CmaCh06G000010 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh06G000010
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	DNA-directed RNA polymerases IV and V subunit 5B
Location	Cma_Chr06 : 1787 .. 4979 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTATTTACTACTATTCCGGCCTTGGTTCTGTCCATAACCTCAAATTTGGCTTACACCCTACCCCCAAATTCCATTAGTTCATCCCAAAAGGGTACCCACTTCAAAATCTTTCACTAAAATCTAGCTCTCTAAAATCACAAGTATTTAACTTAATAAATATATGTGTGTATAATTCCCCATTTTCAAACCAAGAAACGCGAAGCTGTATCCGGGAAGAGAGAGAGAGCGAAAATGGAGGAAGATGGGTTTTTGGGAGAACCGAATCGAGTGGAGCTAGGCACTTGCTTAAGTAGCTACATCGACGATGGCACCACTGAGAGCCATAGGTACTATCTTTCTCGCAGAACAGTCTTGGAGATGCTTAGGGACCGAGGCTACACCATCAACCCCTCTGATATCGACCTCACTCTCCAACAATTCCGAGAAATTTACGGCCAGTTCCCCGATGTCGATCGCCTTAAACTATCTGCTGCTCATCGCGCCGATCCCTCCAAAAGAGTAACACCCCACCACTTCTTTTTTTCCCTTCGATTTATTTAAGCCTCGGTTGCTTAATTTGTTCTGCGGCGTCTTGTTTGTCATAGCAAATTAGGGTGCACAATGTGAGTACGAAAAGAAATGCTGTAGTTTCTCATAATATTTGGTTACTTTGAGAGTGTTTATTCGGCATGCTACTTTTGAATTTTGTTTGGAAGATAACGGTGCATGTTTTTTTTCTTCTTTTTTTTGATCATCGTTTAAATTCTGTGGACTAAACTTCTTATCTTCTTGAAAATTATTTGATGCAATCGTGCTTCTGAATTTTGAACACCTTATTTCACACCAATCTTTAGTAGTTTACGATTTATTATTGGCTTATGGAAATATTTGTTGTGAATTGTGGTTCAACATTGATGCTGAGTGAAGTATTTTTCTATATGTGGACGAAACATAGAAATTATTGTACAATAGAAATATAGGTCTTAATGATGATGCTTCATAGTTATGCAACTAGTCTAACATCGTTAATTATTATTTCAAAACTGATCATTGTTTTTGCAGATTCTTGTAATATTCTGTGGGACTGGTGCAGTAAAGGTTAGTGCTATTCGCAATATTGCTGGCCAAATTGTTAACAAAGAAACTTTGCATGGTCTCATTCTAATTGTGCAAAATCAAATTACAAACCAAGCCATGAAAGCAGTTGAGGTCTTTTCGTTCAAGGTTGAAATATTCCAGGTTCGTTTCTTCAGTTTTTGATGTAATCTTCACAATAGACACTGCTGAGGTTGTTATCTAATTACAACAACAACATAAACTGGTTAAATTAAACATTAACTGCAACATGGGGAACCAGAACACTAAAAGGGTGGGGGAGCAAGAGTTTGTCATGGTAGAAAACAAAAACTAATTAGAAGAAGAAACTGAGGTCTCAAGATTTGAGACAAGAGAGTCACCCCAAGAAAAATGAACCGCAGAAATAGGGGAAAGCTTGCAAACCCTTTTTTTTTTTATCCTTTCCTGAAAAAGGGTGATGAGAATCTTGTCATCTTTTATATCTATTCCATAAATTTTCACTAAGAAATTTTTATAATGGTTATGTTCTCTGGGAGTGAATTGTGAGCTAGGGAAGTTGAATAGATGAACTGCTTTGGTTGGTTGTGAGGTTGCCTCTTTCCTGTCTTTCTATTTAGATCTTGCCCTTGGTCATAACCCTTGCAGATTGTCTTTCTGGGATCTTGTCATGAGTAAGAAGCAAAAGCATTTAGCTTCTTGGAAAAGGTGTTCTTTTTCTCAAACGGGTCGACTTACTCTCATTCAATCGGTGGTGTGGTATTCTGACTTGCTTTCTTTCCTTAAAGTCCTTGGAGAAGCTTATGCGAGATCTTAGCGCTAAGTGGTTGTGGTGCTTTTCTCCCTAACTCATGACTTCCTTTGACATAGGGTTATTGCAAGCAAGTATGGTTCTCATCTTCATGACGGCTCTTTGAACAAGGCTTTCAATAGGAACCCTTTGAAGGTCACTTCTAGGAACCCTTTGGCATAGGGAAACGATGGACATCATTAACGTAACCTCCATACTTAGGTTGAGGGTGTTTCATTTCAGCCTGGAAGAGTGAATATTTGACTCTCGAGTCCTTGGATTTTAGAGGGGTTTTTTTTTTTCCTTGTAACTTTGAGTCTTTAGTTAACCCTTCTATGTCCTCTCATTCGGTCTTATACCACCTTAGATGTGAAATATGGAAAGCACCCTGTTGTATGTGTAAGCTACAATCTGATGTGAAAACTGGATTTTAGAATTGATACAGTAGTATTTATGAGAGTGGTTGCATGATGTAGAATGTTGCTTTAGACTACTAATGTAAGGCTAAGGGCTATCCTTAATCTTAAAAGGTTCATATGTTGATTGAGTTTTTTTCTGTTACCAGATTACTGACTTGCTGGTTAATATCACAAAGCATGCATTAAAGCCAAACCATCAGGTGCTAACGGAGGAAGAAAAACAAAAGCTTTTGGAACAATACAGTATAGAGGAAAAACAGGTAAAATCTGTATAGATATTAGTCTGTGTCTGCAGTTGCCTTATGCTTTGTAAACCTTTGAAGAAGGCTTTTTAGGAAACAAAACCCCTTCTCATGGTAAACATGCTTTTCTTGAATGACCAACAATTTCTCCTTTCCTAGCCTTCATTGGTTCAGTTTTTGAGAGTTTGGTTTGTTCTTCCTGTATGAAAAATATGAATTCTGAAAACCATAATATATGTGGTATAAAAATGAATTGAAGTAGTGCAACAAATTTTGATATATATTTGTTAAACTACCAGCACTTGCTTAATTAAGCCTACTTTTGATGTAATGCCAGCTTCCTCGTATGCTACGTACGGATGCCATTGCTCGATACTACAGACTCGAGAAGGGGCAGATTGTGAAAGTAACGTATGATGGTGACATGACTAGATCACATGTAACTTACCGTTGTGTCTGGTGATGGCCTATGAATGAATTCAGGTTTCACCAATTATGTTTTGTATTTTTAACCCCAAAGAACTTGATTACTTTTGTCTTAGACATCAATCAATGTTCCACAACTCCTTGTGTTACTAGCTTTTCAGTGCATGTTTCGAGGCATAATTTATAATATACATATCTCATTACTCTGCCATATACAACATTTGATATCTTTGAAATACAAGTTGTACTAGATGTTTACAAG

