CsGy3G035510 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G035510
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	DNA-directed RNA polymerase V subunit 5A
Location	Chr3 : 33987491 .. 33991712 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATATAAAATAAAAACAAATTGCCCAAATTCTTTTATTTGGTTTATGGTATATATGTATTTTTTTTTTTTGCTAACATAACCCCAAATTTATAGACACAAATAGTAATAATAAATTCTTCCAAGATCGTTTTTAAAAATAAAAATTAAATTTAAGGGCTAAAAGAAATTATGCAAAAGTTGAAGGCATAATTGAAAATTTTGAAACGAATTCCACAGTGAATTTTACGAACTTTTTCCCATTTCTAAAGCAACAAAAAAAGGAGGAGAAACTGTAGGCTCTATTATCGGAGAGAGGGAGCGAAAATGGAGGAAGATGGGTTTGAAGCAGAGCCGAATCCAGTGGAGTTCGGCACTTGCTTGAGTTCCTACATCGACGATGGAACCACTGAGAGCCATAGATACTTCCTTTCTCGAAGAACAGTCGTGGAGATGCTTAAGGACCGAGGTTACACTATCAACTCCCCCAATATCGACTTCTCTCTTCAACAATTTCGAGAAACTTTTGGCCAATTCCCCGACGTTGATCGCCTAAAACTATCCGCCGCTCATCACTCCGATCCCTCCAAAAGAGTATGTCTCCACCGCTTCTTGCATTGTTTATTCCTTCCTGCTTCTTGTTTGTCTTAGTTAGTCAAATTAGGGTGGGTAATGCGAGTAAAGAAAGAGTGTCGATTCATTCTGTAGATTTCTTTGGGATTTATTGTTGAAATGAAACGGACTGAATTGCTTACCTTTCTCTACTAGTTTATGATTCAGGGAGGGACGGATTACTGAGGGAAATGCTTTACTTAGCCTGGACGAAACGTAGAAATTATTTAGAAATGTCTGAAAGGTTGATAATATAAATATAGTACCTTCTTGTAATATTTGTTATTTCATAACCGGATGTTGATTTTGCAGGTTCTTGTAGTGTTCTGTGGAACTGGTGCAGTAAAAGTTAATGCTATTCGCAATATTGCTGGTCAAATTGCTAATAAGGATAGTTTGCATGGTCTCATTTTAATTGTGCAAAATCAAATTACAAACCAAGCCATGAAAGCAGTTGAGCTCTTCTCGTTTAAGGTTGAAATATTCCAGGTTCGTTTCTTGAACTTGTGATGAATTTATTTAGTTTGACAGAAACATGAGCAGCGTCTTGGTAAATGCTTGGTCTCAACGAGTCATTTATTTGTTGCCATGCTGTGTTTTTAATATTTTCTTCATACTTAAGTTTTTGGTGTATTCAACACAATGGTCATTGCTGAAGTTGTTTTCTTAGTATACTAACAAACTGAAGTTGGCATTGACATGGGGAGCCCTGGTGAGGGAACAATTAACAATAGAGTTTGCCATGATAGAGAAGAGAAATAACTTAAAGAAGTAGATGTTCGGGTATTGAGACAATAGAGTGAACCCGACAATAACGAAATGTAGTAATACGGGAAGGGTTCTAAACCTTTTGTTTTTTTTATTAATTTCCCGGAGAGGGTGATGGGAAGCTTATCGTGTTTATTAATCTTGTCCAAGAACTTTTAGCAAGAAAATAATAATTTTTTTAGAGAAAGAAGCCTTCAATCAATAATTCATGGGGACTGTCAATGTAAAAATAGTCATTTTTTTGTTGAGGATCTCAGGGTGGAAAGATAGGGAGATCTCACAATCTTTAAAAGATATATGGTTTCGAGATGCCCCCATTTTTCTGTAATAACTTCCTACATTCTAGCAATCCTCGAACAAATTCAATCTTGAACTTAGAGAATAAGATTTTTTTGTTTCGTTTTTTCGTTTGCTCTTGTATATTCTTTCATAATGAAAACGTGGTCTTTTTTAGAAAGATTATCTTAAAAAGTTCATATGTTTAATTATATGTTGCTCATTTTTTAAAAATAATATTATTTTATGGTTTATCTAATTTTGGTACATTTTTCTATATTTCCTCAAATGACTGCACTGTTATTTTTTCTGGTATCAGATTACTGACTTGCTCGTCAACATCACAAAGCATGCTTTAAAGCCAAACCATCAAGTACTGACGGAGGAAGAAAAACAAAAGCTTTTGAAACAATACAGTATAGAAGAAAAACAGGTAAGATATTGAATAGTACCGTAAACAATATCTTGGCAAATTATATTTCCTTCCGCATGATTGCCTGTAGACTAAACTGTTTCTCATCTTAAACATGCTCCCCTGAACGACCAACAATTTCTTCTTTTCAATATTTATGCTAAACGCTGATAAGAGTCATATGTCAAAGGACATCTTTCAATATTTTCGTGGCTGCTACAGCTGGGATTTTGAATGAGCATACAGTATCTCTATCTCATTTGGGACTATCTTTTTTTTTTGGGGTAAAACTCATCTCAAGTGTGACATCATATAGGCTTATTTTGTCCTCCAATCATTAAGCTTTATCAGGGGGCGTTTAGACTTCTGGCTTGGCACCTTAAGCTTGGGTGCAATAACCTGTGGTCTTGGGAAGTTTGGGTCTAGGAAAATTGTGCATGAGAGGGTTTAGGGAGTTTTGTTCTAGGAAAAGTGCATATGAGGTGCAGCCTTACAGGTTTAGGAAAACTATGTGTGGTGCATGAATAATGTACTACTCAAGCCGGTTGGTGCCTCTAATTAAACCTGAGCTTTGGAACTTCTCTTCAAATGGGTTTGGGCTTAGAAAGTGAATCCCTCCCTAAGGCCAACCTAGGTTTTTGTATATTAAATCTATGGTTTGGCAAAGGGTTTTAGAAGATTGAGTTTATAATAACTGTGTCTGCTGTGTGAGTAGAAAGCTTTGGTTTGAGAAAACTGTGGGAGGTTGAATATAGCGAGTTACTGTTCAAGCCTATTGGTTTTTCCAATTAAACCTGGGTTTGGCAGCTTCTCTCTGAATGTGGTGTGACTTCTAGCCAAACATATGCACAAAACACCCCCTTAGTGCTAAGGAATGAATGATTGTGAAGATACGGTTTTTGTGGGCTCAAGTGACTCAGCCCATCCCATCAAAAAAGAAAAGGTGACCCATTACATGATACCTTACTTCAGACAAAAATCAATAATTAATATTTTGTGTGCTTGGTAGAGGGAATATAATGATTTTTTACGGTTTACTTTTTATAAAAAAATCTAGCTTTCATTTAGAAAAAAAGGAAGGAATAATTGAACTTTAAAGAGCTCTTTCCCTTAGTTACAACTTGAGTAACAGGAGTTACTACGTTAAAGCACAAAAACAGTTGCATATCTCTATTTCGTTTTGACGTCACTTTAGCCTTTTGGATCAATTTGTCCATACAAGATCACAGGAAGGGGCTAAATATTTCTTAGAGTTGTTGAAGGTTCCAGTCGCCCTGTTTGGAAAATAGAAATTGTGAAACAAAGCAATACAACCATTTCTGCTATGTGCTATTGCTTCTTGAATTCTCATGGACTCTGTTTCTTAAACTAGTACAAACAGTTGTTCAACCTCATGTCTTCATGCCTACTTTTGATACAATGCAGCTTCCTCGTATGTTACGTACGGATGCTATAGCTCGATATTATGGGCTGGAGAAAGGGCAGGTTGTGAAAGTGACTTACGATGGCGATATGACTAGGGCACACATAACTTACCGGTGTGTTTGGTGATGGACCTAGAGAGGCAGGTTTCACCAATCAACTTTTGGATTTCTTCCCCCATAAAACTCAGATTAGTTTTTGTCTTAAACATCTATGTTCCAGAACTTCTTCTATTTAATAGGTTTCGAGTGCAGATTTTTATGATTATGGGTTTCTTCAAGCAATCTGTATCACAATTACTGCAGCCATCCTTAACAAGGTACTTGTAACTCCCTCCAGTTGTGTATGAAAGAAAAGGAATGAAGCTAGCTGTAGGAGATGTATTTATATCCTTTTTCATTCCTTCATGTGTGAGAAACAAAACAATTTTCTAATCCTCACTCTTAACTTGTGAAGTATTTGTTTTGGATGGCAAGAGACTATGATGCTGATGCCTGGAAAAGAGGAGAATCAACCAAATTTTAAAAATAAGAATAGAAGTATTCTTTTACTAAAGATATAAAGTATTTTAATGAATTTACTTATATAGAGCCTTTAATCAGAACAATATTTTGTTTCATAATAGGTAGCAACTTTTCTAGGGCAAGTTTGCTTAATAATCAATTAACTAAAGTATTTATAAATATAGCATATTCTTACTTTTTATCAATGATATTTATAAATATTAAGATAGACCTACACTCTAGTTGATAAGTT

