CsGy3G041080 (gene) Cucumber (Gy14) v2

Overview
NameCsGy3G041080
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr3 : 38447461 .. 38448186 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTTGCAAAAGATTTAGAAAAATGTGGTGAAAAGCAATTCAAATTACAACTTGTTAATTCATTCAGATTAGACGCCTATTCCTCGATACTTAAACGCCCTTCCTCTCTTTCCCGCCCTTTTGTAAGAGCAGAGTTTTTCTCTTTGTGGATCTCAAAGGATGGTAGGGATCAGGAGGTAGCTCAGCAGTTTCACGTCATCAAGCTTATGGATTATCATCAATGGGAACCTCAAGATTCTCATCCCAAACGTGAAAGGTAAATCTTATGTAATGTCATTTAATACTGCAAGGCTCACATCGTGTTCGCGAATTTGATCCTTCTGAAATTCTTGTTAGTTGTTCATTTTTCTTCTCTAAATTTCGAAGTATGAATTGCAAGAAAGTGTTGTTTCAGTTTTTCCTAATTGGTTTCGACTGCTTTAGAATTTCTTCATTGGGCAGAACGGTACAAATATTAGGACAATGAACCTAGAAATTAGTGGTTTAATGGAAGAGGATAGAATATAAGTGAACACGGGAATAGATTCTTCAAAATCATTAGATTACTCGATCATTTTTAATCTAATCGTGTATATAGAGGATTATTTATGAACGGAATTAGAGTATTAGGGGCTGATATTTATGATATTAGAGGGATTTCCATTGCCAATGGAGAAAAAGTTCGGAGGATGCCGTCACTATTTTGATATCGAGAATGGTTTTTGTTCAGTGCAAGGAGATAA

mRNA sequence

ATGAAGTTTGCAAAAGATTTAGAAAAATGTGGTGAAAAGCAATTCAAATTACAACTTGTTAATTCATTCAGATTAGACGCCTATTCCTCGATACTTAAACGCCCTTCCTCTCTTTCCCGCCCTTTTGTAAGAGCAGAGTTTTTCTCTTTGTGGATCTCAAAGGATGGTAGGGATCAGGAGGTAGCTCAGCAGTTTCACGTCATCAAGCTTATGGATTATCATCAATGGGAACCTCAAGATTCTCATCCCAAACGTGAAAGTGCAAGGAGATAA

Coding sequence (CDS)

ATGAAGTTTGCAAAAGATTTAGAAAAATGTGGTGAAAAGCAATTCAAATTACAACTTGTTAATTCATTCAGATTAGACGCCTATTCCTCGATACTTAAACGCCCTTCCTCTCTTTCCCGCCCTTTTGTAAGAGCAGAGTTTTTCTCTTTGTGGATCTCAAAGGATGGTAGGGATCAGGAGGTAGCTCAGCAGTTTCACGTCATCAAGCTTATGGATTATCATCAATGGGAACCTCAAGATTCTCATCCCAAACGTGAAAGTGCAAGGAGATAA

Protein sequence

MKFAKDLEKCGEKQFKLQLVNSFRLDAYSSILKRPSSLSRPFVRAEFFSLWISKDGRDQEVAQQFHVIKLMDYHQWEPQDSHPKRESARR
Homology
[Close]
BLAST of CsGy3G041080 vs. NCBI nr
Match: KGN60050.1 (hypothetical protein Csa_3G873790 [Cucumis sativus])

HSP 1 Score: 177.6 bits (449), Expect = 1.9e-41
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MKFAKDLEKCGEKQFKLQLVNSFRLDAYSSILKRPSSLSRPFVRAEFFSLWISKDGRDQE 60
          MKFAKDLEKCGEKQFKLQLVNSFRLDAYSSILKRPSSLSRPFVRAEFFSLWISKDGRDQE
Sbjct: 1  MKFAKDLEKCGEKQFKLQLVNSFRLDAYSSILKRPSSLSRPFVRAEFFSLWISKDGRDQE 60