mRNA sequence

GTTATTTACTACTATTCCGGCCTTGGTTCTGTCCATAACCTCAAATTTGGCTTACACCCTACCCCCAAATTCCATTAGTTCATCCCAAAAGGGTACCCACTTCAAAATCTTTCACTAAAATCTAGCTCTCTAAAATCACAAGTATTTAACTTAATAAATATATGTGTGTATAATTCCCCATTTTCAAACCAAGAAACGCGAAGCTGTATCCGGGAAGAGAGAGAGAGCGAAAATGGAGGAAGATGGGTTTTTGGGAGAACCGAATCGAGTGGAGCTAGGCACTTGCTTAAGTAGCTACATCGACGATGGCACCACTGAGAGCCATAGGTACTATCTTTCTCGCAGAACAGTCTTGGAGATGCTTAGGGACCGAGGCTACACCATCAACCCCTCTGATATCGACCTCACTCTCCAACAATTCCGAGAAATTTACGGCCAGTTCCCCGATGTCGATCGCCTTAAACTATCTGCTGCTCATCGCGCCGATCCCTCCAAAAGAATTCTTGTAATATTCTGTGGGACTGGTGCAGTAAAGGTTAGTGCTATTCGCAATATTGCTGGCCAAATTGTTAACAAAGAAACTTTGCATGGTCTCATTCTAATTGTGCAAAATCAAATTACAAACCAAGCCATGAAAGCAGTTGAGGTCTTTTCGTTCAAGGTTGAAATATTCCAGATTACTGACTTGCTGGTTAATATCACAAAGCATGCATTAAAGCCAAACCATCAGGTGCTAACGGAGGAAGAAAAACAAAAGCTTTTGGAACAATACAGTATAGAGGAAAAACAGCTTCCTCGTATGCTACGTACGGATGCCATTGCTCGATACTACAGACTCGAGAAGGGGCAGATTGTGAAAGTAACGTATGATGGTGACATGACTAGATCACATGTAACTTACCGTTGTGTCTGGTGATGGCCTATGAATGAATTCAGGTTTCACCAATTATGTTTTGTATTTTTAACCCCAAAGAACTTGATTACTTTTGTCTTAGACATCAATCAATGTTCCACAACTCCTTGTGTTACTAGCTTTTCAGTGCATGTTTCGAGGCATAATTTATAATATACATATCTCATTACTCTGCCATATACAACATTTGATATCTTTGAAATACAAGTTGTACTAGATGTTTACAAG

Coding sequence (CDS)

ATGGAGGAAGATGGGTTTTTGGGAGAACCGAATCGAGTGGAGCTAGGCACTTGCTTAAGTAGCTACATCGACGATGGCACCACTGAGAGCCATAGGTACTATCTTTCTCGCAGAACAGTCTTGGAGATGCTTAGGGACCGAGGCTACACCATCAACCCCTCTGATATCGACCTCACTCTCCAACAATTCCGAGAAATTTACGGCCAGTTCCCCGATGTCGATCGCCTTAAACTATCTGCTGCTCATCGCGCCGATCCCTCCAAAAGAATTCTTGTAATATTCTGTGGGACTGGTGCAGTAAAGGTTAGTGCTATTCGCAATATTGCTGGCCAAATTGTTAACAAAGAAACTTTGCATGGTCTCATTCTAATTGTGCAAAATCAAATTACAAACCAAGCCATGAAAGCAGTTGAGGTCTTTTCGTTCAAGGTTGAAATATTCCAGATTACTGACTTGCTGGTTAATATCACAAAGCATGCATTAAAGCCAAACCATCAGGTGCTAACGGAGGAAGAAAAACAAAAGCTTTTGGAACAATACAGTATAGAGGAAAAACAGCTTCCTCGTATGCTACGTACGGATGCCATTGCTCGATACTACAGACTCGAGAAGGGGCAGATTGTGAAAGTAACGTATGATGGTGACATGACTAGATCACATGTAACTTACCGTTGTGTCTGGTGA

Protein sequence

MEEDGFLGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTINPSDIDLTLQQFREIYGQFPDVDRLKLSAAHRADPSKRILVIFCGTGAVKVSAIRNIAGQIVNKETLHGLILIVQNQITNQAMKAVEVFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLEQYSIEEKQLPRMLRTDAIARYYRLEKGQIVKVTYDGDMTRSHVTYRCVW

Homology

[Close]

BLAST of CmaCh06G000010 vs. Swiss-Prot
Match: RPE5A_ARATH (DNA-directed RNA polymerase V subunit 5A OS=Arabidopsis thaliana GN=NRPE5A PE=1 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 2.0e-75
Identity = 132/210 (62.86%), Postives = 174/210 (82.86%), Query Frame = 1


Query: 18  CLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTINPSDIDLTLQQFREIYGQFPDVDRLK 77
           CLS Y+D  + ESHRYYL+RR  L+MLRDRGY ++  DI+L+L  FR +YG+ PDVDRL+
Sbjct: 13  CLSKYVDLSSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLR 72

Query: 78  LSAAHRADPSKRILVIFCGTGAVKVSAIRNIAGQIVNKETLHGLILIVQNQITNQAMKAV 137
           +SA HR+D +K++ ++F GT  VKV+AIR++   I+++ET+ GLIL++QN +TNQA+KA+
Sbjct: 73  ISALHRSDSTKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAI 132

Query: 138 EVFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLEQYSIEEKQLPRMLRTDAIA 197
           E+FSFKVEIFQITDLLVNITKH+LKP HQVL +EEK  LL+++SIEEKQLPR+ + DAI 
Sbjct: 133 ELFSFKVEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKKDAIV 192