mRNA sequence

ATATAAAATAAAAACAAATTGCCCAAATTCTTTTATTTGGTTTATGGTATATATGTATTTTTTTTTTTTGCTAACATAACCCCAAATTTATAGACACAAATAGTAATAATAAATTCTTCCAAGATCGTTTTTAAAAATAAAAATTAAATTTAAGGGCTAAAAGAAATTATGCAAAAGTTGAAGGCATAATTGAAAATTTTGAAACGAATTCCACAGTGAATTTTACGAACTTTTTCCCATTTCTAAAGCAACAAAAAAAGGAGGAGAAACTGTAGGCTCTATTATCGGAGAGAGGGAGCGAAAATGGAGGAAGATGGGTTTGAAGCAGAGCCGAATCCAGTGGAGTTCGGCACTTGCTTGAGTTCCTACATCGACGATGGAACCACTGAGAGCCATAGATACTTCCTTTCTCGAAGAACAGTCGTGGAGATGCTTAAGGACCGAGGTTACACTATCAACTCCCCCAATATCGACTTCTCTCTTCAACAATTTCGAGAAACTTTTGGCCAATTCCCCGACGTTGATCGCCTAAAACTATCCGCCGCTCATCACTCCGATCCCTCCAAAAGAGTTCTTGTAGTGTTCTGTGGAACTGGTGCAGTAAAAGTTAATGCTATTCGCAATATTGCTGGTCAAATTGCTAATAAGGATAGTTTGCATGGTCTCATTTTAATTGTGCAAAATCAAATTACAAACCAAGCCATGAAAGCAGTTGAGCTCTTCTCGTTTAAGGTTGAAATATTCCAGATTACTGACTTGCTCGTCAACATCACAAAGCATGCTTTAAAGCCAAACCATCAAGTACTGACGGAGGAAGAAAAACAAAAGCTTTTGAAACAATACAGTATAGAAGAAAAACAGCTTCCTCGTATGTTACGTACGGATGCTATAGCTCGATATTATGGGCTGGAGAAAGGGCAGGTTGTGAAAGTGACTTACGATGGCGATATGACTAGGGCACACATAACTTACCGGTGTGTTTGGTGATGGACCTAGAGAGGCAGGTTTCACCAATCAACTTTTGGATTTCTTCCCCCATAAAACTCAGATTAGTTTTTGTCTTAAACATCTATGTTCCAGAACTTCTTCTATTTAATAGGTTTCGAGTGCAGATTTTTATGATTATGGGTTTCTTCAAGCAATCTGTATCACAATTACTGCAGCCATCCTTAACAAGGTACTTGTAACTCCCTCCAGTTGTGTATGAAAGAAAAGGAATGAAGCTAGCTGTAGGAGATGTATTTATATCCTTTTTCATTCCTTCATGTGTGAGAAACAAAACAATTTTCTAATCCTCACTCTTAACTTGTGAAGTATTTGTTTTGGATGGCAAGAGACTATGATGCTGATGCCTGGAAAAGAGGAGAATCAACCAAATTTTAAAAATAAGAATAGAAGTATTCTTTTACTAAAGATATAAAGTATTTTAATGAATTTACTTATATAGAGCCTTTAATCAGAACAATATTTTGTTTCATAATAGGTAGCAACTTTTCTAGGGCAAGTTTGCTTAATAATCAATTAACTAAAGTATTTATAAATATAGCATATTCTTACTTTTTATCAATGATATTTATAAATATTAAGATAGACCTACACTCTAGTTGATAAGTT

