACTTTTTTTACAGGGTTTTTAGTTTGTTGTTGTTGAATACAGATGGGTTTTGATAAGTTGTGTTCATCTTTGCTTTCTATCATTTCTTGTTGTTCTGATTAATTTTAGGCTTATGCGAACAAGTAGAAAGAAAGAGACTGATAGGAGGGATTTGGGTTGGGTTTTTTTTATGTTTAATTTTTGTCAGATTGTCGATTTTTTACTCTTGTACTAAAAAAAATTCTAACTTTCACAATACGCGAGGTTTTAATGGGCAGGGATTTACTGTGGCTGTGAAAACTGGTTTGACAAAGGATTTGGGTGTTCATCCTATAGCGGCTGAAGAATTTGTCACCATGCGAACTCCTACAAGGGAGATTCGTAGAAATCCTGAGGTTTGTTGACAATTGTAAGCCTGTGCTGGTTGACCAATTTGCAATTTTTGATGCTTCGACTAATAAATAATGGATCATTGCCTTTTAACAATTTAGAATGCACAAATTGGCTCGGAAACTGATATCATATGGGTTACTATCTGTTAGGAGAAGTCAGAATCTGAGGCTAAAGATGCAGCAGGGGTATAAAACGGATGCAAGCTTAATCAATTTGTAATTCGAAAACTTTAGTCAGTCCTTTCAGGTATCCACTCTCTTGACCTACGTACCATTTATTGAGTTCTTTACAAGTGTGATGTAACTTTCATTGGATTTGTTTCCACTGCTCTGCTACTACAAAGTTTATTACTTTCAGAGCTAGAAATGTTGATGTCAAGTTTATTGATTAAGTGTTATTTGATCCAGAAGTTGAGAAAATACCATGAAACTATGATGATATACTTTTACGTCAGTGAACCTAAAATTGAAATGTCCATATATTTTCAAAGCCATGGAATCACTTTTTTGGTGTATCCACTTGAGATTATGTTGAAAATGGATAATTGAAAAACAAGCAATGCTGATATTAGTTAGATTCCATCTGAATGCCACTGGAAATCTGTAGATTACTCTACAAAGTTCATTCACAGAGAGTATAGCCATCAGAGAAGGATATGGTCAATGGAGAATAAGGGAATTTTTCTTTACTTTTTGGTGTCAAGGGATGGAAGTTTTAGGCTATTTGAAAGACGTGAATCCACAAACCTTAGTTTGTTACAATGTATTTGTTCTTAAGTGTTGTAATCTTCTTAGCTTTGAATGGGAAATAAAAAAAATACTATGTGTATATGCTTATCATCCAGCGTTTTGAGCCTGAACTATACATTTATTTTTTCTTCATACTAATCCACGAACGTTATTCTACCGCTTTTTGCTACTCTGCTAACTCATGGAACGTTTTAACATTTCAGATAGGTAACAGGGATTTTGAGAAAATCGCTGCTGGGAATGACGCTATTAAAGCGCTATGTATTGCGATTATTCTTATCTTTGAAGTACATAACAGCGAATGTGGTAGATAGAAACAATGGACGAGTCGTTGCAACTGCATCCACAGTGGAGCACTCCATAAAAAACTCACTTGAATGTGGCCGGTCTTGTAATGCTAAGGCAGCAGCAATTGTTGGAGAGGTGTTGGCTATGCGACTCAAAGTTGATGGTCTCGAACAGGGGCAAGGAAGAGGGATTCACGCAGACATAAAAAAAGAAATTGAGAAGAAAGGCTTCAAAAACCACACAAAAATCTGGGCTATAGTGAACTCACTAAAGAATAACGGAGTTAAACTCATTCTCGACAACAATGTTGACGACAATGCAGCTCAATCGAACTATCAATAAGCATCGAAAAGCGATCTTATTGTCCATCCCTAAGAAAAAAGTGGGTTAGGCTAGAGCTCAACCATCATGGAAGACTAGATGCTGCTAAAGTGGAAGGTACTATCTTTATTAAACATCAGTCACTCATGATATTTGGAAGTTTATGAAGCAGAGACAACTTTATATCTCCACTTATAAAATGCTGGCATGTTGATATAGTGATACCACAGCCCACTTGGGCTAATGATAATGTTATCACACTAAAATGGCCTTATATGATCATCAAACTCTACACTACTTTCTCCTCTTTCATCCCGGTTTTTACTTTGTTTTTTTTTTCTCCCTTTTACTGGTTTAAGAGTTGTATAGAGATTAGCTTTTGTTTTCTGGTTTAAGAGGCTGTCGTTTTCTTGCTCGTGCTGTTTGATATCACACTGTTGCGTGAAAGAATTGTAGAATA

