CsGy3G020840 (gene) Cucumber (Gy14) v2

Overview
NameCsGy3G020840
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionHistone H3.2
LocationChr3 : 18264245 .. 18264568 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTCTTCAAGATTGGAATCTATGTTTAGTGTATGGTTGATTAGAATGAAGCATATATATTTTATTCTAAAGTTAAAATGAAGCACTAAGCTTCTGATCCGGAAGCTTCCGTTTCAACGTTTAGTTCGTGAAATTGCTCAGAATTTCAAAACCGACCTGAGGTTCCAGAGCAGTGTCGTCGCGACGCTTCAGGAAGCGGTCGAAGCCTATTTGGTTGGTTTGTTTGAGGATACGAATCTTTGTGCTATTTATGCTAAGAGGATAACCATTATGCCTGAGGATATTCAATTGGCAAGGAGGATTAGAGGGGAAAGGGCTTAG

mRNA sequence

ATGGTTTCTTCAAGATTGGAATCTATCACTAAGCTTCTGATCCGGAAGCTTCCGTTTCAACGTTTAGTTCGTGAAATTGCTCAGAATTTCAAAACCGACCTGAGGTTCCAGAGCAGTGTCGTCGCGACGCTTCAGGAAGCGGTCGAAGCCTATTTGGTTGGTTTGTTTGAGGATACGAATCTTTGTGCTATTTATGCTAAGAGGATAACCATTATGCCTGAGGATATTCAATTGGCAAGGAGGATTAGAGGGGAAAGGGCTTAG

Coding sequence (CDS)

ATGGTTTCTTCAAGATTGGAATCTATCACTAAGCTTCTGATCCGGAAGCTTCCGTTTCAACGTTTAGTTCGTGAAATTGCTCAGAATTTCAAAACCGACCTGAGGTTCCAGAGCAGTGTCGTCGCGACGCTTCAGGAAGCGGTCGAAGCCTATTTGGTTGGTTTGTTTGAGGATACGAATCTTTGTGCTATTTATGCTAAGAGGATAACCATTATGCCTGAGGATATTCAATTGGCAAGGAGGATTAGAGGGGAAAGGGCTTAG

Protein sequence

MVSSRLESITKLLIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIYAKRITIMPEDIQLARRIRGERA
Homology
[Close]
BLAST of CsGy3G020840 vs. NCBI nr
Match: KGN65378.1 (hypothetical protein Csa_1G392600 [Cucumis sativus])

HSP 1 Score: 156.4 bits (394), Expect = 4.5e-35
Identity = 85/91 (93.41%), Postives = 87/91 (95.60%), Query Frame = 0 

Query: 1  MVSSRLESI----TKLLIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLF 60
          MVSSRLES+    TKL+IRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLF
Sbjct: 1  MVSSRLESMFSVCTKLMIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLF 60

Query: 61 EDTNLCAIYAKRITIMPEDIQLARRIRGERA 88
          EDTNLCAIYAKRITIMPEDIQLARRIRGERA
Sbjct: 61 EDTNLCAIYAKRITIMPEDIQLARRIRGERA 91

[Close]
BLAST of CsGy3G020840 vs. NCBI nr
Match: P08903.2 (RecName: Full=Histone H3.2)

HSP 1 Score: 138.3 bits (347), Expect = 1.3e-29
Identity = 71/83 (85.54%), Postives = 77/83 (92.77%), Query Frame = 0 

Query: 5   RLESITKLLIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAI 64
           R +  T+LLIRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTNLCAI
Sbjct: 54  RYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAI 113

Query: 65  YAKRITIMPEDIQLARRIRGERA 88
           +AKR+TIMP+DIQLARRIRGERA
Sbjct: 114 HAKRVTIMPKDIQLARRIRGERA 136

[Close]
BLAST of CsGy3G020840 vs. NCBI nr
Match: prf||1202289A (histone H3)

HSP 1 Score: 138.3 bits (347), Expect = 1.3e-29
Identity = 71/83 (85.54%), Postives = 77/83 (92.77%), Query Frame = 0 

Query: 5   RLESITKLLIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAI 64
           R +  T+LLIRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTNLCAI
Sbjct: 53  RYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAI 112

Query: 65  YAKRITIMPEDIQLARRIRGERA 88
           +AKR+TIMP+DIQLARRIRGERA
Sbjct: 113 HAKRVTIMPKDIQLARRIRGERA 135

[Close]
BLAST of CsGy3G020840 vs. NCBI nr
Match: XP_006442699.1 (histone H3.2 [Citrus clementina] >ESR55939.1 hypothetical protein CICLE_v10024580mg [Citrus clementina])