Query: 198 RYYRLEKGQIVKVTYDGDMTRSHVTYRCVW 228
           RYY LEKGQ+VKV Y G++T SHV +RCVW
Sbjct: 193 RYYGLEKGQVVKVNYRGELTESHVAFRCVW 222

[Close]

BLAST of CmaCh06G000010 vs. Swiss-Prot
Match: RPD5B_ARATH (DNA-directed RNA polymerases IV and V subunit 5B OS=Arabidopsis thaliana GN=NRPD5B PE=1 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 9.8e-70
Identity = 124/204 (60.78%), Postives = 167/204 (81.86%), Query Frame = 1


Query: 23  IDDGTTESHRYYLSRRTVLEMLRDRGYTINPSDIDLTLQQFREIYGQFPDVDRLKLSAAH 82
           I   + E H+YYL+RRT +EMLRDRGY ++  DI+L+LQQFR +YG+ PDVD L++SA H
Sbjct: 14  ISKSSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKH 73

Query: 83  RADPSKRILVIFCGTGAVKVSAIRNIAGQIVNKETLHGLILIVQNQITNQAMKAVEVFSF 142
           R D SK+I V+FCGTG VKV+A+R IA  ++++E + GLIL++Q+ ITNQA+KAVE+FSF
Sbjct: 74  RFDSSKKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAVELFSF 133

Query: 143 KVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLEQYSIEEKQLPRMLRTDAIARYYRL 202
           KVE+F+ITDLLVN++KH L+P HQVL ++EK+ LL+++SIEEKQLPR+   D I RYY L
Sbjct: 134 KVELFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLSSKDPIVRYYGL 193

Query: 203 EKGQIVKVTYDGDMTRSHVTYRCV 227
           E GQ++KVTY  +++ SHVTYRCV
Sbjct: 194 ETGQVMKVTYKDELSESHVTYRCV 217

[Close]

BLAST of CmaCh06G000010 vs. Swiss-Prot
Match: RPE5C_ARATH (DNA-directed RNA polymerase V subunit 5C OS=Arabidopsis thaliana GN=NRPE5C PE=2 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.3e-50
Identity = 95/209 (45.45%), Postives = 144/209 (68.90%), Query Frame = 1


Query: 18  CLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTINPSDIDLTLQQFREIYGQFPDVDRLK 77
           C+S   D G  ES R+YL+R T  EMLRDRGY +N +++ LTL +FR ++G+ P+++RL+
Sbjct: 24  CISKTEDTGGIESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELERLR 83

Query: 78  LSAAHRADPSKRILVIFCGTGAVKVSAIRNIAGQIVNKETLHGLILIVQNQITNQAMKAV 137
           +    R+DP K+ILV+F GT  + V ++R +  QI N   LH +IL++Q+++ + A KA+
Sbjct: 84  ICVPLRSDPKKKILVVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKAL 143

Query: 138 EVFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLEQYSIEEKQLPRMLRTDAIA 197
             F F VE F I DLLVNITKH  +P  ++L +EEK++LL ++++E+KQLP +   D+  
Sbjct: 144 TTFPFTVETFPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQLPYLQEKDSFV 203

Query: 198 RYYRLEKGQIVKVTYDGDMTRSHVTYRCV 227
           RYY L+K Q+VK+TY  +     VTYRC+
Sbjct: 204 RYYGLKKKQVVKITYSKEPVGDFVTYRCI 232

[Close]

BLAST of CmaCh06G000010 vs. Swiss-Prot
Match: RPB5A_ARATH (DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana GN=NRPB5A PE=1 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 7.6e-30
Identity = 78/200 (39.00%), Postives = 117/200 (58.50%), Query Frame = 1


Query: 29  ESHRYYLSRRTVLEMLRDRGYTINPSDIDLTLQQFREIYGQFPDVDRLKLSAAHRADPSK 88
           E  R Y  ++T+++MLRDRGY I  S++ +T QQF   +G     + L    A R D S 
Sbjct: 6   ELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDNSD 65

Query: 89  RILVIFCGTGAVKVSAIRNIAGQIVNKETLHGLILIVQNQITNQAMKAVEVFS--FKVEI 148
           ++ + F     V V  ++    ++   E +   IL+VQ  +T  A   +   S  F +E+
Sbjct: 66  QLYIFFPDEAKVGVKTMKMYTNRM-KSENVFRAILVVQQNLTPFARTCISEISSKFHLEV 125

Query: 149 FQITDLLVNITKHALKPNHQVLTEEEKQKLLEQYSIEEKQLPRMLRTDAIARYYRLEKGQ 208
           FQ  ++LVNI +H L P HQVLT EEK+ LLE+Y+++E QLPR+  TD IARY+ L++GQ
Sbjct: 126 FQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQ 185

Query: 209 IVKVTYDGDMTRSHVTYRCV 227
           +VK+    +    +VTYR V
Sbjct: 186 VVKIIRPSETAGRYVTYRYV 204

[Close]

BLAST of CmaCh06G000010 vs. Swiss-Prot
Match: RPAB1_CAEBR (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis briggsae GN=rpb-5 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.2e-28
Identity = 69/209 (33.01%), Postives = 121/209 (57.89%), Query Frame = 1


Query: 25  DGTTESHRYYLSRRTVLEMLRDRGYTINPSDIDLTLQQFREIYGQFPDVDR-----LKLS 84
           D   E++R +  R+TVL+M+ DRGY +   ++D  L+ F+E +G  P   +     L + 
Sbjct: 3   DDELETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLETFKETFGDRPSEKKPARSDLTIL 62

Query: 85  AAHRADPSKRILVIFCGTGAVKVSAIRNIAGQIVNKETLHGLILIVQNQITNQAMKAVEV 144
            AH  DP+ ++ V F     + +  I+ I  Q+  ++ +   I++VQ  +T  A +++  
Sbjct: 63  VAHNDDPADQMFVFFPEDTKIGIKTIKAICQQM-QEQNISRAIIVVQTGMTPSAKQSIGD 122

Query: 145 FS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLEQYSIEEKQLPRMLRTDAIA 204
            +  + +E F   +L+VNIT+H L P H V+T EEK +LL +Y +++ QLPR+ + D +A
Sbjct: 123 MAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPVA 182

Query: 205 RYYRLEKGQIVKVTYDGDMTRSHVTYRCV 227
           RY+ L +GQ+VK+    +    ++TYR V
Sbjct: 183 RYFGLRRGQVVKIIRPSETAGRYITYRLV 210