Coding sequence (CDS)

ATGGAGGAAGATGGGTTTGAAGCAGAGCCGAATCCAGTGGAGTTCGGCACTTGCTTGAGTTCCTACATCGACGATGGAACCACTGAGAGCCATAGATACTTCCTTTCTCGAAGAACAGTCGTGGAGATGCTTAAGGACCGAGGTTACACTATCAACTCCCCCAATATCGACTTCTCTCTTCAACAATTTCGAGAAACTTTTGGCCAATTCCCCGACGTTGATCGCCTAAAACTATCCGCCGCTCATCACTCCGATCCCTCCAAAAGAGTTCTTGTAGTGTTCTGTGGAACTGGTGCAGTAAAAGTTAATGCTATTCGCAATATTGCTGGTCAAATTGCTAATAAGGATAGTTTGCATGGTCTCATTTTAATTGTGCAAAATCAAATTACAAACCAAGCCATGAAAGCAGTTGAGCTCTTCTCGTTTAAGGTTGAAATATTCCAGATTACTGACTTGCTCGTCAACATCACAAAGCATGCTTTAAAGCCAAACCATCAAGTACTGACGGAGGAAGAAAAACAAAAGCTTTTGAAACAATACAGTATAGAAGAAAAACAGCTTCCTCGTATGTTACGTACGGATGCTATAGCTCGATATTATGGGCTGGAGAAAGGGCAGGTTGTGAAAGTGACTTACGATGGCGATATGACTAGGGCACACATAACTTACCGGTGTGTTTGGTGA

Protein sequence

MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPNIDFSLQQFRETFGQFPDVDRLKLSAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTRAHITYRCVW

Homology

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BLAST of CsGy3G035510 vs. NCBI nr
Match: XP_004136650.1 (PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Cucumis sativus] >KGN59468.1 hypothetical protein Csa_3G822200 [Cucumis sativus])

HSP 1 Score: 454.5 bits (1168), Expect = 2.1e-124
Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 0


Query: 1   MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPNIDFSL 60
           MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPNIDFSL
Sbjct: 1   MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPNIDFSL 60

Query: 61  QQFRETFGQFPDVDRLKLSAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG 120
           QQFRETFGQFPDVDRLKLSAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG
Sbjct: 61  QQFRETFGQFPDVDRLKLSAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG 120

Query: 121 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 180
           LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY
Sbjct: 121 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 180

Query: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTRAHITYRCVW 228
           SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTRAHITYRCVW
Sbjct: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTRAHITYRCVW 227

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BLAST of CsGy3G035510 vs. NCBI nr
Match: XP_008443287.1 (PREDICTED: DNA-directed RNA polymerase V subunit 5A [Cucumis melo])

HSP 1 Score: 440.7 bits (1132), Expect = 3.1e-120
Identity = 219/227 (96.48%), Postives = 223/227 (98.24%), Query Frame = 0


Query: 1   MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPNIDFSL 60
           MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSP+ID SL
Sbjct: 1   MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSL 60

Query: 61  QQFRETFGQFPDVDRLKLSAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG 120
           QQFR+ FGQ+PDVDRLKL AAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG
Sbjct: 61  QQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG 120

Query: 121 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 180
           LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY
Sbjct: 121 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 180

Query: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTRAHITYRCVW 228
           SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT AH+TYRCVW
Sbjct: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTSAHVTYRCVW 227

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BLAST of CsGy3G035510 vs. NCBI nr
Match: XP_023539155.1 (DNA-directed RNA polymerase V subunit 5A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 410.2 bits (1053), Expect = 4.5e-111
Identity = 200/227 (88.11%), Postives = 217/227 (95.59%), Query Frame = 0


Query: 1   MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPNIDFSL 60
           MEEDGF  EPN VE GTCLSSYIDDGTTESHRY+LSRRTV+EML+DRGYTIN  +ID +L
Sbjct: 1   MEEDGFLGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTINPSDIDLTL 60

Query: 61  QQFRETFGQFPDVDRLKLSAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG 120
           QQFRE +GQFPDVDRLKLSAAH +DPSKR+LV+FCGTGAVKV+AIRNIAGQI NK++LHG
Sbjct: 61  QQFREIYGQFPDVDRLKLSAAHGADPSKRILVIFCGTGAVKVSAIRNIAGQIVNKETLHG 120

Query: 121 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 180
           LILIVQNQITNQAMKAVE+FSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLL+QY
Sbjct: 121 LILIVQNQITNQAMKAVEVFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLEQY 180

Query: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTRAHITYRCVW 228
           SIEEKQLPRMLRTDAIARYYGLEKGQ+VKVTYDGDMTR+H+TYRCVW
Sbjct: 181 SIEEKQLPRMLRTDAIARYYGLEKGQIVKVTYDGDMTRSHVTYRCVW 227

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BLAST of CsGy3G035510 vs. NCBI nr
Match: XP_022971518.1 (DNA-directed RNA polymerase V subunit 5A isoform X2 [Cucurbita maxima])

HSP 1 Score: 407.9 bits (1047), Expect = 2.2e-110
Identity = 199/227 (87.67%), Postives = 216/227 (95.15%), Query Frame = 0


Query: 1   MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPNIDFSL 60
           MEEDGF  EPN VE GTCLSSYIDDGTTESHRY+LSRRTV+EML+DRGYTIN  +ID +L
Sbjct: 1   MEEDGFLGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTINPSDIDLTL 60

