CsGy3G022200 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G022200
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr3 : 20581396 .. 20581788 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATCAGAGGCTCAAACTCTGGTTGGCAACGTATTCATTAGATGTTCCTACTTTTATCAATGATGAACAGCCTACTGACAAGGAGACAGGAACATCCGTTAGTGACAACCCCAAATATGGTATCATATCGATCGACGTACCATCAAGGGGCGAGGATGTGCGACCACTACCTCCCCAACCCATGCTAGAGCCGAAGGATGAGGTAAATGATTTCAAATTTTGCATTCCTTTATATAGTGACTTTAGTAATAATAAAACTAACTAATAAACTGAATTGCAAATTGTGCAGTCTATTGAGTTTGATGTGGAGGTCATCTCACCTTTAGTTTTTCCAGATGTCATACTTAAGGAAAGGACGACAAGGAAGAGAGGTATACCCTGGAAATTGTGA

mRNA sequence

ATGCATCAGAGGCTCAAACTCTGGTTGGCAACGTATTCATTAGATGTTCCTACTTTTATCAATGATGAACAGCCTACTGACAAGGAGACAGGAACATCCGTTAGTGACAACCCCAAATATGGTATCATATCGATCGACGTACCATCAAGGGGCGAGGATGTGCGACCACTACCTCCCCAACCCATGCTAGAGCCGAAGGATGAGTCTATTGAGTTTGATGTGGAGGTCATCTCACCTTTAGTTTTTCCAGATGTCATACTTAAGGAAAGGACGACAAGGAAGAGAGGTATACCCTGGAAATTGTGA

Coding sequence (CDS)

ATGCATCAGAGGCTCAAACTCTGGTTGGCAACGTATTCATTAGATGTTCCTACTTTTATCAATGATGAACAGCCTACTGACAAGGAGACAGGAACATCCGTTAGTGACAACCCCAAATATGGTATCATATCGATCGACGTACCATCAAGGGGCGAGGATGTGCGACCACTACCTCCCCAACCCATGCTAGAGCCGAAGGATGAGTCTATTGAGTTTGATGTGGAGGTCATCTCACCTTTAGTTTTTCCAGATGTCATACTTAAGGAAAGGACGACAAGGAAGAGAGGTATACCCTGGAAATTGTGA

Protein sequence

MHQRLKLWLATYSLDVPTFINDEQPTDKETGTSVSDNPKYGIISIDVPSRGEDVRPLPPQPMLEPKDESIEFDVEVISPLVFPDVILKERTTRKRGIPWKL

Homology

[Close]

BLAST of CsGy3G022200 vs. NCBI nr
Match: KGN57968.1 (hypothetical protein Csa_3G415130 [Cucumis sativus])

HSP 1 Score: 209.5 bits (532), Expect = 5.2e-51
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MHQRLKLWLATYSLDVPTFINDEQPTDKETGTSVSDNPKYGIISIDVPSRGEDVRPLPPQ 60
           MHQRLKLWLATYSLDVPTFINDEQPTDKETGTSVSDNPKYGIISIDVPSRGEDVRPLPPQ
Sbjct: 9   MHQRLKLWLATYSLDVPTFINDEQPTDKETGTSVSDNPKYGIISIDVPSRGEDVRPLPPQ 68

Query: 61  PMLEPKDESIEFDVEVISPLVFPDVILKERTTRKRGIPWKL 102
           PMLEPKDESIEFDVEVISPLVFPDVILKERTTRKRGIPWKL
Sbjct: 69  PMLEPKDESIEFDVEVISPLVFPDVILKERTTRKRGIPWKL 109

[Close]

BLAST of CsGy3G022200 vs. NCBI nr
Match: KGN49555.1 (hypothetical protein Csa_5G001020 [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 3.8e-09
Identity = 44/86 (51.16%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 14  LDVPTFINDEQPTDKETGTSVSDNPKYGIISIDVPSRGEDVRPLPP-----QPMLEPKDE 73
           +DV T   D++  D+ET TSVSDNPK GII IDVPS+GED+ PLPP        LE KDE
Sbjct: 233 VDVFTSTIDDKLVDEETRTSVSDNPKDGIIPIDVPSKGEDMPPLPPXXXXXXXXLESKDE 292

