CSPI03G23310 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G23310
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 20151244 .. 20151942 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAATCGTCGGCACTAGCCATGCAAAGAAACTTAAGACAGGGTCATCCAGACTTGAAGAGACCCAAGCTGACAGTGAAAAGGGAAATTCAATTGACAAAGAGGTCAAAGTGGAAAAAGACCTATTTTCCTTCAACGAAACCCTCTCAAATTGTCTCTTTGCACTAATTAAGTCATTCAACTAGAGGAAGTTTTTCACTGGGGCCACAAAGATCAGAATGGATGTAGTCCACAAGTTTTATGACATGAAGTTTCATCAATTTGATCTATTCGTCACAATTGATGGCAAAAAGACTTACTTCAGTGCAAAGGTCATAAATGAGTTGTATGGCTTGCCTAGAGACGCAGAATACCTGGGGCAAGCCATAATTACAAAACTGATAAAGGGGTTGGCCAAGGAAGAGTTGAAAGTGATAGCATGGCTAGGCACAAAATGGGAAGTGGCCCCAATGGGGAGATTTCAGTTATACCCACATCAACTAACTATTGACGCGAATGTGTGGTTGTTCTTCATAAAGAAAAAGATCGTCCCCACACGATATGACAGTACAATTTCAGTGGACTATGCGATGAATTATTTTTACTACATTATGACAAAAAAAAGGCAATCAACTGGAGCAAATTCATTAAAACTGTCATCCTCACATGAATGGAAACTTCAAAAGGAGCCATGTCCTTCCCTTCAATTAGAGGTGTAA

mRNA sequence

ATGAAAATCGTCGGCACTAGCCATGCAAAGAAACTTAAGACAGGGTCATCCAGACTTGAAGAGACCCAAGCTGACAGTGAAAAGGGAAATTCAATTGACAAAGAGAGGAAGTTTTTCACTGGGGCCACAAAGATCAGAATGGATGTAGTCCACAAGTTTTATGACATGAAGTTTCATCAATTTGATCTATTCGTCACAATTGATGGCAAAAAGACTTACTTCAGTGCAAAGGTCATAAATGAGTTGTATGGCTTGCCTAGAGACGCAGAATACCTGGGGCAAGCCATAATTACAAAACTGATAAAGGGGTTGGCCAAGGAAGAGTTGAAAGTGATAGCATGGCTAGGCACAAAATGGGAAGTGGCCCCAATGGGGAGATTTCAGTTATACCCACATCAACTAACTATTGACGCGAATGTGTGGTTGTTCTTCATAAAGAAAAAGATCGTCCCCACACGATATGACAGTACAATTTCAGTGGACTATGCGATGAATTATTTTTACTACATTATGACAAAAAAAAGGCAATCAACTGGAGCAAATTCATTAAAACTGTCATCCTCACATGAATGGAAACTTCAAAAGGAGCCATGTCCTTCCCTTCAATTAGAGGTGTAA

Coding sequence (CDS)

ATGAAAATCGTCGGCACTAGCCATGCAAAGAAACTTAAGACAGGGTCATCCAGACTTGAAGAGACCCAAGCTGACAGTGAAAAGGGAAATTCAATTGACAAAGAGAGGAAGTTTTTCACTGGGGCCACAAAGATCAGAATGGATGTAGTCCACAAGTTTTATGACATGAAGTTTCATCAATTTGATCTATTCGTCACAATTGATGGCAAAAAGACTTACTTCAGTGCAAAGGTCATAAATGAGTTGTATGGCTTGCCTAGAGACGCAGAATACCTGGGGCAAGCCATAATTACAAAACTGATAAAGGGGTTGGCCAAGGAAGAGTTGAAAGTGATAGCATGGCTAGGCACAAAATGGGAAGTGGCCCCAATGGGGAGATTTCAGTTATACCCACATCAACTAACTATTGACGCGAATGTGTGGTTGTTCTTCATAAAGAAAAAGATCGTCCCCACACGATATGACAGTACAATTTCAGTGGACTATGCGATGAATTATTTTTACTACATTATGACAAAAAAAAGGCAATCAACTGGAGCAAATTCATTAAAACTGTCATCCTCACATGAATGGAAACTTCAAAAGGAGCCATGTCCTTCCCTTCAATTAGAGGTGTAA
Homology
[Close]
BLAST of CSPI03G23310 vs. TrEMBL
Match: A0A0A0LAL7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G418750 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 9.3e-50
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 1 