[Close]

BLAST of CmaCh06G000010 vs. TrEMBL
Match: A0A0A0LCG9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G822200 PE=4 SV=1)

HSP 1 Score: 406.8 bits (1044), Expect = 1.8e-110
Identity = 199/227 (87.67%), Postives = 216/227 (95.15%), Query Frame = 1


Query: 1   MEEDGFLGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTINPSDIDLTL 60
           MEEDGF  EPN VE GTCLSSYIDDGTTESHRY+LSRRTV+EML+DRGYTIN  +ID +L
Sbjct: 1   MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPNIDFSL 60

Query: 61  QQFREIYGQFPDVDRLKLSAAHRADPSKRILVIFCGTGAVKVSAIRNIAGQIVNKETLHG 120
           QQFRE +GQFPDVDRLKLSAAH +DPSKR+LV+FCGTGAVKV+AIRNIAGQI NK++LHG
Sbjct: 61  QQFRETFGQFPDVDRLKLSAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG 120

Query: 121 LILIVQNQITNQAMKAVEVFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLEQY 180
           LILIVQNQITNQAMKAVE+FSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLL+QY
Sbjct: 121 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 180

Query: 181 SIEEKQLPRMLRTDAIARYYRLEKGQIVKVTYDGDMTRSHVTYRCVW 228
           SIEEKQLPRMLRTDAIARYY LEKGQ+VKVTYDGDMTR+H+TYRCVW
Sbjct: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTRAHITYRCVW 227

[Close]

BLAST of CmaCh06G000010 vs. TrEMBL
Match: A0A061EW60_THECC (Eukaryotic rpb5 RNA polymerase subunit family protein isoform 1 OS=Theobroma cacao GN=TCM_024387 PE=4 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 1.6e-87
Identity = 165/228 (72.37%), Postives = 195/228 (85.53%), Query Frame = 1


Query: 1   MEEDGFLGEPNRVE-LGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTINPSDIDLT 60
           ME +G  G+ +  E LG CLS  +DDG+TESHRYYLSRRTVLEMLRDRGY +  S+I+L+
Sbjct: 1   MEGNGLEGDGSNGEALGKCLSGVVDDGSTESHRYYLSRRTVLEMLRDRGYAVPISEINLS 60

Query: 61  LQQFREIYGQFPDVDRLKLSAAHRADPSKRILVIFCGTGAVKVSAIRNIAGQIVNKETLH 120
           LQ+FR IYGQ PD DRL+LSA H+ DPSKRILV+F G G VKVS IR IAG I NKE+L 
Sbjct: 61  LQEFRAIYGQSPDFDRLRLSATHKTDPSKRILVVFYGPGMVKVSGIRLIAGLITNKESLT 120

Query: 121 GLILIVQNQITNQAMKAVEVFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLEQ 180
           GLIL++QN ITNQA+KA+++FSFKVEIFQITDLLVNITKH LKP HQVLTE+EKQKLL++
Sbjct: 121 GLILVLQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPKHQVLTEQEKQKLLQK 180

Query: 181 YSIEEKQLPRMLRTDAIARYYRLEKGQIVKVTYDGDMTRSHVTYRCVW 228
           YSIEEKQLPR+L+ DAIARYY  E+GQ+VKV YDG++T+SHVTYRCVW
Sbjct: 181 YSIEEKQLPRLLKKDAIARYYGYERGQVVKVMYDGEITQSHVTYRCVW 228

[Close]

BLAST of CmaCh06G000010 vs. TrEMBL
Match: A0A151RUY1_CAJCA (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Cajanus cajan GN=KK1_032068 PE=4 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 8.1e-87
Identity = 158/210 (75.24%), Postives = 185/210 (88.10%), Query Frame = 1


Query: 18  CLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTINPSDIDLTLQQFREIYGQFPDVDRLK 77
           CLS +IDDGT ESHRYYLSR+T LEMLRDRGY+++P DIDL+L +FR IYG  PD DRL+
Sbjct: 17  CLSKFIDDGTVESHRYYLSRKTTLEMLRDRGYSVSPQDIDLSLSEFRNIYGPSPDTDRLR 76

Query: 78  LSAAHRADPSKRILVIFCGTGAVKVSAIRNIAGQIVNKETLHGLILIVQNQITNQAMKAV 137
           LS  H ++PSKR+LVIFCGTG VKVS +RNI+GQIVN+ETL GLILIVQN IT+QA+KAV
Sbjct: 77  LSLPHASNPSKRVLVIFCGTGVVKVSDVRNISGQIVNRETLTGLILIVQNNITSQALKAV 136

Query: 138 EVFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLEQYSIEEKQLPRMLRTDAIA 197
             FSFKVEIFQITDLLVNITKH LKP HQVLT+ +K+ LL++Y+IEEKQLPRML+TDAIA
Sbjct: 137 NSFSFKVEIFQITDLLVNITKHVLKPKHQVLTDRQKKNLLKKYNIEEKQLPRMLQTDAIA 196

Query: 198 RYYRLEKGQIVKVTYDGDMTRSHVTYRCVW 228
           RYY LEKGQ+VKVTY G++T+ HVTYRCVW
Sbjct: 197 RYYGLEKGQVVKVTYSGEITQMHVTYRCVW 226

[Close]

BLAST of CmaCh06G000010 vs. TrEMBL
Match: B9ST46_RICCO (DNA-directed RNA polymerase II, putative OS=Ricinus communis GN=RCOM_0248850 PE=4 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 1.8e-86
Identity = 161/217 (74.19%), Postives = 186/217 (85.71%), Query Frame = 1


Query: 11  NRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTINPSDIDLTLQQFREIYGQF 70
           N   LG C SSY DDGT E+HRYYLSRRTVLEMLRDRGY++  S+IDL+LQ+FR I+G  
Sbjct: 22  NMEGLGKCFSSYADDGTHETHRYYLSRRTVLEMLRDRGYSVPSSEIDLSLQEFRAIHGPN 81

Query: 71  PDVDRLKLSAAHRADPSKRILVIFCGTGAVKVSAIRNIAGQIVNKETLHGLILIVQNQIT 130
           PD+DRLK SA H +DPSKR+LV+F G G +KVS IR IAGQIVNK++L GLIL++QNQIT
Sbjct: 82  PDIDRLKFSATHTSDPSKRMLVLFGGPGIIKVSTIRAIAGQIVNKDSLTGLILVLQNQIT 141