mRNA sequence

ATGTCTCTGCTTTTGCTGTGTGGTGACGGCGAGATTAGCGACGATTTGTTGTTTCTACTTCTGCTTCTGCAAGCAATCGGCTGTCAGGGATTTACTGTGGCTGTGAAAACTGGTTTGACAAAGGATTTGGGTGTTCATCCTATAGCGGCTGAAGAATTTGTCACCATGCGAACTCCTACAAGGGAGATTCGTAGAAATCCTGAGGAGAAGTCAGAATCTGAGGCTAAAGATGCAGCAGGGGTAACAGGGATTTTGAGAAAATCGCTGCTGGGAATGACGCTATTAAAGCGCTATGTATTGCGATTATTCTTATCTTTGAAGTACATAACAGCGAATGTGGTAGATAGAAACAATGGACGAGTCGTTGCAACTGCATCCACAGTGGAGCACTCCATAAAAAACTCACTTGAATGTGGCCGGTCTTGTAATGCTAAGGCAGCAGCAATTGTTGGAGAGGTGTTGGCTATGCGACTCAAAGTTGATGGTCTCGAACAGGGGCAAGGAAGAGGGATTCACGCAGACATAAAAAAAGAAATTGAGAAGAAAGGCTTCAAAAACCACACAAAAATCTGGGCTATAGTGAACTCACTAAAGAATAACGGAGTTAAACTCATTCTCGACAACAATGTTGACGACAATGCAGCTCAATCGAACTATCAATAA

Coding sequence (CDS)

ATGTCTCTGCTTTTGCTGTGTGGTGACGGCGAGATTAGCGACGATTTGTTGTTTCTACTTCTGCTTCTGCAAGCAATCGGCTGTCAGGGATTTACTGTGGCTGTGAAAACTGGTTTGACAAAGGATTTGGGTGTTCATCCTATAGCGGCTGAAGAATTTGTCACCATGCGAACTCCTACAAGGGAGATTCGTAGAAATCCTGAGGAGAAGTCAGAATCTGAGGCTAAAGATGCAGCAGGGGTAACAGGGATTTTGAGAAAATCGCTGCTGGGAATGACGCTATTAAAGCGCTATGTATTGCGATTATTCTTATCTTTGAAGTACATAACAGCGAATGTGGTAGATAGAAACAATGGACGAGTCGTTGCAACTGCATCCACAGTGGAGCACTCCATAAAAAACTCACTTGAATGTGGCCGGTCTTGTAATGCTAAGGCAGCAGCAATTGTTGGAGAGGTGTTGGCTATGCGACTCAAAGTTGATGGTCTCGAACAGGGGCAAGGAAGAGGGATTCACGCAGACATAAAAAAAGAAATTGAGAAGAAAGGCTTCAAAAACCACACAAAAATCTGGGCTATAGTGAACTCACTAAAGAATAACGGAGTTAAACTCATTCTCGACAACAATGTTGACGACAATGCAGCTCAATCGAACTATCAATAA