Query: 1   MKIVGTSHAKKLKTGSSRLEETQADSEKGNSIDKERKFFTGATKIRMDVVHKFYDMKFHQ 60
           MK+VGTSH+K LKTGSSRLEETQADSEKGNSIDKERKFFTGATKIRMDVVHKFYDMKFHQ
Sbjct: 82  MKVVGTSHSKTLKTGSSRLEETQADSEKGNSIDKERKFFTGATKIRMDVVHKFYDMKFHQ 141

Query: 61  FDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKGLAK 107
           FDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKGLAK
Sbjct: 142 FDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKGLAK 187

[Close]
BLAST of CSPI03G23310 vs. TrEMBL
Match: A0A0A0L2P0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G569710 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.8e-08
Identity = 26/56 (46.43%), Postives = 39/56 (69.64%), Query Frame = 1 

Query: 109 LKVIAWLGTKWEVAPMGRFQLYPHQLTIDANVWLFFIKKKIVPTRYDSTISVDYAM 165
           LK + W  T  ++ P G++QL PH L  +A +WL F+KKKI+PTR+D+ IS++  M
Sbjct: 22  LKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKKKIMPTRHDNNISMERVM 77

[Close]
BLAST of CSPI03G23310 vs. NCBI nr
Match: gi|700202851|gb|KGN57984.1| (hypothetical protein Csa_3G418750 [Cucumis sativus])

HSP 1 Score: 204.9 bits (520), Expect = 1.3e-49
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 1 

Query: 1   MKIVGTSHAKKLKTGSSRLEETQADSEKGNSIDKERKFFTGATKIRMDVVHKFYDMKFHQ 60
           MK+VGTSH+K LKTGSSRLEETQADSEKGNSIDKERKFFTGATKIRMDVVHKFYDMKFHQ
Sbjct: 82  MKVVGTSHSKTLKTGSSRLEETQADSEKGNSIDKERKFFTGATKIRMDVVHKFYDMKFHQ 141

Query: 61  FDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKGLAK 107
           FDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKGLAK
Sbjct: 142 FDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKGLAK 187

[Close]
BLAST of CSPI03G23310 vs. NCBI nr
Match: gi|700199714|gb|KGN54872.1| (hypothetical protein Csa_4G569710 [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 1.3e-07
Identity = 26/56 (46.43%), Postives = 39/56 (69.64%), Query Frame = 1 

Query: 109 LKVIAWLGTKWEVAPMGRFQLYPHQLTIDANVWLFFIKKKIVPTRYDSTISVDYAM 165
           LK + W  T  ++ P G++QL PH L  +A +WL F+KKKI+PTR+D+ IS++  M
Sbjct: 22  LKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKKKIMPTRHDNNISMERVM 77

The following BLAST results are available for this feature:
BLAST of CSPI03G23310 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G23310 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAL7_CUCSA9.3e-5097.17Uncharacterized protein OS=Cucumis sativus GN=Csa_3G418750 PE=4 SV=1[more]
A0A0A0L2P0_CUCSA8.8e-0846.43Uncharacterized protein OS=Cucumis sativus GN=Csa_4G569710 PE=4 SV=1[more]
BLAST of CSPI03G23310 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G23310 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202851|gb|KGN57984.1|1.3e-4997.17hypothetical protein Csa_3G418750 [Cucumis sativus][more]
gi|700199714|gb|KGN54872.1|1.3e-0746.43hypothetical protein Csa_4G569710 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G23310.1CSPI03G23310.1mRNA