Query: 61 VAQQFHVIKLMDYHQWEPQDSHPKRE 87
          VAQQFHVIKLMDYHQWEPQDSHPKRE
Sbjct: 61 VAQQFHVIKLMDYHQWEPQDSHPKRE 86

[Close]
BLAST of CsGy3G041080 vs. TrEMBL
Match: tr|A0A0A0LDL6|A0A0A0LDL6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G873790 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.3e-41
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MKFAKDLEKCGEKQFKLQLVNSFRLDAYSSILKRPSSLSRPFVRAEFFSLWISKDGRDQE 60
          MKFAKDLEKCGEKQFKLQLVNSFRLDAYSSILKRPSSLSRPFVRAEFFSLWISKDGRDQE
Sbjct: 1  MKFAKDLEKCGEKQFKLQLVNSFRLDAYSSILKRPSSLSRPFVRAEFFSLWISKDGRDQE 60

Query: 61 VAQQFHVIKLMDYHQWEPQDSHPKRE 87
          VAQQFHVIKLMDYHQWEPQDSHPKRE
Sbjct: 61 VAQQFHVIKLMDYHQWEPQDSHPKRE 86

The following BLAST results are available for this feature:
BLAST of CsGy3G041080 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN60050.11.9e-41100.00hypothetical protein Csa_3G873790 [Cucumis sativus][more]
BLAST of CsGy3G041080 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy3G041080 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy3G041080 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LDL6|A0A0A0LDL6_CUCSA1.3e-41100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G873790 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G041080.1CsGy3G041080.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy3G041080Csa3G873790Cucumber (Chinese Long) v2cgybcuB110
CsGy3G041080CsaV3_3G046010Cucumber (Chinese Long) v3cgybcucB117
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy3G041080Watermelon (97103) v2cgybwmbB211
CsGy3G041080Wax gourdcgybwgoB335
CsGy3G041080Cucumber (Gy14) v2cgybcgybB050
CsGy3G041080Cucurbita maxima (Rimu)cgybcmaB287
CsGy3G041080Cucurbita maxima (Rimu)cgybcmaB302
CsGy3G041080Cucurbita maxima (Rimu)cgybcmaB358
CsGy3G041080Cucurbita maxima (Rimu)cgybcmaB408
CsGy3G041080Cucurbita maxima (Rimu)cgybcmaB421
CsGy3G041080Cucurbita maxima (Rimu)cgybcmaB453
CsGy3G041080Cucurbita moschata (Rifu)cgybcmoB260
CsGy3G041080Cucurbita moschata (Rifu)cgybcmoB275
CsGy3G041080Cucurbita moschata (Rifu)cgybcmoB330
CsGy3G041080Cucurbita moschata (Rifu)cgybcmoB385
CsGy3G041080Cucurbita moschata (Rifu)cgybcmoB399
CsGy3G041080Cucurbita pepo (Zucchini)cgybcpeB298
CsGy3G041080Cucurbita pepo (Zucchini)cgybcpeB375
CsGy3G041080Cucurbita pepo (Zucchini)cgybcpeB387
CsGy3G041080Cucurbita pepo (Zucchini)cgybcpeB438
CsGy3G041080Cucurbita pepo (Zucchini)cgybcpeB443
CsGy3G041080Cucumber (Chinese Long) v2cgybcuB106
CsGy3G041080Bottle gourd (USVL1VR-Ls)cgyblsiB176
CsGy3G041080Melon (DHL92) v3.5.1cgybmeB185
CsGy3G041080Melon (DHL92) v3.5.1cgybmeB221
CsGy3G041080Melon (DHL92) v3.6.1cgybmedB186
CsGy3G041080Watermelon (Charleston Gray)cgybwcgB187
CsGy3G041080Watermelon (Charleston Gray)cgybwcgB188
CsGy3G041080Watermelon (Charleston Gray)cgybwcgB219
CsGy3G041080Watermelon (97103) v1cgybwmB235
CsGy3G041080Watermelon (97103) v1cgybwmB242
CsGy3G041080Wild cucumber (PI 183967)cgybcpiB106
CsGy3G041080Wild cucumber (PI 183967)cgybcpiB111
CsGy3G041080Silver-seed gourdcarcgybB0111
CsGy3G041080Silver-seed gourdcarcgybB0934