Protein sequence

MSLLLLCGDGEISDDLLFLLLLLQAIGCQGFTVAVKTGLTKDLGVHPIAAEEFVTMRTPTREIRRNPEEKSESEAKDAAGVTGILRKSLLGMTLLKRYVLRLFLSLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADIKKEIEKKGFKNHTKIWAIVNSLKNNGVKLILDNNVDDNAAQSNYQ*
Homology
[Close]
BLAST of Csa4G007080 vs. Swiss-Prot
Match: GSHRP_TOBAC (Glutathione reductase, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GOR PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.2e-10
Identity = 35/59 (59.32%), Postives = 42/59 (71.19%), Query Frame = 1 

Query: 29  QGFTVAVKTGLTK-----DLGVHPIAAEEFVTMRTPTREIRRNPEE-KSESEAKDAAGV 82
           QGF +AVK GLTK      +G+HP +AEEFVTMRTPTR++R +P E K+E + K AAGV
Sbjct: 499 QGFAIAVKAGLTKADFDATVGIHPTSAEEFVTMRTPTRKVRSSPSEGKAEHDIKAAAGV 557

[Close]
BLAST of Csa4G007080 vs. Swiss-Prot
Match: GSHRP_ARATH (Glutathione reductase, chloroplastic OS=Arabidopsis thaliana GN=EMB2360 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-09
Identity = 37/59 (62.71%), Postives = 40/59 (67.80%), Query Frame = 1 

Query: 29  QGFTVAVKTGLTK-----DLGVHPIAAEEFVTMRTPTREIRRNPEE-KSESEAKDAAGV 82
           QGF VAVK GLTK      +GVHP AAEEFVTMR PTR+ R++  E K+  EAK AAGV
Sbjct: 507 QGFGVAVKAGLTKADFDATVGVHPTAAEEFVTMRAPTRKFRKDSSEGKASPEAKTAAGV 565

[Close]
BLAST of Csa4G007080 vs. Swiss-Prot
Match: GSHRP_PEA (Glutathione reductase, chloroplastic/mitochondrial OS=Pisum sativum GN=GR PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-09
Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 1 

Query: 29  QGFTVAVKTGLTK-----DLGVHPIAAEEFVTMRTPTREIRRN--PEEKSESEAKDAAG 81
           QGF V +K GLTK      +G+HP AAEEFVTMRTPTR++R+N   + KS+S+AK  AG
Sbjct: 493 QGFAVGIKAGLTKADFDATVGIHPTAAEEFVTMRTPTRKVRKNQASQGKSDSKAKAVAG 551

[Close]
BLAST of Csa4G007080 vs. Swiss-Prot
Match: GSHRP_SOYBN (Glutathione reductase, chloroplastic OS=Glycine max GN=GR PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.5e-09
Identity = 37/60 (61.67%), Postives = 42/60 (70.00%), Query Frame = 1 

Query: 29  QGFTVAVKTGLTK-----DLGVHPIAAEEFVTMRTPTREIRR--NPEEKSESEAKDAAGV 82
           QGF VA+K  LTK      +G+HP AAEEFVTMRTPTR+IR+  + E KS S+AK AAGV
Sbjct: 485 QGFAVALKARLTKADFDATVGIHPSAAEEFVTMRTPTRKIRKSESSEGKSGSQAKAAAGV 544

[Close]
BLAST of Csa4G007080 vs. Swiss-Prot
Match: RL18_NEIMF (50S ribosomal protein L18 OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / DSM 15464 / FAM18) GN=rplR PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.2e-07
Identity = 37/117 (31.62%), Postives = 60/117 (51.28%), Query Frame = 1 

Query: 86  RKSLLGMTLLKRYVLRLFLSLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAK 145
           RK+   +  LK   L +F S  +I A V+     +V+A AST+E  ++ SL+ G   N +
Sbjct: 12  RKTRARIADLKMVRLCVFRSNNHIYAQVISAEGDKVLAQASTLEAEVRGSLKSG--SNVE 71