HSP 1 Score: 137.9 bits (346), Expect = 1.7e-29
Identity = 70/78 (89.74%), Postives = 75/78 (96.15%), Query Frame = 0 

Query: 10  TKLLIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIYAKRI 69
           T+LLIRKLPFQRLVREIAQ+FKTDLRFQS  VATLQEA EAYLVGLFEDTNLCAI+AKR+
Sbjct: 59  TELLIRKLPFQRLVREIAQDFKTDLRFQSGAVATLQEAAEAYLVGLFEDTNLCAIHAKRV 118

Query: 70  TIMPEDIQLARRIRGERA 88
           TIMP+DIQLARRIRGERA
Sbjct: 119 TIMPKDIQLARRIRGERA 136

[Close]
BLAST of CsGy3G020840 vs. NCBI nr
Match: XP_003384122.1 (PREDICTED: histone H3-like [Amphimedon queenslandica] >XP_003384138.1 PREDICTED: histone H3-like [Amphimedon queenslandica])

HSP 1 Score: 137.5 bits (345), Expect = 2.2e-29
Identity = 71/83 (85.54%), Postives = 77/83 (92.77%), Query Frame = 0 

Query: 5   RLESITKLLIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAI 64
           R +  T+LLIRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTNLCAI
Sbjct: 54  RYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEASEAYLVGLFEDTNLCAI 113

Query: 65  YAKRITIMPEDIQLARRIRGERA 88
           +AKR+TIMP+DIQLARRIRGERA
Sbjct: 114 HAKRVTIMPKDIQLARRIRGERA 136

[Close]
BLAST of CsGy3G020840 vs. TAIR10
Match: AT1G09200.1 (Histone superfamily protein)

HSP 1 Score: 137.1 bits (344), Expect = 5.1e-33
Identity = 70/83 (84.34%), Postives = 77/83 (92.77%), Query Frame = 0 

Query: 5   RLESITKLLIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAI 64
           + +  T+LLIRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTNLCAI
Sbjct: 54  KYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAI 113

Query: 65  YAKRITIMPEDIQLARRIRGERA 88
           +AKR+TIMP+DIQLARRIRGERA
Sbjct: 114 HAKRVTIMPKDIQLARRIRGERA 136

[Close]
BLAST of CsGy3G020840 vs. TAIR10
Match: AT3G27360.1 (Histone superfamily protein)

HSP 1 Score: 137.1 bits (344), Expect = 5.1e-33
Identity = 70/83 (84.34%), Postives = 77/83 (92.77%), Query Frame = 0 

Query: 5   RLESITKLLIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAI 64
           + +  T+LLIRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTNLCAI
Sbjct: 54  KYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAI 113

Query: 65  YAKRITIMPEDIQLARRIRGERA 88
           +AKR+TIMP+DIQLARRIRGERA
Sbjct: 114 HAKRVTIMPKDIQLARRIRGERA 136

[Close]
BLAST of CsGy3G020840 vs. TAIR10
Match: AT5G10390.1 (Histone superfamily protein)

HSP 1 Score: 137.1 bits (344), Expect = 5.1e-33
Identity = 70/83 (84.34%), Postives = 77/83 (92.77%), Query Frame = 0 

Query: 5   RLESITKLLIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAI 64
           + +  T+LLIRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTNLCAI
Sbjct: 54  KYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAI 113

Query: 65  YAKRITIMPEDIQLARRIRGERA 88
           +AKR+TIMP+DIQLARRIRGERA
Sbjct: 114 HAKRVTIMPKDIQLARRIRGERA 136

[Close]
BLAST of CsGy3G020840 vs. TAIR10
Match: AT5G10400.1 (Histone superfamily protein)

HSP 1 Score: 137.1 bits (344), Expect = 5.1e-33
Identity = 70/83 (84.34%), Postives = 77/83 (92.77%), Query Frame = 0 

Query: 5   RLESITKLLIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAI 64
           + +  T+LLIRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTNLCAI
Sbjct: 54  KYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAI 113

Query: 65  YAKRITIMPEDIQLARRIRGERA 88
           +AKR+TIMP+DIQLARRIRGERA
Sbjct: 114 HAKRVTIMPKDIQLARRIRGERA 136

[Close]
BLAST of CsGy3G020840 vs. TAIR10
Match: AT5G65360.1 (Histone superfamily protein)