Query: 61  QQFRETFGQFPDVDRLKLSAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG 120
           QQFRE +GQFPDVDRLKLSAAH +DPSKR+LV+FCGTGAVKV+AIRNIAGQI NK++LHG
Sbjct: 61  QQFREIYGQFPDVDRLKLSAAHRADPSKRILVIFCGTGAVKVSAIRNIAGQIVNKETLHG 120

Query: 121 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 180
           LILIVQNQITNQAMKAVE+FSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLL+QY
Sbjct: 121 LILIVQNQITNQAMKAVEVFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLEQY 180

Query: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTRAHITYRCVW 228
           SIEEKQLPRMLRTDAIARYY LEKGQ+VKVTYDGDMTR+H+TYRCVW
Sbjct: 181 SIEEKQLPRMLRTDAIARYYRLEKGQIVKVTYDGDMTRSHVTYRCVW 227

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BLAST of CsGy3G035510 vs. NCBI nr
Match: XP_022950955.1 (DNA-directed RNA polymerase V subunit 5A isoform X2 [Cucurbita moschata])

HSP 1 Score: 407.1 bits (1045), Expect = 3.8e-110
Identity = 199/227 (87.67%), Postives = 216/227 (95.15%), Query Frame = 0


Query: 1   MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPNIDFSL 60
           MEEDGF  EPN VE GTCLSSYIDDGTTESHRY+LSRRTV+EML+DRGYTIN  +ID +L
Sbjct: 1   MEEDGFLGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTINPSDIDLTL 60

Query: 61  QQFRETFGQFPDVDRLKLSAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG 120
           QQFRE +GQF DVDRLKLSAAH +DPSKR+LV+FCGTGAVKV+AIRNIAGQI NK++LHG
Sbjct: 61  QQFREIYGQFLDVDRLKLSAAHRADPSKRILVIFCGTGAVKVSAIRNIAGQIVNKETLHG 120

Query: 121 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 180
           LILIVQNQITNQAMKAVE+FSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLL+QY
Sbjct: 121 LILIVQNQITNQAMKAVEVFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLEQY 180

Query: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTRAHITYRCVW 228
           SIEEKQLPRMLRTDAIARYYGLEKGQ+VKVTYDGDMTR+H+TYRCVW
Sbjct: 181 SIEEKQLPRMLRTDAIARYYGLEKGQIVKVTYDGDMTRSHVTYRCVW 227

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BLAST of CsGy3G035510 vs. TAIR10
Match: AT3G57080.1 (Eukaryotic rpb5 RNA polymerase subunit family protein)

HSP 1 Score: 279.6 bits (714), Expect = 1.7e-75
Identity = 130/210 (61.90%), Postives = 171/210 (81.43%), Query Frame = 0


Query: 18  CLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPNIDFSLQQFRETFGQFPDVDRLK 77
           CLS Y+D  + ESHRY+L+RR  ++ML+DRGY ++  +I+ SL  FR  +G+ PDVDRL+
Sbjct: 13  CLSKYVDLSSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLR 72

Query: 78  LSAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAV 137
           +SA H SD +K+V +VF GT  VKVNAIR++   I +++++ GLIL++QN +TNQA+KA+
Sbjct: 73  ISALHRSDSTKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAI 132

Query: 138 ELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIA 197
           ELFSFKVEIFQITDLLVNITKH+LKP HQVL +EEK  LLK++SIEEKQLPR+ + DAI 
Sbjct: 133 ELFSFKVEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKKDAIV 192

Query: 198 RYYGLEKGQVVKVTYDGDMTRAHITYRCVW 228
           RYYGLEKGQVVKV Y G++T +H+ +RCVW
Sbjct: 193 RYYGLEKGQVVKVNYRGELTESHVAFRCVW 222

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BLAST of CsGy3G035510 vs. TAIR10
Match: AT2G41340.1 (RNA polymerase II fifth largest subunit, D)

HSP 1 Score: 261.5 bits (667), Expect = 4.7e-70
Identity = 121/204 (59.31%), Postives = 165/204 (80.88%), Query Frame = 0


Query: 23  IDDGTTESHRYFLSRRTVVEMLKDRGYTINSPNIDFSLQQFRETFGQFPDVDRLKLSAAH 82
           I   + E H+Y+L+RRT +EML+DRGY ++  +I+ SLQQFR  +G+ PDVD L++SA H
Sbjct: 14  ISKSSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKH 73

Query: 83  HSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSF 142
             D SK++ VVFCGTG VKVNA+R IA  + +++++ GLIL++Q+ ITNQA+KAVELFSF
Sbjct: 74  RFDSSKKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAVELFSF 133

Query: 143 KVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGL 202
           KVE+F+ITDLLVN++KH L+P HQVL ++EK+ LLK++SIEEKQLPR+   D I RYYGL
Sbjct: 134 KVELFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLSSKDPIVRYYGL 193

Query: 203 EKGQVVKVTYDGDMTRAHITYRCV 227
           E GQV+KVTY  +++ +H+TYRCV
Sbjct: 194 ETGQVMKVTYKDELSESHVTYRCV 217

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BLAST of CsGy3G035510 vs. TAIR10
Match: AT3G54490.1 (RNA polymerase II fifth largest subunit, E)

HSP 1 Score: 198.4 bits (503), Expect = 4.9e-51
Identity = 98/226 (43.36%), Postives = 149/226 (65.93%), Query Frame = 0


Query: 2   EEDGFEAEPNPVEFGT-CLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPNIDFSL 61
           EE   E   +  + GT C+S   D G  ES R++L+R T  EML+DRGY +N   +  +L
Sbjct: 7   EEGCCENVESTFDDGTNCISKTEDTGGIESKRFYLARTTAFEMLRDRGYEVNEAELSLTL 66

Query: 62  QQFRETFGQFPDVDRLKLSAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG 121
            +FR  FG+ P+++RL++     SDP K++LVVF GT  + V ++R +  QI+N   LH 
Sbjct: 67  SEFRSVFGEKPELERLRICVPLRSDPKKKILVVFMGTEPITVKSVRALHIQISNNVGLHA 126