Query: 146 AAAIVGEVLAMRLKVDGLEQGQGRGIHADIKKEIEKKGFKNHTKIWAIVNSLKNNGV 203
           AAAIVG+ +A + K  G+E           K   ++ GF+ H ++ A+  + + NG+
Sbjct: 72  AAAIVGKRIAEKAKAAGVE-----------KVAFDRSGFQYHGRVKALAEAARENGL 115

[Close]
BLAST of Csa4G007080 vs. TrEMBL
Match: A0A0A0KX15_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G007080 PE=4 SV=1)

HSP 1 Score: 429.5 bits (1103), Expect = 2.5e-117
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 1 

Query: 1   MSLLLLCGDGEISDDLLFLLLLLQAIGCQGFTVAVKTGLTKDLGVHPIAAEEFVTMRTPT 60
           MSLLLLCGDGEISDDLLFLLLLLQAIGCQGFTVAVKTGLTKDLGVHPIAAEEFVTMRTPT
Sbjct: 1   MSLLLLCGDGEISDDLLFLLLLLQAIGCQGFTVAVKTGLTKDLGVHPIAAEEFVTMRTPT 60

Query: 61  REIRRNPEEKSESEAKDAAGVTGILRKSLLGMTLLKRYVLRLFLSLKYITANVVDRNNGR 120
           REIRRNPEEKSESEAKDAAGVTGILRKSLLGMTLLKRYVLRLFLSLKYITANVVDRNNGR
Sbjct: 61  REIRRNPEEKSESEAKDAAGVTGILRKSLLGMTLLKRYVLRLFLSLKYITANVVDRNNGR 120

Query: 121 VVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADIKKEIE 180
           VVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADIKKEIE
Sbjct: 121 VVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADIKKEIE 180

Query: 181 KKGFKNHTKIWAIVNSLKNNGVKLILDNNVDDNAAQSNYQ 221
           KKGFKNHTKIWAIVNSLKNNGVKLILDNNVDDNAAQSNYQ
Sbjct: 181 KKGFKNHTKIWAIVNSLKNNGVKLILDNNVDDNAAQSNYQ 220

[Close]
BLAST of Csa4G007080 vs. TrEMBL
Match: V4SBX3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002842mg PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 8.8e-54
Identity = 106/126 (84.13%), Postives = 118/126 (93.65%), Query Frame = 1 

Query: 92  MTLLKRYVLRLFLSLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVG 151
           MT+LKRYVLRLF+SLKYITANVVDRNNGR+VATASTVEHSIKNSLECGRSCNAKAA++VG
Sbjct: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKNSLECGRSCNAKAASVVG 60

Query: 152 EVLAMRLKVDGLEQGQGRGIHADIKKEIEKKGFKNHTKIWAIVNSLKNNGVKLILDNNVD 211
           EVLAMRLKV+GLEQGQGRGIH D+ KE+EKKGFKN TKIWAIVN+LKNNGVKLIL +N D
Sbjct: 61  EVLAMRLKVEGLEQGQGRGIHVDVNKEVEKKGFKNRTKIWAIVNALKNNGVKLILQDNDD 120

Query: 212 DNAAQS 218
           + +  S
Sbjct: 121 NTSGPS 126

[Close]
BLAST of Csa4G007080 vs. TrEMBL
Match: A0A061H0A9_THECC (Ribosomal L18p/L5e family protein isoform 1 OS=Theobroma cacao GN=TCM_042139 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.5e-53
Identity = 103/128 (80.47%), Postives = 121/128 (94.53%), Query Frame = 1 

Query: 92  MTLLKRYVLRLFLSLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVG 151
           MT+LKRYVLRLF+SLKYITANVVDRNNGR+VAT+STVEH+IKNSLECGRSCNAKAA IVG
Sbjct: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATSSTVEHAIKNSLECGRSCNAKAATIVG 60