HSP 1 Score: 137.1 bits (344), Expect = 5.1e-33
Identity = 70/83 (84.34%), Postives = 77/83 (92.77%), Query Frame = 0 

Query: 5   RLESITKLLIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAI 64
           + +  T+LLIRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTNLCAI
Sbjct: 54  KYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAI 113

Query: 65  YAKRITIMPEDIQLARRIRGERA 88
           +AKR+TIMP+DIQLARRIRGERA
Sbjct: 114 HAKRVTIMPKDIQLARRIRGERA 136

[Close]
BLAST of CsGy3G020840 vs. Swiss-Prot
Match: sp|P08903|H32_ENCAL (Histone H3.2 OS=Encephalartos altensteinii OX=3300 PE=1 SV=2)

HSP 1 Score: 138.3 bits (347), Expect = 4.1e-32
Identity = 71/83 (85.54%), Postives = 77/83 (92.77%), Query Frame = 0 

Query: 5   RLESITKLLIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAI 64
           R +  T+LLIRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTNLCAI
Sbjct: 54  RYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAI 113

Query: 65  YAKRITIMPEDIQLARRIRGERA 88
           +AKR+TIMP+DIQLARRIRGERA
Sbjct: 114 HAKRVTIMPKDIQLARRIRGERA 136

[Close]
BLAST of CsGy3G020840 vs. Swiss-Prot
Match: sp|P59226|H32_ARATH (Histone H3.2 OS=Arabidopsis thaliana OX=3702 GN=HTR2 PE=1 SV=2)

HSP 1 Score: 137.1 bits (344), Expect = 9.2e-32
Identity = 70/83 (84.34%), Postives = 77/83 (92.77%), Query Frame = 0 

Query: 5   RLESITKLLIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAI 64
           + +  T+LLIRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTNLCAI
Sbjct: 54  KYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAI 113

Query: 65  YAKRITIMPEDIQLARRIRGERA 88
           +AKR+TIMP+DIQLARRIRGERA
Sbjct: 114 HAKRVTIMPKDIQLARRIRGERA 136

[Close]
BLAST of CsGy3G020840 vs. Swiss-Prot
Match: sp|Q6LBE3|H32_ASPOF (Histone H3.2 OS=Asparagus officinalis OX=4686 PE=2 SV=3)

HSP 1 Score: 137.1 bits (344), Expect = 9.2e-32
Identity = 70/83 (84.34%), Postives = 77/83 (92.77%), Query Frame = 0 

Query: 5   RLESITKLLIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAI 64
           + +  T+LLIRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTNLCAI
Sbjct: 54  KYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAI 113

Query: 65  YAKRITIMPEDIQLARRIRGERA 88
           +AKR+TIMP+DIQLARRIRGERA
Sbjct: 114 HAKRVTIMPKDIQLARRIRGERA 136

[Close]
BLAST of CsGy3G020840 vs. Swiss-Prot
Match: sp|Q6LCK1|H32_BRANA (Histone H3.2 OS=Brassica napus OX=3708 PE=2 SV=3)

HSP 1 Score: 137.1 bits (344), Expect = 9.2e-32
Identity = 70/83 (84.34%), Postives = 77/83 (92.77%), Query Frame = 0 

Query: 5   RLESITKLLIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAI 64
           + +  T+LLIRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTNLCAI
Sbjct: 54  KYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAI 113

Query: 65  YAKRITIMPEDIQLARRIRGERA 88
           +AKR+TIMP+DIQLARRIRGERA
Sbjct: 114 HAKRVTIMPKDIQLARRIRGERA 136

[Close]
BLAST of CsGy3G020840 vs. Swiss-Prot
Match: sp|Q71T45|H32_EUPES (Histone H3.2 OS=Euphorbia esula OX=3993 GN=H3 PE=2 SV=3)

HSP 1 Score: 137.1 bits (344), Expect = 9.2e-32
Identity = 70/83 (84.34%), Postives = 77/83 (92.77%), Query Frame = 0 

Query: 5   RLESITKLLIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAI 64
           + +  T+LLIRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTNLCAI
Sbjct: 54  KYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAI 113

Query: 65  YAKRITIMPEDIQLARRIRGERA 88
           +AKR+TIMP+DIQLARRIRGERA
Sbjct: 114 HAKRVTIMPKDIQLARRIRGERA 136

[Close]
BLAST of CsGy3G020840 vs. TrEMBL
Match: tr|A0A0A0LUA6|A0A0A0LUA6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G392600 PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 3.0e-35
Identity = 85/91 (93.41%), Postives = 87/91 (95.60%), Query Frame = 0 