Query: 131 NQAMKAVEVFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLEQYSIEEKQLPRM 190
           NQAMKAV++F FKVE+FQITDLLVNITKH LKP HQVLT+ EKQKLL+ Y IEEKQLPR+
Sbjct: 142 NQAMKAVDLFKFKVEMFQITDLLVNITKHVLKPKHQVLTDREKQKLLKDYCIEEKQLPRL 201

Query: 191 LRTDAIARYYRLEKGQIVKVTYDGDMTRSHVTYRCVW 228
           LR DAIARYY LEKGQ+VKVTY G++T SHVTYRCVW
Sbjct: 202 LRKDAIARYYGLEKGQVVKVTYSGEITESHVTYRCVW 238

[Close]

BLAST of CmaCh06G000010 vs. TrEMBL
Match: A0A067K1X8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22486 PE=4 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 9.9e-85
Identity = 157/213 (73.71%), Postives = 188/213 (88.26%), Query Frame = 1


Query: 15  LGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTINPSDIDLTLQQFREIYGQFPDVD 74
           LG CLSSY D+G+ ES RYYLSRRTVLEML+DRGY I   DI+++LQ+FR I+GQ PD+D
Sbjct: 26  LGRCLSSYGDEGSAESCRYYLSRRTVLEMLKDRGYAIPSVDINISLQEFRAIHGQDPDID 85

Query: 75  RLKLSAAHRADPSKRILVIFCGTGAVKVSAIRNIAGQIVNKETLHGLILIVQNQITNQAM 134
           RLK+SA H+++P+KR+LVIFCG G VKVS++R IA QIVNK+ L GLILI+QNQITNQA+
Sbjct: 86  RLKISAIHKSNPNKRMLVIFCGPGVVKVSSVRVIAAQIVNKDILTGLILILQNQITNQAL 145

Query: 135 KAVEVFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLEQYSIEEKQLPRMLRTD 194
           KA+++F FKVE+FQITDLLVNITKH LKP H+VLTE EKQKLL++YSIEEKQLPR+L+ D
Sbjct: 146 KAMDLFKFKVEMFQITDLLVNITKHVLKPKHEVLTEREKQKLLKKYSIEEKQLPRLLKKD 205

Query: 195 AIARYYRLEKGQIVKVTYDGDMTRSHVTYRCVW 228
           AIARYY LEKGQ+VKVTY GD+T SHVTYRCVW
Sbjct: 206 AIARYYGLEKGQVVKVTYSGDITESHVTYRCVW 238

[Close]

BLAST of CmaCh06G000010 vs. TAIR10
Match: AT3G57080.1 (AT3G57080.1 Eukaryotic rpb5 RNA polymerase subunit family protein)

HSP 1 Score: 283.5 bits (724), Expect = 1.2e-76
Identity = 132/210 (62.86%), Postives = 174/210 (82.86%), Query Frame = 1


Query: 18  CLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTINPSDIDLTLQQFREIYGQFPDVDRLK 77
           CLS Y+D  + ESHRYYL+RR  L+MLRDRGY ++  DI+L+L  FR +YG+ PDVDRL+
Sbjct: 13  CLSKYVDLSSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLR 72

Query: 78  LSAAHRADPSKRILVIFCGTGAVKVSAIRNIAGQIVNKETLHGLILIVQNQITNQAMKAV 137
           +SA HR+D +K++ ++F GT  VKV+AIR++   I+++ET+ GLIL++QN +TNQA+KA+
Sbjct: 73  ISALHRSDSTKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAI 132

Query: 138 EVFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLEQYSIEEKQLPRMLRTDAIA 197
           E+FSFKVEIFQITDLLVNITKH+LKP HQVL +EEK  LL+++SIEEKQLPR+ + DAI 
Sbjct: 133 ELFSFKVEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKKDAIV 192

Query: 198 RYYRLEKGQIVKVTYDGDMTRSHVTYRCVW 228
           RYY LEKGQ+VKV Y G++T SHV +RCVW
Sbjct: 193 RYYGLEKGQVVKVNYRGELTESHVAFRCVW 222

[Close]

BLAST of CmaCh06G000010 vs. TAIR10
Match: AT2G41340.1 (AT2G41340.1 RNA polymerase II fifth largest subunit, D)

HSP 1 Score: 264.6 bits (675), Expect = 5.5e-71
Identity = 124/204 (60.78%), Postives = 167/204 (81.86%), Query Frame = 1


Query: 23  IDDGTTESHRYYLSRRTVLEMLRDRGYTINPSDIDLTLQQFREIYGQFPDVDRLKLSAAH 82
           I   + E H+YYL+RRT +EMLRDRGY ++  DI+L+LQQFR +YG+ PDVD L++SA H
Sbjct: 14  ISKSSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKH 73

Query: 83  RADPSKRILVIFCGTGAVKVSAIRNIAGQIVNKETLHGLILIVQNQITNQAMKAVEVFSF 142
           R D SK+I V+FCGTG VKV+A+R IA  ++++E + GLIL++Q+ ITNQA+KAVE+FSF
Sbjct: 74  RFDSSKKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAVELFSF 133

Query: 143 KVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLEQYSIEEKQLPRMLRTDAIARYYRL 202
           KVE+F+ITDLLVN++KH L+P HQVL ++EK+ LL+++SIEEKQLPR+   D I RYY L
Sbjct: 134 KVELFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLSSKDPIVRYYGL 193

Query: 203 EKGQIVKVTYDGDMTRSHVTYRCV 227
           E GQ++KVTY  +++ SHVTYRCV
Sbjct: 194 ETGQVMKVTYKDELSESHVTYRCV 217

[Close]

BLAST of CmaCh06G000010 vs. TAIR10
Match: AT3G54490.1 (AT3G54490.1 RNA polymerase II fifth largest subunit, E)

HSP 1 Score: 200.3 bits (508), Expect = 1.3e-51
Identity = 95/209 (45.45%), Postives = 144/209 (68.90%), Query Frame = 1


Query: 18  CLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTINPSDIDLTLQQFREIYGQFPDVDRLK 77
           C+S   D G  ES R+YL+R T  EMLRDRGY +N +++ LTL +FR ++G+ P+++RL+
Sbjct: 24  CISKTEDTGGIESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELERLR 83

