CSPI03G23200 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G23200
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 19996687 .. 19997103 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGTGAGAGTACGTCCTTCAATGCATCAGAGGCTCAAACTCTGGTTGGCAACGTATTCATTAGATGTTCCTACTTTTATCAATGATGAACAGCCTACTGACAAGGAGACAGGAACATCCGTTAGTGACAACCCCAAATATGGTATCATATCGATCGACGTACCATCAAGGGGCGAGGATGTGCGACCACTACCTCCCCAACCCATGCTAGAGCCGAAGGATGAGGTAAATGATTTCAAATTTTGCATTCCTTTATATAGTGACTTTAGTAATAATAAAACTAACTAATAAACTGAATTGCAAATTGTGCAGTCTATTGAGTTTGATGTGGAGGTCATCTCACCTTTAGTTTTTCCAGATGTCATACTTAAGGAAAGGACGACAAGGAAGAGAGGTATACCCTGGAAATTGTGA

mRNA sequence

ATGGTGGTGAGAGTACGTCCTTCAATGCATCAGAGGCTCAAACTCTGGTTGGCAACGTATTCATTAGATGTTCCTACTTTTATCAATGATGAACAGCCTACTGACAAGGAGACAGGAACATCCGTTAGTGACAACCCCAAATATGGTATCATATCGATCGACGTACCATCAAGGGGCGAGGATGTGCGACCACTACCTCCCCAACCCATGCTAGAGCCGAAGGATGAGTCTATTGAGTTTGATGTGGAGGTCATCTCACCTTTAGTTTTTCCAGATGTCATACTTAAGGAAAGGACGACAAGGAAGAGAGGTATACCCTGGAAATTGTGA

Coding sequence (CDS)

ATGGTGGTGAGAGTACGTCCTTCAATGCATCAGAGGCTCAAACTCTGGTTGGCAACGTATTCATTAGATGTTCCTACTTTTATCAATGATGAACAGCCTACTGACAAGGAGACAGGAACATCCGTTAGTGACAACCCCAAATATGGTATCATATCGATCGACGTACCATCAAGGGGCGAGGATGTGCGACCACTACCTCCCCAACCCATGCTAGAGCCGAAGGATGAGTCTATTGAGTTTGATGTGGAGGTCATCTCACCTTTAGTTTTTCCAGATGTCATACTTAAGGAAAGGACGACAAGGAAGAGAGGTATACCCTGGAAATTGTGA
Homology
[Close]
BLAST of CSPI03G23200 vs. TrEMBL
Match: A0A0A0L860_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G415130 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 7.9e-56
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1 

Query: 1   MVVRVRPSMHQRLKLWLATYSLDVPTFINDEQPTDKETGTSVSDNPKYGIISIDVPSRGE 60
           MVVRVRPSMHQRLKLWLATYSLDVPTFINDEQPTDKETGTSVSDNPKYGIISIDVPSRGE
Sbjct: 1   MVVRVRPSMHQRLKLWLATYSLDVPTFINDEQPTDKETGTSVSDNPKYGIISIDVPSRGE 60

Query: 61  DVRPLPPQPMLEPKDESIEFDVEVISPLVFPDVILKERTTRKRGIPWKL 110
           DVRPLPPQPMLEPKDESIEFDVEVISPLVFPDVILKERTTRKRGIPWKL
Sbjct: 61  DVRPLPPQPMLEPKDESIEFDVEVISPLVFPDVILKERTTRKRGIPWKL 109

[Close]
BLAST of CSPI03G23200 vs. TrEMBL
Match: A0A0A0KIM1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G001020 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 5.4e-12
Identity = 46/86 (53.49%), Postives = 57/86 (66.28%), Query Frame = 1 

Query: 22  LDVPTFINDEQPTDKETGTSVSDNPKYGIISIDVPSRGEDV-----RPLPPQPMLEPKDE 81
           +DV T   D++  D+ET TSVSDNPK GII IDVPS+GED+     +PLPPQP+LE KDE
Sbjct: 233 VDVFTSTIDDKLVDEETRTSVSDNPKDGIIPIDVPSKGEDMPPLPPQPLPPQPLLESKDE 292

Query: 82  SIEFDVEVISPLVFPDVILKERTTRK 103
                     PLVF DV+ K+  T+K
Sbjct: 293 ----------PLVFSDVVPKKGITKK 308