Query: 1  MVSSRLESI----TKLLIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLF 60
          MVSSRLES+    TKL+IRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLF
Sbjct: 1  MVSSRLESMFSVCTKLMIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLF 60

Query: 61 EDTNLCAIYAKRITIMPEDIQLARRIRGERA 88
          EDTNLCAIYAKRITIMPEDIQLARRIRGERA
Sbjct: 61 EDTNLCAIYAKRITIMPEDIQLARRIRGERA 91

[Close]
BLAST of CsGy3G020840 vs. TrEMBL
Match: tr|V4VS74|V4VS74_9ROSI (Histone H3 OS=Citrus clementina OX=85681 GN=CICLE_v10024580mg PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.1e-29
Identity = 70/78 (89.74%), Postives = 75/78 (96.15%), Query Frame = 0 

Query: 10  TKLLIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIYAKRI 69
           T+LLIRKLPFQRLVREIAQ+FKTDLRFQS  VATLQEA EAYLVGLFEDTNLCAI+AKR+
Sbjct: 59  TELLIRKLPFQRLVREIAQDFKTDLRFQSGAVATLQEAAEAYLVGLFEDTNLCAIHAKRV 118

Query: 70  TIMPEDIQLARRIRGERA 88
           TIMP+DIQLARRIRGERA
Sbjct: 119 TIMPKDIQLARRIRGERA 136

[Close]
BLAST of CsGy3G020840 vs. TrEMBL
Match: tr|I1G9C5|I1G9C5_AMPQE (Histone H3 OS=Amphimedon queenslandica OX=400682 PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.4e-29
Identity = 71/83 (85.54%), Postives = 77/83 (92.77%), Query Frame = 0 

Query: 5   RLESITKLLIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAI 64
           R +  T+LLIRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTNLCAI
Sbjct: 54  RYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEASEAYLVGLFEDTNLCAI 113

Query: 65  YAKRITIMPEDIQLARRIRGERA 88
           +AKR+TIMP+DIQLARRIRGERA
Sbjct: 114 HAKRVTIMPKDIQLARRIRGERA 136

[Close]
BLAST of CsGy3G020840 vs. TrEMBL
Match: tr|U7E2D0|U7E2D0_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa OX=3694 GN=POPTR_0108s00230g PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.4e-29
Identity = 70/78 (89.74%), Postives = 75/78 (96.15%), Query Frame = 0 

Query: 10 TKLLIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIYAKRI 69
          T+LLIRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTNLCAI+AKR+
Sbjct: 7  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRV 66

Query: 70 TIMPEDIQLARRIRGERA 88
          TIMP+DIQLARRIRGERA
Sbjct: 67 TIMPKDIQLARRIRGERA 84

[Close]
BLAST of CsGy3G020840 vs. TrEMBL
Match: tr|A0A2K2BAD3|A0A2K2BAD3_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_003G208800v3 PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.4e-29
Identity = 70/78 (89.74%), Postives = 75/78 (96.15%), Query Frame = 0 

Query: 10 TKLLIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIYAKRI 69
          T+LLIRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTNLCAI+AKR+
Sbjct: 11 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRV 70