Query: 78  LSAAHRADPSKRILVIFCGTGAVKVSAIRNIAGQIVNKETLHGLILIVQNQITNQAMKAV 137
           +    R+DP K+ILV+F GT  + V ++R +  QI N   LH +IL++Q+++ + A KA+
Sbjct: 84  ICVPLRSDPKKKILVVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKAL 143

Query: 138 EVFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLEQYSIEEKQLPRMLRTDAIA 197
             F F VE F I DLLVNITKH  +P  ++L +EEK++LL ++++E+KQLP +   D+  
Sbjct: 144 TTFPFTVETFPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQLPYLQEKDSFV 203

Query: 198 RYYRLEKGQIVKVTYDGDMTRSHVTYRCV 227
           RYY L+K Q+VK+TY  +     VTYRC+
Sbjct: 204 RYYGLKKKQVVKITYSKEPVGDFVTYRCI 232

[Close]

BLAST of CmaCh06G000010 vs. TAIR10
Match: AT3G22320.1 (AT3G22320.1 Eukaryotic rpb5 RNA polymerase subunit family protein)

HSP 1 Score: 132.1 bits (331), Expect = 4.3e-31
Identity = 78/200 (39.00%), Postives = 117/200 (58.50%), Query Frame = 1


Query: 29  ESHRYYLSRRTVLEMLRDRGYTINPSDIDLTLQQFREIYGQFPDVDRLKLSAAHRADPSK 88
           E  R Y  ++T+++MLRDRGY I  S++ +T QQF   +G     + L    A R D S 
Sbjct: 6   ELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDNSD 65

Query: 89  RILVIFCGTGAVKVSAIRNIAGQIVNKETLHGLILIVQNQITNQAMKAVEVFS--FKVEI 148
           ++ + F     V V  ++    ++   E +   IL+VQ  +T  A   +   S  F +E+
Sbjct: 66  QLYIFFPDEAKVGVKTMKMYTNRM-KSENVFRAILVVQQNLTPFARTCISEISSKFHLEV 125

Query: 149 FQITDLLVNITKHALKPNHQVLTEEEKQKLLEQYSIEEKQLPRMLRTDAIARYYRLEKGQ 208
           FQ  ++LVNI +H L P HQVLT EEK+ LLE+Y+++E QLPR+  TD IARY+ L++GQ
Sbjct: 126 FQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQ 185

Query: 209 IVKVTYDGDMTRSHVTYRCV 227
           +VK+    +    +VTYR V
Sbjct: 186 VVKIIRPSETAGRYVTYRYV 204

[Close]

BLAST of CmaCh06G000010 vs. TAIR10
Match: AT5G57980.1 (AT5G57980.1 RNA polymerase II fifth largest subunit, C)

HSP 1 Score: 115.2 bits (287), Expect = 5.4e-26
Identity = 72/207 (34.78%), Postives = 118/207 (57.00%), Query Frame = 1


Query: 23  IDDGTTESHRYYLSRRTVLEMLRDRGYTINPSDIDLTLQQFREIYGQFPDV---DRLKLS 82
           + D   E  R +  RRTVL+MLRDRGYTI  SD++L  ++F + + +  +    + L +S
Sbjct: 1   MSDMDDEITRIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVNKEALFVS 60

Query: 83  AAHRADPSKRILVIFCGTGAVKVSAIRNIAGQIVNKETLHGLILIVQNQITNQAMKAVEV 142
           A    +P+ +I V +     V V  I+      +  + +H  I++V   IT  A  AV  
Sbjct: 61  ANKGPNPADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARMAVSE 120

Query: 143 FS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLEQYSIEEKQLPRMLRTDAIA 202
            +    +E+F+  +L+ NIT+H L   + VL ++ K+KLL  Y++++ QLPR+L TD +A
Sbjct: 121 LNKMLTIEVFEEAELVTNITEHKLVNKYYVLDDQAKKKLLNTYTVQDTQLPRILVTDPLA 180

Query: 203 RYYRLEKGQIVKVTYDGDMTRSHVTYR 225
           RYY L++GQ+VK+      +  + TYR
Sbjct: 181 RYYGLKRGQVVKIRRSDATSLDYYTYR 207

[Close]

BLAST of CmaCh06G000010 vs. NCBI nr
Match: gi|449437743|ref|XP_004136650.1| (PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Cucumis sativus])

HSP 1 Score: 406.8 bits (1044), Expect = 2.6e-110
Identity = 199/227 (87.67%), Postives = 216/227 (95.15%), Query Frame = 1


Query: 1   MEEDGFLGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTINPSDIDLTL 60
           MEEDGF  EPN VE GTCLSSYIDDGTTESHRY+LSRRTV+EML+DRGYTIN  +ID +L
Sbjct: 1   MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPNIDFSL 60

Query: 61  QQFREIYGQFPDVDRLKLSAAHRADPSKRILVIFCGTGAVKVSAIRNIAGQIVNKETLHG 120
           QQFRE +GQFPDVDRLKLSAAH +DPSKR+LV+FCGTGAVKV+AIRNIAGQI NK++LHG
Sbjct: 61  QQFRETFGQFPDVDRLKLSAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG 120

Query: 121 LILIVQNQITNQAMKAVEVFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLEQY 180
           LILIVQNQITNQAMKAVE+FSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLL+QY
Sbjct: 121 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 180

Query: 181 SIEEKQLPRMLRTDAIARYYRLEKGQIVKVTYDGDMTRSHVTYRCVW 228
           SIEEKQLPRMLRTDAIARYY LEKGQ+VKVTYDGDMTR+H+TYRCVW
Sbjct: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTRAHITYRCVW 227

[Close]

BLAST of CmaCh06G000010 vs. NCBI nr
Match: gi|659085180|ref|XP_008443287.1| (PREDICTED: DNA-directed RNA polymerase V subunit 5A [Cucumis melo])

HSP 1 Score: 405.6 bits (1041), Expect = 5.7e-110
Identity = 199/227 (87.67%), Postives = 216/227 (95.15%), Query Frame = 1


Query: 1   MEEDGFLGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTINPSDIDLTL 60
           MEEDGF  EPN VE GTCLSSYIDDGTTESHRY+LSRRTV+EML+DRGYTIN  DIDL+L
Sbjct: 1   MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSL 60

