CsGy4G001560 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G001560
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	BAG family molecular chaperone regulator 6-like
Location	Chr4 : 932761 .. 933085 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTTGCTGTTTAGGTTGGAATATTCGGTGAAAGGCGTGGACTCTGGAATTAGGAATTTCAGGAAAGCGGTGATTAAGAAGGCTATTGCATTAGAGGAGAAGATCGATTCAATTGCTGCTGCGAATGAAGCTACTAATGTGATTGATAACTCTCGAACCCGTGACTGGAGTAGAAGCTGTTGATCCGAGTTCGGAAGGAACTCTGGATCTCAAGGTTATAATTCCAGAGCACTTGGAGGATAATTCTACTGCTGATAACGCTAATCGCGAATCTGCTGATGATTGTGATGGTGGGAATGCCGATATGGAGTTTCTAAGTTGA

mRNA sequence

ATGAATTTGCTGTTTAGGTTGGAATATTCGGTGAAAGGCGTGGACTCTGGAATTAGGAATTTCAGGAAAGCGGTGATTAAGAAGGCTATTGCATTAGAGGAGAAGATCGATTCAATTGCTGCTGCGAATGAAGCTACTAATGTGATTGATAACTCTCGAACCCGTGACTGGAAAGCTGTTGATCCGAGTTCGGAAGGAACTCTGGATCTCAAGGTTATAATTCCAGAGCACTTGGAGGATAATTCTACTGCTGATAACGCTAATCGCGAATCTGCTGATGATTGTGATGGTGGGAATGCCGATATGGAGTTTCTAAGTTGA

Coding sequence (CDS)

ATGAATTTGCTGTTTAGGTTGGAATATTCGGTGAAAGGCGTGGACTCTGGAATTAGGAATTTCAGGAAAGCGGTGATTAAGAAGGCTATTGCATTAGAGGAGAAGATCGATTCAATTGCTGCTGCGAATGAAGCTACTAATGTGATTGATAACTCTCGAACCCGTGACTGGAAAGCTGTTGATCCGAGTTCGGAAGGAACTCTGGATCTCAAGGTTATAATTCCAGAGCACTTGGAGGATAATTCTACTGCTGATAACGCTAATCGCGAATCTGCTGATGATTGTGATGGTGGGAATGCCGATATGGAGTTTCTAAGTTGA

Protein sequence

MNLLFRLEYSVKGVDSGIRNFRKAVIKKAIALEEKIDSIAAANEATNVIDNSRTRDWKAVDPSSEGTLDLKVIIPEHLEDNSTADNANRESADDCDGGNADMEFLS

Homology

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BLAST of CsGy4G001560 vs. NCBI nr
Match: XP_016901547.1 (PREDICTED: BAG family molecular chaperone regulator 6-like [Cucumis melo])

HSP 1 Score: 140.6 bits (353), Expect = 3.1e-30
Identity = 81/106 (76.42%), Postives = 88/106 (83.02%), Query Frame = 0


Query: 1   MNLLFRLEYSVKGVDSGIRNFRKAVIKKAIALEEKIDSIAAANEATNVIDN-----SRTR 60
           MNLLFRL+ SVKGVDSGIR+FRKAVIKKAIAL+EKIDSIAAANEATNVID      +   
Sbjct: 116 MNLLFRLD-SVKGVDSGIRSFRKAVIKKAIALQEKIDSIAAANEATNVIDETLEPVTAEC 175

Query: 61  DWKAVDPSSEGTLDLKVIIPEHLEDNSTADNANRESADDCDGGNAD 102
             + VDPSSEGTL+LKVIIPEH +DNSTA N N ESADDCDG NAD
Sbjct: 176 GCEGVDPSSEGTLNLKVIIPEHEDDNSTAGNGNCESADDCDGENAD 220

[Close]