Query: 74  SIEFDVEVISPLVFPDVILKERTTRK 95
                     PLVF DV+ K+  T+K
Sbjct: 293 ----------PLVFSDVVPKKGITKK 308

[Close]

BLAST of CsGy3G022200 vs. TrEMBL
Match: tr|A0A0A0L860|A0A0A0L860_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G415130 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 3.4e-51
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MHQRLKLWLATYSLDVPTFINDEQPTDKETGTSVSDNPKYGIISIDVPSRGEDVRPLPPQ 60
           MHQRLKLWLATYSLDVPTFINDEQPTDKETGTSVSDNPKYGIISIDVPSRGEDVRPLPPQ
Sbjct: 9   MHQRLKLWLATYSLDVPTFINDEQPTDKETGTSVSDNPKYGIISIDVPSRGEDVRPLPPQ 68

Query: 61  PMLEPKDESIEFDVEVISPLVFPDVILKERTTRKRGIPWKL 102
           PMLEPKDESIEFDVEVISPLVFPDVILKERTTRKRGIPWKL
Sbjct: 69  PMLEPKDESIEFDVEVISPLVFPDVILKERTTRKRGIPWKL 109

[Close]

BLAST of CsGy3G022200 vs. TrEMBL
Match: tr|A0A0A0KIM1|A0A0A0KIM1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G001020 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.5e-09
Identity = 44/86 (51.16%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 14  LDVPTFINDEQPTDKETGTSVSDNPKYGIISIDVPSRGEDVRPLPP-----QPMLEPKDE 73
           +DV T   D++  D+ET TSVSDNPK GII IDVPS+GED+ PLPP        LE KDE
Sbjct: 233 VDVFTSTIDDKLVDEETRTSVSDNPKDGIIPIDVPSKGEDMPPLPPXXXXXXXXLESKDE 292

Query: 74  SIEFDVEVISPLVFPDVILKERTTRK 95
                     PLVF DV+ K+  T+K
Sbjct: 293 ----------PLVFSDVVPKKGITKK 308

The following BLAST results are available for this feature:

BLAST of CsGy3G022200 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57968.1	5.2e-51	100.00	hypothetical protein Csa_3G415130 [Cucumis sativus]	[more]
KGN49555.1	3.8e-09	51.16	hypothetical protein Csa_5G001020 [Cucumis sativus]	[more]

BLAST of CsGy3G022200 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy3G022200 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy3G022200 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L860\|A0A0A0L860_CUCSA	3.4e-51	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G415130 PE=4 SV=1	[more]
tr\|A0A0A0KIM1\|A0A0A0KIM1_CUCSA	2.5e-09	51.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G001020 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G022200.1	CsGy3G022200.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G022200	Csa3G415130	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G022200	CSPI03G23200	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G022200	CsaV3_3G022900	Cucumber (Chinese Long) v3	cgybcucB117

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G022200	Watermelon (97103) v2	cgybwmbB210
CsGy3G022200	Wax gourd	cgybwgoB336
CsGy3G022200	Cucurbita maxima (Rimu)	cgybcmaB286
CsGy3G022200	Cucurbita maxima (Rimu)	cgybcmaB370
CsGy3G022200	Cucurbita moschata (Rifu)	cgybcmoB259
CsGy3G022200	Cucurbita moschata (Rifu)	cgybcmoB341
CsGy3G022200	Cucurbita pepo (Zucchini)	cgybcpeB382
CsGy3G022200	Cucurbita pepo (Zucchini)	cgybcpeB437
CsGy3G022200	Bottle gourd (USVL1VR-Ls)	cgyblsiB180
CsGy3G022200	Melon (DHL92) v3.5.1	cgybmeB175
CsGy3G022200	Melon (DHL92) v3.6.1	cgybmedB175
CsGy3G022200	Watermelon (Charleston Gray)	cgybwcgB218
CsGy3G022200	Watermelon (97103) v1	cgybwmB234
CsGy3G022200	Silver-seed gourd	carcgybB0891
CsGy3G022200	Silver-seed gourd	carcgybB1001