Query: 61  QQFREIYGQFPDVDRLKLSAAHRADPSKRILVIFCGTGAVKVSAIRNIAGQIVNKETLHG 120
           QQFR+I+GQ+PDVDRLKL AAH +DPSKR+LV+FCGTGAVKV+AIRNIAGQI NK++LHG
Sbjct: 61  QQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG 120

Query: 121 LILIVQNQITNQAMKAVEVFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLEQY 180
           LILIVQNQITNQAMKAVE+FSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLL+QY
Sbjct: 121 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 180

Query: 181 SIEEKQLPRMLRTDAIARYYRLEKGQIVKVTYDGDMTRSHVTYRCVW 228
           SIEEKQLPRMLRTDAIARYY LEKGQ+VKVTYDGDMT +HVTYRCVW
Sbjct: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTSAHVTYRCVW 227

[Close]

BLAST of CmaCh06G000010 vs. NCBI nr
Match: gi|590635085|ref|XP_007028544.1| (Eukaryotic rpb5 RNA polymerase subunit family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 330.5 bits (846), Expect = 2.3e-87
Identity = 165/228 (72.37%), Postives = 195/228 (85.53%), Query Frame = 1


Query: 1   MEEDGFLGEPNRVE-LGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTINPSDIDLT 60
           ME +G  G+ +  E LG CLS  +DDG+TESHRYYLSRRTVLEMLRDRGY +  S+I+L+
Sbjct: 1   MEGNGLEGDGSNGEALGKCLSGVVDDGSTESHRYYLSRRTVLEMLRDRGYAVPISEINLS 60

Query: 61  LQQFREIYGQFPDVDRLKLSAAHRADPSKRILVIFCGTGAVKVSAIRNIAGQIVNKETLH 120
           LQ+FR IYGQ PD DRL+LSA H+ DPSKRILV+F G G VKVS IR IAG I NKE+L 
Sbjct: 61  LQEFRAIYGQSPDFDRLRLSATHKTDPSKRILVVFYGPGMVKVSGIRLIAGLITNKESLT 120

Query: 121 GLILIVQNQITNQAMKAVEVFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLEQ 180
           GLIL++QN ITNQA+KA+++FSFKVEIFQITDLLVNITKH LKP HQVLTE+EKQKLL++
Sbjct: 121 GLILVLQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPKHQVLTEQEKQKLLQK 180

Query: 181 YSIEEKQLPRMLRTDAIARYYRLEKGQIVKVTYDGDMTRSHVTYRCVW 228
           YSIEEKQLPR+L+ DAIARYY  E+GQ+VKV YDG++T+SHVTYRCVW
Sbjct: 181 YSIEEKQLPRLLKKDAIARYYGYERGQVVKVMYDGEITQSHVTYRCVW 228

[Close]

BLAST of CmaCh06G000010 vs. NCBI nr
Match: gi|1012335000|gb|KYP46343.1| (DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Cajanus cajan])

HSP 1 Score: 328.2 bits (840), Expect = 1.2e-86
Identity = 158/210 (75.24%), Postives = 185/210 (88.10%), Query Frame = 1


Query: 18  CLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTINPSDIDLTLQQFREIYGQFPDVDRLK 77
           CLS +IDDGT ESHRYYLSR+T LEMLRDRGY+++P DIDL+L +FR IYG  PD DRL+
Sbjct: 17  CLSKFIDDGTVESHRYYLSRKTTLEMLRDRGYSVSPQDIDLSLSEFRNIYGPSPDTDRLR 76

Query: 78  LSAAHRADPSKRILVIFCGTGAVKVSAIRNIAGQIVNKETLHGLILIVQNQITNQAMKAV 137
           LS  H ++PSKR+LVIFCGTG VKVS +RNI+GQIVN+ETL GLILIVQN IT+QA+KAV
Sbjct: 77  LSLPHASNPSKRVLVIFCGTGVVKVSDVRNISGQIVNRETLTGLILIVQNNITSQALKAV 136

Query: 138 EVFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLEQYSIEEKQLPRMLRTDAIA 197
             FSFKVEIFQITDLLVNITKH LKP HQVLT+ +K+ LL++Y+IEEKQLPRML+TDAIA
Sbjct: 137 NSFSFKVEIFQITDLLVNITKHVLKPKHQVLTDRQKKNLLKKYNIEEKQLPRMLQTDAIA 196

Query: 198 RYYRLEKGQIVKVTYDGDMTRSHVTYRCVW 228
           RYY LEKGQ+VKVTY G++T+ HVTYRCVW
Sbjct: 197 RYYGLEKGQVVKVTYSGEITQMHVTYRCVW 226

[Close]

BLAST of CmaCh06G000010 vs. NCBI nr
Match: gi|255576548|ref|XP_002529165.1| (PREDICTED: DNA-directed RNA polymerase V subunit 5A [Ricinus communis])

HSP 1 Score: 327.0 bits (837), Expect = 2.6e-86
Identity = 161/217 (74.19%), Postives = 186/217 (85.71%), Query Frame = 1


Query: 11  NRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTINPSDIDLTLQQFREIYGQF 70
           N   LG C SSY DDGT E+HRYYLSRRTVLEMLRDRGY++  S+IDL+LQ+FR I+G  
Sbjct: 22  NMEGLGKCFSSYADDGTHETHRYYLSRRTVLEMLRDRGYSVPSSEIDLSLQEFRAIHGPN 81

Query: 71  PDVDRLKLSAAHRADPSKRILVIFCGTGAVKVSAIRNIAGQIVNKETLHGLILIVQNQIT 130
           PD+DRLK SA H +DPSKR+LV+F G G +KVS IR IAGQIVNK++L GLIL++QNQIT
Sbjct: 82  PDIDRLKFSATHTSDPSKRMLVLFGGPGIIKVSTIRAIAGQIVNKDSLTGLILVLQNQIT 141

Query: 131 NQAMKAVEVFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLEQYSIEEKQLPRM 190
           NQAMKAV++F FKVE+FQITDLLVNITKH LKP HQVLT+ EKQKLL+ Y IEEKQLPR+
Sbjct: 142 NQAMKAVDLFKFKVEMFQITDLLVNITKHVLKPKHQVLTDREKQKLLKDYCIEEKQLPRL 201

Query: 191 LRTDAIARYYRLEKGQIVKVTYDGDMTRSHVTYRCVW 228
           LR DAIARYY LEKGQ+VKVTY G++T SHVTYRCVW
Sbjct: 202 LRKDAIARYYGLEKGQVVKVTYSGEITESHVTYRCVW 238