Query: 122 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 181
           +IL++Q+++ + A KA+  F F VE F I DLLVNITKH  +P  ++L +EEK++LL+++
Sbjct: 127 MILVLQSKMNHFAQKALTTFPFTVETFPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKH 186

Query: 182 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTRAHITYRCV 227
           ++E+KQLP +   D+  RYYGL+K QVVK+TY  +     +TYRC+
Sbjct: 187 ALEDKQLPYLQEKDSFVRYYGLKKKQVVKITYSKEPVGDFVTYRCI 232

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BLAST of CsGy3G035510 vs. TAIR10
Match: AT3G22320.1 (Eukaryotic rpb5 RNA polymerase subunit family protein)

HSP 1 Score: 124.8 bits (312), Expect = 6.9e-29
Identity = 72/200 (36.00%), Postives = 115/200 (57.50%), Query Frame = 0


Query: 29  ESHRYFLSRRTVVEMLKDRGYTINSPNIDFSLQQFRETFGQFPDVDRLKLSAAHHSDPSK 88
           E  R +  ++T+++ML+DRGY I    +  + QQF    G     + L    A  +D S 
Sbjct: 6   ELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDNSD 65

Query: 89  RVLVVFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFS--FKVEI 148
           ++ + F     V V  ++    ++   +++   IL+VQ  +T  A   +   S  F +E+
Sbjct: 66  QLYIFFPDEAKVGVKTMKMYTNRM-KSENVFRAILVVQQNLTPFARTCISEISSKFHLEV 125

Query: 149 FQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQ 208
           FQ  ++LVNI +H L P HQVLT EEK+ LL++Y+++E QLPR+  TD IARY+GL++GQ
Sbjct: 126 FQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQ 185

Query: 209 VVKVTYDGDMTRAHITYRCV 227
           VVK+    +    ++TYR V
Sbjct: 186 VVKIIRPSETAGRYVTYRYV 204

[Close]

BLAST of CsGy3G035510 vs. TAIR10
Match: AT5G57980.1 (RNA polymerase II fifth largest subunit, C)

HSP 1 Score: 96.3 bits (238), Expect = 2.6e-20
Identity = 65/207 (31.40%), Postives = 105/207 (50.72%), Query Frame = 0


Query: 23  IDDGTTESHRYFLSRRTVVEMLKDRGYTINSPNIDFSLQQFRETFGQF---PDVDRLKLS 82
           + D   E  R F  RRTV++ML+DRGYTI   +++   ++F + F +     + + L +S
Sbjct: 1   MSDMDDEITRIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVNKEALFVS 60

Query: 83  AAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVEL 142
           A    +P+ ++ V +     V V  I+         D +H  I++V   IT  A  AV  
Sbjct: 61  ANKGPNPADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARMAVSE 120

Query: 143 FS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIA 202
            +    +E+F+  +L+ NIT+H L   + VL ++ K              PR+L TD +A
Sbjct: 121 LNKMLTIEVFEEAELVTNITEHKLVNKYYVLDDQAKXXXXXXXXXXXXXXPRILVTDPLA 180

Query: 203 RYYGLEKGQVVKVTYDGDMTRAHITYR 225
           RYYGL++GQVVK+      +  + TYR
Sbjct: 181 RYYGLKRGQVVKIRRSDATSLDYYTYR 207

[Close]

BLAST of CsGy3G035510 vs. Swiss-Prot
Match: sp|Q9M1J2|RPE5A_ARATH (DNA-directed RNA polymerase V subunit 5A OS=Arabidopsis thaliana OX=3702 GN=NRPE5A PE=1 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 3.0e-74
Identity = 130/210 (61.90%), Postives = 171/210 (81.43%), Query Frame = 0


Query: 18  CLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPNIDFSLQQFRETFGQFPDVDRLK 77
           CLS Y+D  + ESHRY+L+RR  ++ML+DRGY ++  +I+ SL  FR  +G+ PDVDRL+
Sbjct: 13  CLSKYVDLSSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLR 72

Query: 78  LSAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAV 137
           +SA H SD +K+V +VF GT  VKVNAIR++   I +++++ GLIL++QN +TNQA+KA+
Sbjct: 73  ISALHRSDSTKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAI 132

Query: 138 ELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIA 197
           ELFSFKVEIFQITDLLVNITKH+LKP HQVL +EEK  LLK++SIEEKQLPR+ + DAI 
Sbjct: 133 ELFSFKVEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKKDAIV 192

Query: 198 RYYGLEKGQVVKVTYDGDMTRAHITYRCVW 228
           RYYGLEKGQVVKV Y G++T +H+ +RCVW
Sbjct: 193 RYYGLEKGQVVKVNYRGELTESHVAFRCVW 222

[Close]

BLAST of CsGy3G035510 vs. Swiss-Prot
Match: sp|Q9ZVB9|RPD5B_ARATH (DNA-directed RNA polymerases IV and V subunit 5B OS=Arabidopsis thaliana OX=3702 GN=NRPD5B PE=1 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 8.5e-69
Identity = 121/204 (59.31%), Postives = 165/204 (80.88%), Query Frame = 0


Query: 23  IDDGTTESHRYFLSRRTVVEMLKDRGYTINSPNIDFSLQQFRETFGQFPDVDRLKLSAAH 82
           I   + E H+Y+L+RRT +EML+DRGY ++  +I+ SLQQFR  +G+ PDVD L++SA H
Sbjct: 14  ISKSSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKH 73

Query: 83  HSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSF 142
             D SK++ VVFCGTG VKVNA+R IA  + +++++ GLIL++Q+ ITNQA+KAVELFSF
Sbjct: 74  RFDSSKKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAVELFSF 133

Query: 143 KVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGL 202
           KVE+F+ITDLLVN++KH L+P HQVL ++EK+ LLK++SIEEKQLPR+   D I RYYGL
Sbjct: 134 KVELFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLSSKDPIVRYYGL 193

Query: 203 EKGQVVKVTYDGDMTRAHITYRCV 227
           E GQV+KVTY  +++ +H+TYRCV
Sbjct: 194 ETGQVMKVTYKDELSESHVTYRCV 217

[Close]