Query: 152 EVLAMRLKVDGLEQGQGRGIHADIKKEIEKKGFKNHTKIWAIVNSLKNNGVKLILDNNVD 211
           EVLAMRLKV+GLEQGQGRGIH D+ KE+EKKGFKN TK+WA+VN+LKNNGVK++L++N +
Sbjct: 61  EVLAMRLKVEGLEQGQGRGIHVDVNKEVEKKGFKNRTKVWAVVNALKNNGVKVVLEDN-E 120

Query: 212 DNAAQSNY 220
           DN +Q +Y
Sbjct: 121 DNPSQPSY 127

[Close]
BLAST of Csa4G007080 vs. TrEMBL
Match: W9SH37_9ROSA (50S ribosomal protein L18 OS=Morus notabilis GN=L484_020603 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 3.3e-53
Identity = 106/128 (82.81%), Postives = 120/128 (93.75%), Query Frame = 1 

Query: 92  MTLLKRYVLRLFLSLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVG 151
           MT+LKRYVLRLF+SLKYITANVVDRNNGR+VATASTVEHSIKNSLECGRSCNAKAA +VG
Sbjct: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKNSLECGRSCNAKAATVVG 60

Query: 152 EVLAMRLKVDGLEQGQGRGIHADIKKEIEKKGFKNHTKIWAIVNSLKNNGVKLILDNNVD 211
           EVLAMRL+V+GLEQGQGRGIH D+ KEIEKKGFKN TKIWAIVNSLKNNGVKL+L++N D
Sbjct: 61  EVLAMRLRVEGLEQGQGRGIHVDVDKEIEKKGFKNRTKIWAIVNSLKNNGVKLVLEDN-D 120

Query: 212 DNAAQSNY 220
            N ++ ++
Sbjct: 121 KNPSRPSF 127

[Close]
BLAST of Csa4G007080 vs. TrEMBL
Match: A0A0B0NQ41_GOSAR (50S ribosomal L18 OS=Gossypium arboreum GN=F383_06924 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 2.8e-52
Identity = 100/126 (79.37%), Postives = 118/126 (93.65%), Query Frame = 1 

Query: 92  MTLLKRYVLRLFLSLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVG 151
           MT+LKRYVLRLF+SLKYITANVVDRNNGR+VATASTVEHSIKNSLECGRSCNAKAA ++G
Sbjct: 12  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKNSLECGRSCNAKAATVIG 71

Query: 152 EVLAMRLKVDGLEQGQGRGIHADIKKEIEKKGFKNHTKIWAIVNSLKNNGVKLILDNNVD 211
           EVLAMRLKV+GLEQGQGRGIH D+ KE+EKKGFKN TK+WA+VN+LKN+GVK++L++N D
Sbjct: 72  EVLAMRLKVEGLEQGQGRGIHVDVNKEVEKKGFKNRTKVWAVVNALKNHGVKVVLEDNED 131

Query: 212 DNAAQS 218
           + +  S
Sbjct: 132 NPSRPS 137

[Close]
BLAST of Csa4G007080 vs. TAIR10
Match: AT3G45020.1 (AT3G45020.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 211.8 bits (538), Expect = 4.2e-55
Identity = 100/122 (81.97%), Postives = 115/122 (94.26%), Query Frame = 1 

Query: 92  MTLLKRYVLRLFLSLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVG 151
           MT+LKRYVLRLF+S+KYITANVVDRNNGR+V TASTVEH+IKNSLECGR+CNAKAAAIVG
Sbjct: 1   MTVLKRYVLRLFMSIKYITANVVDRNNGRIVTTASTVEHTIKNSLECGRTCNAKAAAIVG 60

Query: 152 EVLAMRLKVDGLEQGQGRGIHADIKKEIEKKGFKNHTKIWAIVNSLKNNGVKLILDNNVD 211
           EVLAMRLKV+GL+ GQGRGIHAD+KKEIEKKGFK+ TK+WA++NSL+NNGV LILD++ D
Sbjct: 61  EVLAMRLKVEGLQDGQGRGIHADVKKEIEKKGFKSRTKVWAVINSLRNNGVTLILDDDDD 120