BLAST of CsGy4G001560 vs. NCBI nr
Match: KGN52904.1 (hypothetical protein Csa_4G006110 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 1.5e-21
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1  MNLLFRLEYSVKGVDSGIRNFRKAVIKKAIALEEKIDSIAAANEATNVIDNSRTRDW 58
          MNLLFRLEYSVKGVDSGIRNFRKAVIKKAIALEEKIDSIAAANEATNVIDNSRTRDW
Sbjct: 1  MNLLFRLEYSVKGVDSGIRNFRKAVIKKAIALEEKIDSIAAANEATNVIDNSRTRDW 57

[Close]

BLAST of CsGy4G001560 vs. NCBI nr
Match: XP_023526797.1 (BAG family molecular chaperone regulator 6-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 91.7 bits (226), Expect = 1.7e-15
Identity = 63/120 (52.50%), Postives = 77/120 (64.17%), Query Frame = 0


Query: 1   MNLLFRLEYSVKGVDSGIRNFRKAVIKKAIALEEKIDSIAAANEATNVIDNSRTR----- 60
           M+LLFRL+ SVKGVD GIRNFRKAVIKKAIAL+EK+DSIAA +EAT+V+  +        
Sbjct: 114 MSLLFRLD-SVKGVDIGIRNFRKAVIKKAIALQEKVDSIAAVDEATHVVHETLDAATAKC 173

Query: 61  DWKAVDPSS------------EGTLDLKVIIPEHLEDNSTADNANRESADDCDGGNADME 104
           D +AVD SS            E T DLK  IPE  +++ TA  AN E  D CD   A++E
Sbjct: 174 DSEAVDRSSGMDISGAREISAEETPDLKDRIPELEDESCTAKMANSEPVDGCDDDRAEIE 232

[Close]

BLAST of CsGy4G001560 vs. NCBI nr
Match: XP_023526798.1 (BAG family molecular chaperone regulator 6-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 91.7 bits (226), Expect = 1.7e-15
Identity = 63/120 (52.50%), Postives = 77/120 (64.17%), Query Frame = 0


Query: 1   MNLLFRLEYSVKGVDSGIRNFRKAVIKKAIALEEKIDSIAAANEATNVIDNSRTR----- 60
           M+LLFRL+ SVKGVD GIRNFRKAVIKKAIAL+EK+DSIAA +EAT+V+  +        
Sbjct: 92  MSLLFRLD-SVKGVDIGIRNFRKAVIKKAIALQEKVDSIAAVDEATHVVHETLDAATAKC 151

Query: 61  DWKAVDPSS------------EGTLDLKVIIPEHLEDNSTADNANRESADDCDGGNADME 104
           D +AVD SS            E T DLK  IPE  +++ TA  AN E  D CD   A++E
Sbjct: 152 DSEAVDRSSGMDISGAREISAEETPDLKDRIPELEDESCTAKMANSEPVDGCDDDRAEIE 210

[Close]

BLAST of CsGy4G001560 vs. NCBI nr
Match: XP_022955635.1 (BAG family molecular chaperone regulator 6-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 89.0 bits (219), Expect = 1.1e-14
Identity = 61/120 (50.83%), Postives = 76/120 (63.33%), Query Frame = 0


Query: 1   MNLLFRLEYSVKGVDSGIRNFRKAVIKKAIALEEKIDSIAAANEATNVIDNSRTR----- 60
           M+LLFRL+ SVKGVD GIRNFRKAVIKKAIAL+EK+DSIAA +EAT+V+  +        
Sbjct: 114 MSLLFRLD-SVKGVDFGIRNFRKAVIKKAIALQEKVDSIAAVDEATDVVHETLEAATAKC 173

Query: 61  DWKAVDPSS------------EGTLDLKVIIPEHLEDNSTADNANRESADDCDGGNADME 104
           D +AVD SS            + T DLK  IPE  +++ TA  AN E  D CD    ++E
Sbjct: 174 DSEAVDRSSGMDISGAREIVAKETQDLKDRIPELEDESCTAKMANSEPVDGCDDDRTEIE 232

[Close]

BLAST of CsGy4G001560 vs. TrEMBL
Match: tr|A0A1S4DZX6|A0A1S4DZX6_CUCME (BAG family molecular chaperone regulator 6-like OS=Cucumis melo OX=3656 GN=LOC103494572 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.1e-30
Identity = 81/106 (76.42%), Postives = 88/106 (83.02%), Query Frame = 0