BLAST of CsGy3G035510 vs. Swiss-Prot
Match: sp|Q9M1H8|RPE5C_ARATH (DNA-directed RNA polymerase V subunit 5C OS=Arabidopsis thaliana OX=3702 GN=NRPE5C PE=2 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 8.8e-50
Identity = 98/226 (43.36%), Postives = 149/226 (65.93%), Query Frame = 0


Query: 2   EEDGFEAEPNPVEFGT-CLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPNIDFSL 61
           EE   E   +  + GT C+S   D G  ES R++L+R T  EML+DRGY +N   +  +L
Sbjct: 7   EEGCCENVESTFDDGTNCISKTEDTGGIESKRFYLARTTAFEMLRDRGYEVNEAELSLTL 66

Query: 62  QQFRETFGQFPDVDRLKLSAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG 121
            +FR  FG+ P+++RL++     SDP K++LVVF GT  + V ++R +  QI+N   LH 
Sbjct: 67  SEFRSVFGEKPELERLRICVPLRSDPKKKILVVFMGTEPITVKSVRALHIQISNNVGLHA 126

Query: 122 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 181
           +IL++Q+++ + A KA+  F F VE F I DLLVNITKH  +P  ++L +EEK++LL+++
Sbjct: 127 MILVLQSKMNHFAQKALTTFPFTVETFPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKH 186

Query: 182 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTRAHITYRCV 227
           ++E+KQLP +   D+  RYYGL+K QVVK+TY  +     +TYRC+
Sbjct: 187 ALEDKQLPYLQEKDSFVRYYGLKKKQVVKITYSKEPVGDFVTYRCI 232

[Close]

BLAST of CsGy3G035510 vs. Swiss-Prot
Match: sp|A8XGH1|RPAB1_CAEBR (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis briggsae OX=6238 GN=rpb-5 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 5.9e-30
Identity = 73/209 (34.93%), Postives = 123/209 (58.85%), Query Frame = 0


Query: 25  DGTTESHRYFLSRRTVVEMLKDRGYTINSPNIDFSLQQFRETFGQFPDVDR-----LKLS 84
           D   E++R +  R+TV++M+ DRGY +    +D  L+ F+ETFG  P   +     L + 
Sbjct: 3   DDELETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLETFKETFGDRPSEKKPARSDLTIL 62

Query: 85  AAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVEL 144
            AH+ DP+ ++ V F     + +  I+ I  Q+  + ++   I++VQ  +T  A +++  
Sbjct: 63  VAHNDDPADQMFVFFPEDTKIGIKTIKAICQQM-QEQNISRAIIVVQTGMTPSAKQSIGD 122

Query: 145 FS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIA 204
            +  + +E F   +L+VNIT+H L P H V+T EEK +LL +Y +++ QLPR+ + D +A
Sbjct: 123 MAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPVA 182

Query: 205 RYYGLEKGQVVKVTYDGDMTRAHITYRCV 227
           RY+GL +GQVVK+    +    +ITYR V
Sbjct: 183 RYFGLRRGQVVKIIRPSETAGRYITYRLV 210

[Close]

BLAST of CsGy3G035510 vs. Swiss-Prot
Match: sp|Q9N5K2|RPAB1_CAEEL (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis elegans OX=6239 GN=rpb-5 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.5e-28
Identity = 70/209 (33.49%), Postives = 121/209 (57.89%), Query Frame = 0


Query: 25  DGTTESHRYFLSRRTVVEMLKDRGYTINSPNIDFSLQQFRETFGQFPDVDR-----LKLS 84
           D   E++R +  R+TV++M+ DRGY +    +D  L+ F+  +G  P   +     L + 
Sbjct: 3   DDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLTIL 62

Query: 85  AAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVEL 144
            AH+ DP+ ++ V F     + +  I+ I  Q+  + ++   I++VQ  +T  A +++  
Sbjct: 63  VAHNDDPADQMFVFFPEDAKIGIKTIKAICQQM-QEQNISRAIIVVQTGMTPSAKQSIGD 122

Query: 145 FS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIA 204
            +  + +E F   +L+VNIT+H L P H V+T EEK +LL +Y +++ QLPR+ + D +A
Sbjct: 123 MAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPVA 182

Query: 205 RYYGLEKGQVVKVTYDGDMTRAHITYRCV 227
           RY+GL +GQVVK+    +    +ITYR V
Sbjct: 183 RYFGLRRGQVVKIIRPSETAGRYITYRLV 210

[Close]

BLAST of CsGy3G035510 vs. TrEMBL
Match: tr|A0A0A0LCG9|A0A0A0LCG9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822200 PE=4 SV=1)

HSP 1 Score: 454.5 bits (1168), Expect = 1.4e-124
Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 0


Query: 1   MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPNIDFSL 60
           MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPNIDFSL
Sbjct: 1   MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPNIDFSL 60

Query: 61  QQFRETFGQFPDVDRLKLSAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG 120
           QQFRETFGQFPDVDRLKLSAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG
Sbjct: 61  QQFRETFGQFPDVDRLKLSAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG 120

Query: 121 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 180
           LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY
Sbjct: 121 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 180

Query: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTRAHITYRCVW 228
           SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTRAHITYRCVW
Sbjct: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTRAHITYRCVW 227

[Close]

BLAST of CsGy3G035510 vs. TrEMBL
Match: tr|A0A1S3B7M5|A0A1S3B7M5_CUCME (DNA-directed RNA polymerase V subunit 5A OS=Cucumis melo OX=3656 GN=LOC103486906 PE=4 SV=1)

HSP 1 Score: 440.7 bits (1132), Expect = 2.1e-120
Identity = 219/227 (96.48%), Postives = 223/227 (98.24%), Query Frame = 0


Query: 1   MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPNIDFSL 60
           MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSP+ID SL
Sbjct: 1   MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSL 60

Query: 61  QQFRETFGQFPDVDRLKLSAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG 120
           QQFR+ FGQ+PDVDRLKL AAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG
Sbjct: 61  QQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG 120

Query: 121 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 180
           LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY
Sbjct: 121 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 180

Query: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTRAHITYRCVW 228
           SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT AH+TYRCVW
Sbjct: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTSAHVTYRCVW 227