The following BLAST results are available for this feature:

BLAST of CmaCh06G000010 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RPE5A_ARATH	2.0e-75	62.86	DNA-directed RNA polymerase V subunit 5A OS=Arabidopsis thaliana GN=NRPE5A PE=1 ...	[more]
RPD5B_ARATH	9.8e-70	60.78	DNA-directed RNA polymerases IV and V subunit 5B OS=Arabidopsis thaliana GN=NRPD...	[more]
RPE5C_ARATH	2.3e-50	45.45	DNA-directed RNA polymerase V subunit 5C OS=Arabidopsis thaliana GN=NRPE5C PE=2 ...	[more]
RPB5A_ARATH	7.6e-30	39.00	DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana GN=NRP...	[more]
RPAB1_CAEBR	4.2e-28	33.01	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis bri...	[more]

BLAST of CmaCh06G000010 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCG9_CUCSA	1.8e-110	87.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G822200 PE=4 SV=1	[more]
A0A061EW60_THECC	1.6e-87	72.37	Eukaryotic rpb5 RNA polymerase subunit family protein isoform 1 OS=Theobroma cac...	[more]
A0A151RUY1_CAJCA	8.1e-87	75.24	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Cajanus cajan GN=K...	[more]
B9ST46_RICCO	1.8e-86	74.19	DNA-directed RNA polymerase II, putative OS=Ricinus communis GN=RCOM_0248850 PE=...	[more]
A0A067K1X8_JATCU	9.9e-85	73.71	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22486 PE=4 SV=1	[more]

BLAST of CmaCh06G000010 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G57080.1	1.2e-76	62.86	Eukaryotic rpb5 RNA polymerase subunit family protein	[more]
AT2G41340.1	5.5e-71	60.78	RNA polymerase II fifth largest subunit, D	[more]
AT3G54490.1	1.3e-51	45.45	RNA polymerase II fifth largest subunit, E	[more]
AT3G22320.1	4.3e-31	39.00	Eukaryotic rpb5 RNA polymerase subunit family protein	[more]
AT5G57980.1	5.4e-26	34.78	RNA polymerase II fifth largest subunit, C	[more]

BLAST of CmaCh06G000010 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449437743\|ref\|XP_004136650.1\|	2.6e-110	87.67	PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Cucumis sativus]	[more]
gi\|659085180\|ref\|XP_008443287.1\|	5.7e-110	87.67	PREDICTED: DNA-directed RNA polymerase V subunit 5A [Cucumis melo]	[more]
gi\|590635085\|ref\|XP_007028544.1\|	2.3e-87	72.37	Eukaryotic rpb5 RNA polymerase subunit family protein isoform 1 [Theobroma cacao...	[more]
gi\|1012335000\|gb\|KYP46343.1\|	1.2e-86	75.24	DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Cajanus cajan]	[more]
gi\|255576548\|ref\|XP_002529165.1\|	2.6e-86	74.19	PREDICTED: DNA-directed RNA polymerase V subunit 5A [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000783	RNA_pol_subH/Rpb5_C
IPR005571	RNA_pol_Rpb5_N
IPR014381	DNA_RNA_pol_RPB5_euk/virus

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003899	DNA-directed RNA polymerase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005736	DNA-directed RNA polymerase I complex
cellular_component	GO:0005665	DNA-directed RNA polymerase II, core complex
cellular_component	GO:0005666	DNA-directed RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity
molecular_function	GO:0001054	RNA polymerase I activity
molecular_function	GO:0001055	RNA polymerase II activity
molecular_function	GO:0001056	RNA polymerase III activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G000010.1	CmaCh06G000010.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	PRODOM	PD005155		coord: 161..226 score: 1.0
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	GENE3D	G3DSA:3.90.940.20		coord: 155..227 score: 1.1
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	PFAM	PF01191	RNA_pol_Rpb5_C	coord: 154..226 score: 5.9
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	unknown	SSF55287	RPB5-like RNA polymerase subunit	coord: 152..227 score: 1.31
IPR005571	RNA polymerase, Rpb5, N-terminal	GENE3D	G3DSA:3.40.1340.10		coord: 24..154 score: 4.0
IPR005571	RNA polymerase, Rpb5, N-terminal	PFAM	PF03871	RNA_pol_Rpb5_N	coord: 28..111 score: 1.6
IPR005571	RNA polymerase, Rpb5, N-terminal	unknown	SSF53036	Eukaryotic RPB5 N-terminal domain	coord: 28..155 score: 7.32
IPR014381	DNA-directed RNA polymerase RPB5 subunit, eukaryote/virus	PIR	PIRSF000747	RPB5	coord: 22..227 score: 1.3
None	No IPR available	PANTHER	PTHR10535	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1	coord: 25..227 score: 1.3E
None	No IPR available	PANTHER	PTHR10535:SF2	DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A-RELATED	coord: 25..227 score: 1.3E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh06G000010	Cucsa.337960	Cucumber (Gy14) v1	cgycmaB0943
CmaCh06G000010	Cla002896	Watermelon (97103) v1	cmawmB781
CmaCh06G000010	Csa3G822200	Cucumber (Chinese Long) v2	cmacuB826
CmaCh06G000010	MELO3C009776	Melon (DHL92) v3.5.1	cmameB752
CmaCh06G000010	ClCG10G016030	Watermelon (Charleston Gray)	cmawcgB720
CmaCh06G000010	CSPI03G38030	Wild cucumber (PI 183967)	cmacpiB839
CmaCh06G000010	CmoCh06G000010	Cucurbita moschata (Rifu)	cmacmoB829
CmaCh06G000010	Lsi03G015910	Bottle gourd (USVL1VR-Ls)	cmalsiB751
CmaCh06G000010	Cp4.1LG08g13260	Cucurbita pepo (Zucchini)	cmacpeB846
CmaCh06G000010	MELO3C009776.2	Melon (DHL92) v3.6.1	cmamedB852
CmaCh06G000010	CsaV3_3G040420	Cucumber (Chinese Long) v3	cmacucB0976
CmaCh06G000010	Cla97C10G198910	Watermelon (97103) v2	cmawmbB838
CmaCh06G000010	Bhi11G002357	Wax gourd	cmawgoB0987
CmaCh06G000010	CsGy3G035510	Cucumber (Gy14) v2	cgybcmaB439

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None