CsGy3G022330 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G022330
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr3 : 20738229 .. 20738760 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGCAACGAGAAAAAGAGGCGAGGAAAGCCTTTGAGCAGGGTGTGTATGATGAGTACACTCATGCTTGCCACAAATTCTCTGAAAAAGTGAAAAATGTTAGAACAATGGCAGGGAAAAAGAAAAGTTGGCGAAGATTCAAGATGCCAGGAAAAGAAAGGAGGAAAGGAAGAAAGAGATGCTCGTAACGATAGATGAGCGAGTGGAAAAATTGTCGATAAAAAACAAGGCCATAAGGGAGCAAGGGGTTGAACGCTTAGAAATTGGGACAGAAGAACTGGATGAAGAATTGGAGACGATGAGCCCCACCTTGAAGGAAGGCTATCACCTGAATACGAGGAAATGAAAGTCGTCGGCACTAGCCATTCAAAGACACTTAAGACAGGGTCATCCAGACTTGAAGAGACCCAAGCTGACAGTGAAAAGGGAAATTCAATTGACAAAGAGGTCAAAGTGGAAAAAGACCTATTTTCCTTCAACGAAACCCTCTCAAATTGTCTCTTTGCACTAATTAAGTCATTCAACTAG

mRNA sequence

ATGGAGAAGCAACGAGAAAAAGAGGCGAGGAAAGCCTTTGAGCAGGGTGTGTATGATGAGTACACTCATGCTTGCCACAAATTCTCTGAAAAAGTGAAAAATGTTAGAACAATGGCAGGGAAAAAGAAAAGTTGGCGAAGATTCAAGATGCCAGGAAAAGAAAGGAGGAAAGGAAGAAAGAGATGCTCAATTGGAGACGATGAGCCCCACCTTGAAGGAAGGCTATCACCTGAATACGAGGAAATGAAAGTCGTCGGCACTAGCCATTCAAAGACACTTAAGACAGGGTCATCCAGACTTGAAGAGACCCAAGCTGACAGTGAAAAGGGAAATTCAATTGACAAAGAGGTCAAAGTGGAAAAAGACCTATTTTCCTTCAACGAAACCCTCTCAAATTGTCTCTTTGCACTAATTAAGTCATTCAACTAG

Coding sequence (CDS)

ATGGAGAAGCAACGAGAAAAAGAGGCGAGGAAAGCCTTTGAGCAGGGTGTGTATGATGAGTACACTCATGCTTGCCACAAATTCTCTGAAAAAGTGAAAAATGTTAGAACAATGGCAGGGAAAAAGAAAAGTTGGCGAAGATTCAAGATGCCAGGAAAAGAAAGGAGGAAAGGAAGAAAGAGATGCTCAATTGGAGACGATGAGCCCCACCTTGAAGGAAGGCTATCACCTGAATACGAGGAAATGAAAGTCGTCGGCACTAGCCATTCAAAGACACTTAAGACAGGGTCATCCAGACTTGAAGAGACCCAAGCTGACAGTGAAAAGGGAAATTCAATTGACAAAGAGGTCAAAGTGGAAAAAGACCTATTTTCCTTCAACGAAACCCTCTCAAATTGTCTCTTTGCACTAATTAAGTCATTCAACTAG

Protein sequence

MEKQREKEARKAFEQGVYDEYTHACHKFSEKVKNVRTMAGKKKSWRRFKMPGKERRKGRKRCSIGDDEPHLEGRLSPEYEEMKVVGTSHSKTLKTGSSRLEETQADSEKGNSIDKEVKVEKDLFSFNETLSNCLFALIKSFN

Homology

[Close]

BLAST of CsGy3G022330 vs. NCBI nr
Match: KGN57984.1 (hypothetical protein Csa_3G418750 [Cucumis sativus])

HSP 1 Score: 228.8 bits (582), Expect = 1.2e-56
Identity = 117/118 (99.15%), Postives = 117/118 (99.15%), Query Frame = 0