[Close]

BLAST of CsGy3G035510 vs. TrEMBL
Match: tr|B9ST46|B9ST46_RICCO (DNA-directed RNA polymerase II, putative OS=Ricinus communis OX=3988 GN=RCOM_0248850 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 3.7e-85
Identity = 158/212 (74.53%), Postives = 180/212 (84.91%), Query Frame = 0


Query: 16  GTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPNIDFSLQQFRETFGQFPDVDR 75
           G C SSY DDGT E+HRY+LSRRTV+EML+DRGY++ S  ID SLQ+FR   G  PD+DR
Sbjct: 27  GKCFSSYADDGTHETHRYYLSRRTVLEMLRDRGYSVPSSEIDLSLQEFRAIHGPNPDIDR 86

Query: 76  LKLSAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMK 135
           LK SA H SDPSKR+LV+F G G +KV+ IR IAGQI NKDSL GLIL++QNQITNQAMK
Sbjct: 87  LKFSATHTSDPSKRMLVLFGGPGIIKVSTIRAIAGQIVNKDSLTGLILVLQNQITNQAMK 146

Query: 136 AVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDA 195
           AV+LF FKVE+FQITDLLVNITKH LKP HQVLT+ EKQKLLK Y IEEKQLPR+LR DA
Sbjct: 147 AVDLFKFKVEMFQITDLLVNITKHVLKPKHQVLTDREKQKLLKDYCIEEKQLPRLLRKDA 206

Query: 196 IARYYGLEKGQVVKVTYDGDMTRAHITYRCVW 228
           IARYYGLEKGQVVKVTY G++T +H+TYRCVW
Sbjct: 207 IARYYGLEKGQVVKVTYSGEITESHVTYRCVW 238

[Close]

BLAST of CsGy3G035510 vs. TrEMBL
Match: tr|A0A061EW60|A0A061EW60_THECC (Eukaryotic rpb5 RNA polymerase subunit family protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_024387 PE=4 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 1.8e-84
Identity = 158/228 (69.30%), Postives = 190/228 (83.33%), Query Frame = 0


Query: 1   MEEDGFEAE-PNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPNIDFS 60
           ME +G E +  N    G CLS  +DDG+TESHRY+LSRRTV+EML+DRGY +    I+ S
Sbjct: 1   MEGNGLEGDGSNGEALGKCLSGVVDDGSTESHRYYLSRRTVLEMLRDRGYAVPISEINLS 60

Query: 61  LQQFRETFGQFPDVDRLKLSAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLH 120
           LQ+FR  +GQ PD DRL+LSA H +DPSKR+LVVF G G VKV+ IR IAG I NK+SL 
Sbjct: 61  LQEFRAIYGQSPDFDRLRLSATHKTDPSKRILVVFYGPGMVKVSGIRLIAGLITNKESLT 120

Query: 121 GLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQ 180
           GLIL++QN ITNQA+KA++LFSFKVEIFQITDLLVNITKH LKP HQVLTE+EKQKLL++
Sbjct: 121 GLILVLQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPKHQVLTEQEKQKLLQK 180

Query: 181 YSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTRAHITYRCVW 228
           YSIEEKQLPR+L+ DAIARYYG E+GQVVKV YDG++T++H+TYRCVW
Sbjct: 181 YSIEEKQLPRLLKKDAIARYYGYERGQVVKVMYDGEITQSHVTYRCVW 228

[Close]

BLAST of CsGy3G035510 vs. TrEMBL
Match: tr|A0A067K1X8|A0A067K1X8_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_22486 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 5.3e-84
Identity = 156/212 (73.58%), Postives = 184/212 (86.79%), Query Frame = 0


Query: 16  GTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPNIDFSLQQFRETFGQFPDVDR 75
           G CLSSY D+G+ ES RY+LSRRTV+EMLKDRGY I S +I+ SLQ+FR   GQ PD+DR
Sbjct: 27  GRCLSSYGDEGSAESCRYYLSRRTVLEMLKDRGYAIPSVDINISLQEFRAIHGQDPDIDR 86

Query: 76  LKLSAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMK 135
           LK+SA H S+P+KR+LV+FCG G VKV+++R IA QI NKD L GLILI+QNQITNQA+K
Sbjct: 87  LKISAIHKSNPNKRMLVIFCGPGVVKVSSVRVIAAQIVNKDILTGLILILQNQITNQALK 146

Query: 136 AVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDA 195
           A++LF FKVE+FQITDLLVNITKH LKP H+VLTE EKQKLLK+YSIEEKQLPR+L+ DA
Sbjct: 147 AMDLFKFKVEMFQITDLLVNITKHVLKPKHEVLTEREKQKLLKKYSIEEKQLPRLLKKDA 206

Query: 196 IARYYGLEKGQVVKVTYDGDMTRAHITYRCVW 228
           IARYYGLEKGQVVKVTY GD+T +H+TYRCVW
Sbjct: 207 IARYYGLEKGQVVKVTYSGDITESHVTYRCVW 238

The following BLAST results are available for this feature:

BLAST of CsGy3G035510 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136650.1	2.1e-124	100.00	PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Cucumis sativus] >KGN5...	[more]
XP_008443287.1	3.1e-120	96.48	PREDICTED: DNA-directed RNA polymerase V subunit 5A [Cucumis melo]	[more]
XP_023539155.1	4.5e-111	88.11	DNA-directed RNA polymerase V subunit 5A [Cucurbita pepo subsp. pepo]	[more]
XP_022971518.1	2.2e-110	87.67	DNA-directed RNA polymerase V subunit 5A isoform X2 [Cucurbita maxima]	[more]
XP_022950955.1	3.8e-110	87.67	DNA-directed RNA polymerase V subunit 5A isoform X2 [Cucurbita moschata]	[more]

BLAST of CsGy3G035510 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G57080.1	1.7e-75	61.90	Eukaryotic rpb5 RNA polymerase subunit family protein	[more]
AT2G41340.1	4.7e-70	59.31	RNA polymerase II fifth largest subunit, D	[more]
AT3G54490.1	4.9e-51	43.36	RNA polymerase II fifth largest subunit, E	[more]
AT3G22320.1	6.9e-29	36.00	Eukaryotic rpb5 RNA polymerase subunit family protein	[more]
AT5G57980.1	2.6e-20	31.40	RNA polymerase II fifth largest subunit, C	[more]