Query: 212 DN 214
           D+
Sbjct: 121 DD 122

[Close]
BLAST of Csa4G007080 vs. TAIR10
Match: AT3G54660.1 (AT3G54660.1 glutathione reductase)

HSP 1 Score: 65.1 bits (157), Expect = 6.3e-11
Identity = 37/59 (62.71%), Postives = 40/59 (67.80%), Query Frame = 1 

Query: 29  QGFTVAVKTGLTK-----DLGVHPIAAEEFVTMRTPTREIRRNPEE-KSESEAKDAAGV 82
           QGF VAVK GLTK      +GVHP AAEEFVTMR PTR+ R++  E K+  EAK AAGV
Sbjct: 507 QGFGVAVKAGLTKADFDATVGVHPTAAEEFVTMRAPTRKFRKDSSEGKASPEAKTAAGV 565

[Close]
BLAST of Csa4G007080 vs. NCBI nr
Match: gi|700197794|gb|KGN52952.1| (hypothetical protein Csa_4G007080 [Cucumis sativus])

HSP 1 Score: 429.5 bits (1103), Expect = 3.6e-117
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 1 

Query: 1   MSLLLLCGDGEISDDLLFLLLLLQAIGCQGFTVAVKTGLTKDLGVHPIAAEEFVTMRTPT 60
           MSLLLLCGDGEISDDLLFLLLLLQAIGCQGFTVAVKTGLTKDLGVHPIAAEEFVTMRTPT
Sbjct: 1   MSLLLLCGDGEISDDLLFLLLLLQAIGCQGFTVAVKTGLTKDLGVHPIAAEEFVTMRTPT 60

Query: 61  REIRRNPEEKSESEAKDAAGVTGILRKSLLGMTLLKRYVLRLFLSLKYITANVVDRNNGR 120
           REIRRNPEEKSESEAKDAAGVTGILRKSLLGMTLLKRYVLRLFLSLKYITANVVDRNNGR
Sbjct: 61  REIRRNPEEKSESEAKDAAGVTGILRKSLLGMTLLKRYVLRLFLSLKYITANVVDRNNGR 120

Query: 121 VVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADIKKEIE 180
           VVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADIKKEIE
Sbjct: 121 VVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADIKKEIE 180

Query: 181 KKGFKNHTKIWAIVNSLKNNGVKLILDNNVDDNAAQSNYQ 221
           KKGFKNHTKIWAIVNSLKNNGVKLILDNNVDDNAAQSNYQ
Sbjct: 181 KKGFKNHTKIWAIVNSLKNNGVKLILDNNVDDNAAQSNYQ 220

[Close]
BLAST of Csa4G007080 vs. NCBI nr
Match: gi|778689708|ref|XP_011653002.1| (PREDICTED: uncharacterized protein LOC101206481 [Cucumis sativus])

HSP 1 Score: 255.4 bits (651), Expect = 9.3e-65
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1 

Query: 92  MTLLKRYVLRLFLSLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVG 151
           MTLLKRYVLRLFLSLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVG
Sbjct: 1   MTLLKRYVLRLFLSLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVG 60

Query: 152 EVLAMRLKVDGLEQGQGRGIHADIKKEIEKKGFKNHTKIWAIVNSLKNNGVKLILDNNVD 211
           EVLAMRLKVDGLEQGQGRGIHADIKKEIEKKGFKNHTKIWAIVNSLKNNGVKLILDNNVD
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHADIKKEIEKKGFKNHTKIWAIVNSLKNNGVKLILDNNVD 120

Query: 212 DNAAQSNYQ 221
           DNAAQSNYQ
Sbjct: 121 DNAAQSNYQ 129

[Close]
BLAST of Csa4G007080 vs. NCBI nr
Match: gi|659126690|ref|XP_008463315.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo])

HSP 1 Score: 243.4 bits (620), Expect = 3.6e-61
Identity = 122/129 (94.57%), Postives = 127/129 (98.45%), Query Frame = 1 

Query: 92  MTLLKRYVLRLFLSLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVG 151
           MT+LKRYVLRLF+SLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVG
Sbjct: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVG 60

Query: 152 EVLAMRLKVDGLEQGQGRGIHADIKKEIEKKGFKNHTKIWAIVNSLKNNGVKLILDNNVD 211
           EVLAMRLKVDGLEQGQGRGIHADI KEIEKKGF+N TKIWAIVNSLKNNGVKLIL+NNVD
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIWAIVNSLKNNGVKLILNNNVD 120

Query: 212 DNAAQSNYQ 221
           D+AAQSNYQ
Sbjct: 121 DDAAQSNYQ 129

[Close]
BLAST of Csa4G007080 vs. NCBI nr
Match: gi|567878549|ref|XP_006431833.1| (hypothetical protein CICLE_v10002842mg [Citrus clementina])

HSP 1 Score: 218.4 bits (555), Expect = 1.3e-53
Identity = 106/126 (84.13%), Postives = 118/126 (93.65%), Query Frame = 1 

Query: 92  MTLLKRYVLRLFLSLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVG 151
           MT+LKRYVLRLF+SLKYITANVVDRNNGR+VATASTVEHSIKNSLECGRSCNAKAA++VG
Sbjct: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKNSLECGRSCNAKAASVVG 60

Query: 152 EVLAMRLKVDGLEQGQGRGIHADIKKEIEKKGFKNHTKIWAIVNSLKNNGVKLILDNNVD 211
           EVLAMRLKV+GLEQGQGRGIH D+ KE+EKKGFKN TKIWAIVN+LKNNGVKLIL +N D
Sbjct: 61  EVLAMRLKVEGLEQGQGRGIHVDVNKEVEKKGFKNRTKIWAIVNALKNNGVKLILQDNDD 120

Query: 212 DNAAQS 218
           + +  S
Sbjct: 121 NTSGPS 126

[Close]
BLAST of Csa4G007080 vs. NCBI nr
Match: gi|1009116018|ref|XP_015874550.1| (PREDICTED: uncharacterized protein LOC107411474 [Ziziphus jujuba])

HSP 1 Score: 217.6 bits (553), Expect = 2.1e-53
Identity = 107/128 (83.59%), Postives = 121/128 (94.53%), Query Frame = 1 

Query: 92  MTLLKRYVLRLFLSLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVG 151
           MT+LKRYVLRLF+SLKYITANVVDRNNGR VAT+STVEHSIK SLECGRSCNAKAA++VG
Sbjct: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRNVATSSTVEHSIKGSLECGRSCNAKAASVVG 60

Query: 152 EVLAMRLKVDGLEQGQGRGIHADIKKEIEKKGFKNHTKIWAIVNSLKNNGVKLILDNNVD 211
           EVLAMRLKV+GLEQGQGRGIH D+ KE+EKKGFKN TKIWAIVNSLKNNGVKLILD+N D
Sbjct: 61  EVLAMRLKVEGLEQGQGRGIHVDVNKEVEKKGFKNRTKIWAIVNSLKNNGVKLILDDN-D 120