[Close]
BLAST of CSPI03G23200 vs. NCBI nr
Match: gi|700202835|gb|KGN57968.1| (hypothetical protein Csa_3G415130 [Cucumis sativus])

HSP 1 Score: 224.2 bits (570), Expect = 1.1e-55
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1 

Query: 1   MVVRVRPSMHQRLKLWLATYSLDVPTFINDEQPTDKETGTSVSDNPKYGIISIDVPSRGE 60
           MVVRVRPSMHQRLKLWLATYSLDVPTFINDEQPTDKETGTSVSDNPKYGIISIDVPSRGE
Sbjct: 1   MVVRVRPSMHQRLKLWLATYSLDVPTFINDEQPTDKETGTSVSDNPKYGIISIDVPSRGE 60

Query: 61  DVRPLPPQPMLEPKDESIEFDVEVISPLVFPDVILKERTTRKRGIPWKL 110
           DVRPLPPQPMLEPKDESIEFDVEVISPLVFPDVILKERTTRKRGIPWKL
Sbjct: 61  DVRPLPPQPMLEPKDESIEFDVEVISPLVFPDVILKERTTRKRGIPWKL 109

[Close]
BLAST of CSPI03G23200 vs. NCBI nr
Match: gi|700194378|gb|KGN49555.1| (hypothetical protein Csa_5G001020 [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 7.7e-12
Identity = 46/86 (53.49%), Postives = 57/86 (66.28%), Query Frame = 1 

Query: 22  LDVPTFINDEQPTDKETGTSVSDNPKYGIISIDVPSRGEDV-----RPLPPQPMLEPKDE 81
           +DV T   D++  D+ET TSVSDNPK GII IDVPS+GED+     +PLPPQP+LE KDE
Sbjct: 233 VDVFTSTIDDKLVDEETRTSVSDNPKDGIIPIDVPSKGEDMPPLPPQPLPPQPLLESKDE 292

Query: 82  SIEFDVEVISPLVFPDVILKERTTRK 103
                     PLVF DV+ K+  T+K
Sbjct: 293 ----------PLVFSDVVPKKGITKK 308

The following BLAST results are available for this feature:
BLAST of CSPI03G23200 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G23200 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L860_CUCSA7.9e-56100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G415130 PE=4 SV=1[more]
A0A0A0KIM1_CUCSA5.4e-1253.49Uncharacterized protein OS=Cucumis sativus GN=Csa_5G001020 PE=4 SV=1[more]
BLAST of CSPI03G23200 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G23200 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202835|gb|KGN57968.1|1.1e-55100.00hypothetical protein Csa_3G415130 [Cucumis sativus][more]
gi|700194378|gb|KGN49555.1|7.7e-1253.49hypothetical protein Csa_5G001020 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G23200.1CSPI03G23200.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G23200Csa3G415130Cucumber (Chinese Long) v2cpicuB120
CSPI03G23200CsaV3_3G022900Cucumber (Chinese Long) v3cpicucB144
CSPI03G23200CsGy3G022200Cucumber (Gy14) v2cgybcpiB110
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G23200Watermelon (97103) v2cpiwmbB225
CSPI03G23200Wax gourdcpiwgoB351
CSPI03G23200Cucumber (Gy14) v1cgycpiB404
CSPI03G23200Cucurbita maxima (Rimu)cmacpiB015
CSPI03G23200Cucurbita maxima (Rimu)cmacpiB460
CSPI03G23200Cucurbita moschata (Rifu)cmocpiB006
CSPI03G23200Cucurbita moschata (Rifu)cmocpiB448
CSPI03G23200Melon (DHL92) v3.5.1cpimeB201
CSPI03G23200Watermelon (Charleston Gray)cpiwcgB242
CSPI03G23200Watermelon (97103) v1cpiwmB247
CSPI03G23200Cucurbita pepo (Zucchini)cpecpiB549
CSPI03G23200Cucurbita pepo (Zucchini)cpecpiB779
CSPI03G23200Bottle gourd (USVL1VR-Ls)cpilsiB194
CSPI03G23200Melon (DHL92) v3.6.1cpimedB195
CSPI03G23200Silver-seed gourdcarcpiB0939
CSPI03G23200Silver-seed gourdcarcpiB1053