Query: 1   MEKQREKEARKAFEQGVYDEYTHACHKFSEKVKNVRTMAGKKKSWRRFKMPGKERRKGRK 60
           MEKQREKEARKAFEQGVYDEYTHACHKFSEKVKNVRTMAGKKKSWRRFKMPGKERRKGRK
Sbjct: 1   MEKQREKEARKAFEQGVYDEYTHACHKFSEKVKNVRTMAGKKKSWRRFKMPGKERRKGRK 60

Query: 61  RCSIGDDEPHLEGRLSPEYEEMKVVGTSHSKTLKTGSSRLEETQADSEKGNSIDKEVK 119
           RCSIGDDEPHLEGRLSPEYEEMKVVGTSHSKTLKTGSSRLEETQADSEKGNSIDKE K
Sbjct: 61  RCSIGDDEPHLEGRLSPEYEEMKVVGTSHSKTLKTGSSRLEETQADSEKGNSIDKERK 118

[Close]

BLAST of CsGy3G022330 vs. TrEMBL
Match: tr|A0A0A0LAL7|A0A0A0LAL7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G418750 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 7.7e-57
Identity = 117/118 (99.15%), Postives = 117/118 (99.15%), Query Frame = 0


Query: 1   MEKQREKEARKAFEQGVYDEYTHACHKFSEKVKNVRTMAGKKKSWRRFKMPGKERRKGRK 60
           MEKQREKEARKAFEQGVYDEYTHACHKFSEKVKNVRTMAGKKKSWRRFKMPGKERRKGRK
Sbjct: 1   MEKQREKEARKAFEQGVYDEYTHACHKFSEKVKNVRTMAGKKKSWRRFKMPGKERRKGRK 60

Query: 61  RCSIGDDEPHLEGRLSPEYEEMKVVGTSHSKTLKTGSSRLEETQADSEKGNSIDKEVK 119
           RCSIGDDEPHLEGRLSPEYEEMKVVGTSHSKTLKTGSSRLEETQADSEKGNSIDKE K
Sbjct: 61  RCSIGDDEPHLEGRLSPEYEEMKVVGTSHSKTLKTGSSRLEETQADSEKGNSIDKERK 118

The following BLAST results are available for this feature:

BLAST of CsGy3G022330 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57984.1	1.2e-56	99.15	hypothetical protein Csa_3G418750 [Cucumis sativus]	[more]

BLAST of CsGy3G022330 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy3G022330 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy3G022330 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LAL7\|A0A0A0LAL7_CUCSA	7.7e-57	99.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G418750 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G022330.1	CsGy3G022330.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..87

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G022330	Csa3G418750	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G022330	CSPI03G23310	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G022330	CsaV3_3G023090	Cucumber (Chinese Long) v3	cgybcucB117

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G022330	Cucurbita maxima (Rimu)	cgybcmaB286
CsGy3G022330	Cucurbita maxima (Rimu)	cgybcmaB370
CsGy3G022330	Cucurbita moschata (Rifu)	cgybcmoB259
CsGy3G022330	Cucurbita moschata (Rifu)	cgybcmoB341
CsGy3G022330	Cucurbita pepo (Zucchini)	cgybcpeB382
CsGy3G022330	Cucurbita pepo (Zucchini)	cgybcpeB437
CsGy3G022330	Bottle gourd (USVL1VR-Ls)	cgyblsiB178
CsGy3G022330	Bottle gourd (USVL1VR-Ls)	cgyblsiB180
CsGy3G022330	Melon (DHL92) v3.5.1	cgybmeB175
CsGy3G022330	Melon (DHL92) v3.6.1	cgybmedB175
CsGy3G022330	Watermelon (Charleston Gray)	cgybwcgB210
CsGy3G022330	Watermelon (Charleston Gray)	cgybwcgB218
CsGy3G022330	Watermelon (97103) v1	cgybwmB234
CsGy3G022330	Silver-seed gourd	carcgybB0891
CsGy3G022330	Silver-seed gourd	carcgybB1001
CsGy3G022330	Watermelon (97103) v2	cgybwmbB203
CsGy3G022330	Watermelon (97103) v2	cgybwmbB210
CsGy3G022330	Wax gourd	cgybwgoB333
CsGy3G022330	Wax gourd	cgybwgoB336