Query: 212 DNAAQSNY 220
           +N+++ +Y
Sbjct: 121 ENSSRPSY 127

The following BLAST results are available for this feature:
BLAST of Csa4G007080 vs. Swiss-Prot
Match NameE-valueIdentityDescription
GSHRP_TOBAC2.2e-1059.32Glutathione reductase, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GOR PE=1... [more]
GSHRP_ARATH1.1e-0962.71Glutathione reductase, chloroplastic OS=Arabidopsis thaliana GN=EMB2360 PE=2 SV=... [more]
GSHRP_PEA1.1e-0957.63Glutathione reductase, chloroplastic/mitochondrial OS=Pisum sativum GN=GR PE=2 S... [more]
GSHRP_SOYBN2.5e-0961.67Glutathione reductase, chloroplastic OS=Glycine max GN=GR PE=2 SV=1[more]
RL18_NEIMF5.2e-0731.6250S ribosomal protein L18 OS=Neisseria meningitidis serogroup C / serotype 2a (s... [more]
BLAST of Csa4G007080 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KX15_CUCSA2.5e-117100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G007080 PE=4 SV=1[more]
V4SBX3_9ROSI8.8e-5484.13Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002842mg PE=4 SV=1[more]
A0A061H0A9_THECC2.5e-5380.47Ribosomal L18p/L5e family protein isoform 1 OS=Theobroma cacao GN=TCM_042139 PE=... [more]
W9SH37_9ROSA3.3e-5382.8150S ribosomal protein L18 OS=Morus notabilis GN=L484_020603 PE=4 SV=1[more]
A0A0B0NQ41_GOSAR2.8e-5279.3750S ribosomal L18 OS=Gossypium arboreum GN=F383_06924 PE=4 SV=1[more]
BLAST of Csa4G007080 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G45020.14.2e-5581.97 Ribosomal L18p/L5e family protein[more]
AT3G54660.16.3e-1162.71 glutathione reductase[more]
BLAST of Csa4G007080 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197794|gb|KGN52952.1|3.6e-117100.00hypothetical protein Csa_4G007080 [Cucumis sativus][more]
gi|778689708|ref|XP_011653002.1|9.3e-65100.00PREDICTED: uncharacterized protein LOC101206481 [Cucumis sativus][more]
gi|659126690|ref|XP_008463315.1|3.6e-6194.57PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo][more]
gi|567878549|ref|XP_006431833.1|1.3e-5384.13hypothetical protein CICLE_v10002842mg [Citrus clementina][more]
gi|1009116018|ref|XP_015874550.1|2.1e-5383.59PREDICTED: uncharacterized protein LOC107411474 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005484Ribosomal_L18
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU091019cucumber EST collection version 3.0transcribed_cluster
CU102187cucumber EST collection version 3.0transcribed_cluster
CU114840cucumber EST collection version 3.0transcribed_cluster
CU132882cucumber EST collection version 3.0transcribed_cluster
CU149497cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G007080.1Csa4G007080.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU114840CU114840transcribed_cluster
CU102187CU102187transcribed_cluster
CU149497CU149497transcribed_cluster
CU091019CU091019transcribed_cluster
CU132882CU132882transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005484Ribosomal protein L18PFAMPF00861Ribosomal_L18pcoord: 86..203
score: 1.
NoneNo IPR availableGENE3DG3DSA:3.30.420.100coord: 96..204
score: 6.4
NoneNo IPR availablePANTHERPTHR1289939S RIBOSOMAL PROTEIN L18, MITOCHONDRIALcoord: 48..220
score: 7.0
NoneNo IPR availablePANTHERPTHR12899:SF4SUBFAMILY NOT NAMEDcoord: 48..220
score: 7.0
NoneNo IPR availableunknownSSF53137Translational machinery componentscoord: 93..202
score: 9.94

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G007080CSPI04G02150Wild cucumber (PI 183967)cpicuB182
Csa4G007080CsGy4G002100Cucumber (Gy14) v2cgybcuB165
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G007080Melon (DHL92) v3.5.1cumeB312
Csa4G007080Watermelon (Charleston Gray)cuwcgB326
Csa4G007080Watermelon (97103) v1cuwmB304
Csa4G007080Cucurbita pepo (Zucchini)cpecuB615
Csa4G007080Bottle gourd (USVL1VR-Ls)culsiB312
Csa4G007080Melon (DHL92) v3.6.1cumedB297
Csa4G007080Silver-seed gourdcarcuB0128
Csa4G007080Watermelon (97103) v2cuwmbB323
Csa4G007080Wax gourdcuwgoB366
Csa4G007080Cucumber (Gy14) v1cgycuB102
Csa4G007080Cucurbita maxima (Rimu)cmacuB260
Csa4G007080Cucurbita moschata (Rifu)cmocuB245