Query: 70 TIMPEDIQLARRIRGERA 88
          TIMP+DIQLARRIRGERA
Sbjct: 71 TIMPKDIQLARRIRGERA 88

The following BLAST results are available for this feature:
BLAST of CsGy3G020840 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65378.14.5e-3593.41hypothetical protein Csa_1G392600 [Cucumis sativus][more]
P08903.21.3e-2985.54RecName: Full=Histone H3.2[more]
prf||1202289A1.3e-2985.54histone H3[more]
XP_006442699.11.7e-2989.74histone H3.2 [Citrus clementina] >ESR55939.1 hypothetical protein CICLE_v1002458... [more]
XP_003384122.12.2e-2985.54PREDICTED: histone H3-like [Amphimedon queenslandica] >XP_003384138.1 PREDICTED:... [more]
BLAST of CsGy3G020840 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G09200.15.1e-3384.34Histone superfamily protein[more]
AT3G27360.15.1e-3384.34Histone superfamily protein[more]
AT5G10390.15.1e-3384.34Histone superfamily protein[more]
AT5G10400.15.1e-3384.34Histone superfamily protein[more]
AT5G65360.15.1e-3384.34Histone superfamily protein[more]
BLAST of CsGy3G020840 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P08903|H32_ENCAL4.1e-3285.54Histone H3.2 OS=Encephalartos altensteinii OX=3300 PE=1 SV=2[more]
sp|P59226|H32_ARATH9.2e-3284.34Histone H3.2 OS=Arabidopsis thaliana OX=3702 GN=HTR2 PE=1 SV=2[more]
sp|Q6LBE3|H32_ASPOF9.2e-3284.34Histone H3.2 OS=Asparagus officinalis OX=4686 PE=2 SV=3[more]
sp|Q6LCK1|H32_BRANA9.2e-3284.34Histone H3.2 OS=Brassica napus OX=3708 PE=2 SV=3[more]
sp|Q71T45|H32_EUPES9.2e-3284.34Histone H3.2 OS=Euphorbia esula OX=3993 GN=H3 PE=2 SV=3[more]
BLAST of CsGy3G020840 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LUA6|A0A0A0LUA6_CUCSA3.0e-3593.41Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G392600 PE=3 SV=1[more]
tr|V4VS74|V4VS74_9ROSI1.1e-2989.74Histone H3 OS=Citrus clementina OX=85681 GN=CICLE_v10024580mg PE=3 SV=1[more]
tr|I1G9C5|I1G9C5_AMPQE1.4e-2985.54Histone H3 OS=Amphimedon queenslandica OX=400682 PE=3 SV=1[more]
tr|U7E2D0|U7E2D0_POPTR1.4e-2989.74Uncharacterized protein (Fragment) OS=Populus trichocarpa OX=3694 GN=POPTR_0108s... [more]
tr|A0A2K2BAD3|A0A2K2BAD3_POPTR1.4e-2989.74Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_003G208800v3 PE=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR007125Histone_H2A/H2B/H3
IPR000164Histone_H3/CENP-A
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006334 nucleosome assembly
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
molecular_function GO:0031492 nucleosomal DNA binding
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G020840.1CsGy3G020840.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000164Histone H3/CENP-APRINTSPR00622HISTONEH3coord: 65..86
score: 81.62
coord: 49..65
score: 91.18
coord: 9..26
score: 87.44
coord: 31..49
score: 73.57
IPR000164Histone H3/CENP-ASMARTSM00428h35coord: 2..87
e-value: 1.7E-41
score: 153.9
IPR000164Histone H3/CENP-APANTHERPTHR11426HISTONE H3coord: 5..87
IPR000164Histone H3/CENP-APROSITEPS00959HISTONE_H3_2coord: 18..26
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 7..83
e-value: 6.9E-33
score: 113.7
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 9..87
e-value: 2.5E-43
score: 147.9
IPR009072Histone-foldSUPERFAMILYSSF47113Histone-foldcoord: 5..85
NoneNo IPR availablePANTHERPTHR11426:SF177SUBFAMILY NOT NAMEDcoord: 5..87

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy3G020840CSPI03G21650Wild cucumber (PI 183967)cgybcpiB110
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy3G020840Cucurbita maxima (Rimu)cgybcmaB308
CsGy3G020840Cucurbita maxima (Rimu)cgybcmaB368
CsGy3G020840Cucurbita moschata (Rifu)cgybcmoB281
CsGy3G020840Cucurbita moschata (Rifu)cgybcmoB339
CsGy3G020840Cucurbita pepo (Zucchini)cgybcpeB380
CsGy3G020840Cucurbita pepo (Zucchini)cgybcpeB397
CsGy3G020840Cucumber (Chinese Long) v2cgybcuB109
CsGy3G020840Bottle gourd (USVL1VR-Ls)cgyblsiB192
CsGy3G020840Bottle gourd (USVL1VR-Ls)cgyblsiB199
CsGy3G020840Melon (DHL92) v3.5.1cgybmeB212
CsGy3G020840Melon (DHL92) v3.6.1cgybmedB216
CsGy3G020840Watermelon (Charleston Gray)cgybwcgB217
CsGy3G020840Watermelon (97103) v1cgybwmB232
CsGy3G020840Silver-seed gourdcarcgybB0757
CsGy3G020840Cucumber (Chinese Long) v3cgybcucB117
CsGy3G020840Watermelon (97103) v2cgybwmbB209
CsGy3G020840Wax gourdcgybwgoB259
CsGy3G020840Wax gourdcgybwgoB281