BLAST of CsGy3G035510 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M1J2\|RPE5A_ARATH	3.0e-74	61.90	DNA-directed RNA polymerase V subunit 5A OS=Arabidopsis thaliana OX=3702 GN=NRPE...	[more]
sp\|Q9ZVB9\|RPD5B_ARATH	8.5e-69	59.31	DNA-directed RNA polymerases IV and V subunit 5B OS=Arabidopsis thaliana OX=3702...	[more]
sp\|Q9M1H8\|RPE5C_ARATH	8.8e-50	43.36	DNA-directed RNA polymerase V subunit 5C OS=Arabidopsis thaliana OX=3702 GN=NRPE...	[more]
sp\|A8XGH1\|RPAB1_CAEBR	5.9e-30	34.93	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis bri...	[more]
sp\|Q9N5K2\|RPAB1_CAEEL	2.5e-28	33.49	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis ele...	[more]

BLAST of CsGy3G035510 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LCG9\|A0A0A0LCG9_CUCSA	1.4e-124	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822200 PE=4 SV=1	[more]
tr\|A0A1S3B7M5\|A0A1S3B7M5_CUCME	2.1e-120	96.48	DNA-directed RNA polymerase V subunit 5A OS=Cucumis melo OX=3656 GN=LOC103486906...	[more]
tr\|B9ST46\|B9ST46_RICCO	3.7e-85	74.53	DNA-directed RNA polymerase II, putative OS=Ricinus communis OX=3988 GN=RCOM_024...	[more]
tr\|A0A061EW60\|A0A061EW60_THECC	1.8e-84	69.30	Eukaryotic rpb5 RNA polymerase subunit family protein isoform 1 OS=Theobroma cac...	[more]
tr\|A0A067K1X8\|A0A067K1X8_JATCU	5.3e-84	73.58	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_22486 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003899	DNA-directed RNA polymerase activity
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035913	RPB5-like
IPR036710	RNA_pol_Rpb5_N_sf
IPR000783	RNA_pol_subH/Rpb5_C
IPR005571	RNA_pol_Rpb5_N
IPR014381	DNA_RNA_pol_RPB5_euk/virus

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005736	DNA-directed RNA polymerase I complex
cellular_component	GO:0005665	DNA-directed RNA polymerase II, core complex
cellular_component	GO:0005666	DNA-directed RNA polymerase III complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0001054	RNA polymerase I activity
molecular_function	GO:0001055	RNA polymerase II activity
molecular_function	GO:0001056	RNA polymerase III activity
molecular_function	GO:0003899	DNA-directed RNA polymerase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G035510.1	CsGy3G035510.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014381	DNA-directed RNA polymerase RPB5 subunit, eukaryote/virus	PIRSF	PIRSF000747	RPB5	coord: 22..227 e-value: 2.4E-78 score: 260.3
IPR005571	RNA polymerase, Rpb5, N-terminal	PFAM	PF03871	RNA_pol_Rpb5_N	coord: 28..111 e-value: 9.7E-22 score: 77.2
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	PFAM	PF01191	RNA_pol_Rpb5_C	coord: 154..226 e-value: 1.9E-29 score: 101.1
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	PRODOM	PD005155		coord: 161..226 e-value: 2.0E-19 score: 234.0
IPR036710	RNA polymerase Rpb5, N-terminal domain superfamily	GENE3D	G3DSA:3.40.1340.10		coord: 24..154 e-value: 2.3E-31 score: 110.7
IPR036710	RNA polymerase Rpb5, N-terminal domain superfamily	SUPERFAMILY	SSF53036	Eukaryotic RPB5 N-terminal domain	coord: 28..155
IPR035913	RPB5-like RNA polymerase subunit	GENE3D	G3DSA:3.90.940.20		coord: 155..226 e-value: 5.3E-29 score: 101.7
IPR035913	RPB5-like RNA polymerase subunit	SUPERFAMILY	SSF55287	RPB5-like RNA polymerase subunit	coord: 152..227
None	No IPR available	PANTHER	PTHR10535	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1	coord: 21..227
None	No IPR available	PANTHER	PTHR10535:SF2	DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A-RELATED	coord: 21..227

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G035510	Cla002896	Watermelon (97103) v1	cgybwmB187
CsGy3G035510	Csa3G822200	Cucumber (Chinese Long) v2	cgybcuB110
CsGy3G035510	MELO3C009776	Melon (DHL92) v3.5.1	cgybmeB184
CsGy3G035510	ClCG10G016030	Watermelon (Charleston Gray)	cgybwcgB179
CsGy3G035510	CSPI03G38030	Wild cucumber (PI 183967)	cgybcpiB111
CsGy3G035510	CmaCh06G000010	Cucurbita maxima (Rimu)	cgybcmaB439
CsGy3G035510	CmoCh06G000010	Cucurbita moschata (Rifu)	cgybcmoB410
CsGy3G035510	Lsi03G015910	Bottle gourd (USVL1VR-Ls)	cgyblsiB171
CsGy3G035510	Cp4.1LG08g13260	Cucurbita pepo (Zucchini)	cgybcpeB457
CsGy3G035510	MELO3C009776.2	Melon (DHL92) v3.6.1	cgybmedB185
CsGy3G035510	CsaV3_3G040420	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G035510	Cla97C10G198910	Watermelon (97103) v2	cgybwmbB178
CsGy3G035510	Bhi11G002357	Wax gourd	cgybwgoB211

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G035510	Cucurbita maxima (Rimu)	cgybcmaB306
CsGy3G035510	Cucurbita moschata (Rifu)	cgybcmoB279
CsGy3G035510	Cucurbita pepo (Zucchini)	cgybcpeB395
CsGy3G035510	Bottle gourd (USVL1VR-Ls)	cgyblsiB152
CsGy3G035510	Silver-seed gourd	carcgybB0263