Query: 1   MNLLFRLEYSVKGVDSGIRNFRKAVIKKAIALEEKIDSIAAANEATNVIDN-----SRTR 60
           MNLLFRL+ SVKGVDSGIR+FRKAVIKKAIAL+EKIDSIAAANEATNVID      +   
Sbjct: 116 MNLLFRLD-SVKGVDSGIRSFRKAVIKKAIALQEKIDSIAAANEATNVIDETLEPVTAEC 175

Query: 61  DWKAVDPSSEGTLDLKVIIPEHLEDNSTADNANRESADDCDGGNAD 102
             + VDPSSEGTL+LKVIIPEH +DNSTA N N ESADDCDG NAD
Sbjct: 176 GCEGVDPSSEGTLNLKVIIPEHEDDNSTAGNGNCESADDCDGENAD 220

[Close]

BLAST of CsGy4G001560 vs. TrEMBL
Match: tr|A0A0A0KVI0|A0A0A0KVI0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G006110 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.0e-21
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1  MNLLFRLEYSVKGVDSGIRNFRKAVIKKAIALEEKIDSIAAANEATNVIDNSRTRDW 58
          MNLLFRLEYSVKGVDSGIRNFRKAVIKKAIALEEKIDSIAAANEATNVIDNSRTRDW
Sbjct: 1  MNLLFRLEYSVKGVDSGIRNFRKAVIKKAIALEEKIDSIAAANEATNVIDNSRTRDW 57

[Close]

BLAST of CsGy4G001560 vs. TrEMBL
Match: tr|A0A0A0KTW1|A0A0A0KTW1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G011820 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 7.8e-14
Identity = 56/101 (55.45%), Postives = 67/101 (66.34%), Query Frame = 0


Query: 1   MNLLFRLEYSVKGVDSGIRNFRKAVIKKAIALEEKIDSIAAANEATNVIDNSRTRDWKAV 60
           MNLLFRL+ SVKGVDSGIRN RKAVIKKAIAL+EKIDSIAAAN ATNVI       ++ +
Sbjct: 116 MNLLFRLD-SVKGVDSGIRNLRKAVIKKAIALQEKIDSIAAANGATNVI-------YETL 175

Query: 61  DPSSEGTLDLKVIIPEHLEDNSTADNANRESADDCDGGNAD 102
           +P               +     ++  +RESAD+CDG NAD
Sbjct: 176 EP---------------VTAKCDSEAVDRESADECDGENAD 193

[Close]

BLAST of CsGy4G001560 vs. TrEMBL
Match: tr|W9QTU5|W9QTU5_9ROSA (BAG family molecular chaperone regulator 5 OS=Morus notabilis OX=981085 GN=L484_017479 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.8e-08
Identity = 37/65 (56.92%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 1   MNLLFRLEYSVKGVDSGIRNFRKAVIKKAIALEEKIDSIAAANEATNVIDNSRTRDWKAV 60
           MNLL RL+ SV+GVDSG+R+FRKAVIKKAIAL+E+ID+I A ++AT+ + N  +   K+ 
Sbjct: 116 MNLLLRLD-SVRGVDSGVRDFRKAVIKKAIALQERIDAIVAGDQATSDVANEESIS-KSA 175

Query: 61  DPSSE 66
           D ++E
Sbjct: 176 DQAAE 178

[Close]

BLAST of CsGy4G001560 vs. TrEMBL
Match: tr|A0A1U8AD77|A0A1U8AD77_NELNU (uncharacterized protein LOC104601691 OS=Nelumbo nucifera OX=4432 GN=LOC104601691 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 9.3e-07
Identity = 32/50 (64.00%), Postives = 42/50 (84.00%), Query Frame = 0


Query: 1   MNLLFRLEYSVKGVDSGIRNFRKAVIKKAIALEEKIDSIAAANEATNVID 51
           M+LLFRL+ SV+GVDSG+R  RK VIKKAIAL+EK+D+I A ++A  V+D
Sbjct: 112 MSLLFRLD-SVRGVDSGVRECRKKVIKKAIALQEKMDAIVAGDQAATVVD 160

The following BLAST results are available for this feature:

BLAST of CsGy4G001560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016901547.1	3.1e-30	76.42	PREDICTED: BAG family molecular chaperone regulator 6-like [Cucumis melo]	[more]
KGN52904.1	1.5e-21	100.00	hypothetical protein Csa_4G006110 [Cucumis sativus]	[more]
XP_023526797.1	1.7e-15	52.50	BAG family molecular chaperone regulator 6-like isoform X1 [Cucurbita pepo subsp...	[more]
XP_023526798.1	1.7e-15	52.50	BAG family molecular chaperone regulator 6-like isoform X2 [Cucurbita pepo subsp...	[more]
XP_022955635.1	1.1e-14	50.83	BAG family molecular chaperone regulator 6-like isoform X1 [Cucurbita moschata]	[more]

BLAST of CsGy4G001560 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy4G001560 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy4G001560 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DZX6\|A0A1S4DZX6_CUCME	2.1e-30	76.42	BAG family molecular chaperone regulator 6-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0KVI0\|A0A0A0KVI0_CUCSA	1.0e-21	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G006110 PE=4 SV=1	[more]
tr\|A0A0A0KTW1\|A0A0A0KTW1_CUCSA	7.8e-14	55.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G011820 PE=4 SV=1	[more]
tr\|W9QTU5\|W9QTU5_9ROSA	3.8e-08	56.92	BAG family molecular chaperone regulator 5 OS=Morus notabilis OX=981085 GN=L484_...	[more]
tr\|A0A1U8AD77\|A0A1U8AD77_NELNU	9.3e-07	64.00	uncharacterized protein LOC104601691 OS=Nelumbo nucifera OX=4432 GN=LOC104601691...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0051087	chaperone binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G001560.1	CsGy4G001560.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..96
None	No IPR available	PANTHER	PTHR33322	FAMILY NOT NAMED	coord: 1..56
None	No IPR available	PANTHER	PTHR33322:SF6	SUBFAMILY NOT NAMED	coord: 1..56

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G001560	Csa4G006110	Cucumber (Chinese Long) v2	cgybcuB165
CsGy4G001560	CSPI04G01670	Wild cucumber (PI 183967)	cgybcpiB168
CsGy4G001560	CsaV3_4G001660	Cucumber (Chinese Long) v3	cgybcucB171

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G001560	Cucurbita maxima (Rimu)	cgybcmaB485
CsGy4G001560	Cucurbita maxima (Rimu)	cgybcmaB502
CsGy4G001560	Cucurbita maxima (Rimu)	cgybcmaB506
CsGy4G001560	Cucurbita moschata (Rifu)	cgybcmoB455
CsGy4G001560	Cucurbita moschata (Rifu)	cgybcmoB478
CsGy4G001560	Cucurbita pepo (Zucchini)	cgybcpeB549
CsGy4G001560	Cucurbita pepo (Zucchini)	cgybcpeB552
CsGy4G001560	Bottle gourd (USVL1VR-Ls)	cgyblsiB275
CsGy4G001560	Bottle gourd (USVL1VR-Ls)	cgyblsiB285
CsGy4G001560	Melon (DHL92) v3.5.1	cgybmeB269
CsGy4G001560	Melon (DHL92) v3.6.1	cgybmedB266
CsGy4G001560	Watermelon (Charleston Gray)	cgybwcgB249
CsGy4G001560	Watermelon (Charleston Gray)	cgybwcgB304
CsGy4G001560	Watermelon (97103) v1	cgybwmB267
CsGy4G001560	Watermelon (97103) v1	cgybwmB282
CsGy4G001560	Watermelon (97103) v1	cgybwmB332
CsGy4G001560	Silver-seed gourd	carcgybB0127
CsGy4G001560	Silver-seed gourd	carcgybB0215
CsGy4G001560	Cucumber (Chinese Long) v3	cgybcucB166
CsGy4G001560	Watermelon (97103) v2	cgybwmbB306
CsGy4G001560	Wax gourd	cgybwgoB362