CSPI03G21650 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G21650
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionHistone H3
LocationChr3 : 17936892 .. 17937119 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCCGGAAGCTTCCGTTTCAACGTTTAGTTCGTGAAATTGCTCAGAATTTCAAAACCGACCTGAGGTTCCAGAGCAGTGTCGTCGCGACGCTTCAGGAAGCGGTCGAAGCCTATTTGGTTGGTTTGTTTGAGGATACAAATCTTTGTGCTATTTATGCTAAGAGGATAACCATTATGCCTGAGGATATTCAATTGGCAAGGAGGATTAGAGGGGAAAGGGCTTAG

mRNA sequence

ATGATCCGGAAGCTTCCGTTTCAACGTTTAGTTCGTGAAATTGCTCAGAATTTCAAAACCGACCTGAGGTTCCAGAGCAGTGTCGTCGCGACGCTTCAGGAAGCGGTCGAAGCCTATTTGGTTGGTTTGTTTGAGGATACAAATCTTTGTGCTATTTATGCTAAGAGGATAACCATTATGCCTGAGGATATTCAATTGGCAAGGAGGATTAGAGGGGAAAGGGCTTAG

Coding sequence (CDS)

ATGATCCGGAAGCTTCCGTTTCAACGTTTAGTTCGTGAAATTGCTCAGAATTTCAAAACCGACCTGAGGTTCCAGAGCAGTGTCGTCGCGACGCTTCAGGAAGCGGTCGAAGCCTATTTGGTTGGTTTGTTTGAGGATACAAATCTTTGTGCTATTTATGCTAAGAGGATAACCATTATGCCTGAGGATATTCAATTGGCAAGGAGGATTAGAGGGGAAAGGGCTTAG
Homology
[Close]
BLAST of CSPI03G21650 vs. Swiss-Prot
Match: H32_EUPES (Histone H3.2 OS=Euphorbia esula GN=H3 PE=2 SV=3)

HSP 1 Score: 134.0 bits (336), Expect = 6.7e-31
Identity = 67/75 (89.33%), Postives = 72/75 (96.00%), Query Frame = 1 

Query: 1   MIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIYAKRITIM 60
           +IRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTNLCAI+AKR+TIM
Sbjct: 62  LIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIM 121

Query: 61  PEDIQLARRIRGERA 76
           P+DIQLARRIRGERA
Sbjct: 122 PKDIQLARRIRGERA 136

[Close]
BLAST of CSPI03G21650 vs. Swiss-Prot
Match: H32_ENCAL (Histone H3.2 OS=Encephalartos altensteinii PE=1 SV=2)

HSP 1 Score: 134.0 bits (336), Expect = 6.7e-31
Identity = 67/75 (89.33%), Postives = 72/75 (96.00%), Query Frame = 1 

Query: 1   MIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIYAKRITIM 60
           +IRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTNLCAI+AKR+TIM
Sbjct: 62  LIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIM 121

Query: 61  PEDIQLARRIRGERA 76
           P+DIQLARRIRGERA
Sbjct: 122 PKDIQLARRIRGERA 136

[Close]
BLAST of CSPI03G21650 vs. Swiss-Prot
Match: H32_ASPOF (Histone H3.2 OS=Asparagus officinalis PE=2 SV=3)

HSP 1 Score: 134.0 bits (336), Expect = 6.7e-31
Identity = 67/75 (89.33%), Postives = 72/75 (96.00%), Query Frame = 1 

Query: 1   MIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIYAKRITIM 60
           +IRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTNLCAI+AKR+TIM
Sbjct: 62  LIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIM 121

Query: 61  PEDIQLARRIRGERA 76
           P+DIQLARRIRGERA
Sbjct: 122 PKDIQLARRIRGERA 136

[Close]
BLAST of CSPI03G21650 vs. Swiss-Prot
Match: H32_ARATH (Histone H3.2 OS=Arabidopsis thaliana GN=HTR2 PE=1 SV=2)

HSP 1 Score: 134.0 bits (336), Expect = 6.7e-31
Identity = 67/75 (89.33%), Postives = 72/75 (96.00%), Query Frame = 1 

Query: 1   MIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIYAKRITIM 60
           +IRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTNLCAI+AKR+TIM
Sbjct: 62  LIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIM 121

Query: 61  PEDIQLARRIRGERA 76
           P+DIQLARRIRGERA
Sbjct: 122 PKDIQLARRIRGERA 136

[Close]
BLAST of CSPI03G21650 vs. Swiss-Prot
Match: H32_ORYSI (Histone H3.2 OS=Oryza sativa subsp. indica GN=OsI_019426 PE=2 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 6.7e-31
Identity = 67/75 (89.33%), Postives = 72/75 (96.00%), Query Frame = 1 

Query: 1   MIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIYAKRITIM 60
           +IRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTNLCAI+AKR+TIM
Sbjct: 62  LIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIM 121

Query: 61  PEDIQLARRIRGERA 76
           P+DIQLARRIRGERA
Sbjct: 122 PKDIQLARRIRGERA 136

[Close]
BLAST of CSPI03G21650 vs. TrEMBL
Match: A0A0A0LUA6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G392600 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.9e-32
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIYAKRITIM 60
          MIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIYAKRITIM
Sbjct: 17 MIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIYAKRITIM 76

Query: 61 PEDIQLARRIRGERA 76
          PEDIQLARRIRGERA
Sbjct: 77 PEDIQLARRIRGERA 91

[Close]
BLAST of CSPI03G21650 vs. TrEMBL
Match: V4VS74_9ROSI (Histone H3 OS=Citrus clementina GN=CICLE_v10024580mg PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 5.7e-29
Identity = 67/75 (89.33%), Postives = 72/75 (96.00%), Query Frame = 1 

Query: 1   MIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIYAKRITIM 60
           +IRKLPFQRLVREIAQ+FKTDLRFQS  VATLQEA EAYLVGLFEDTNLCAI+AKR+TIM
Sbjct: 62  LIRKLPFQRLVREIAQDFKTDLRFQSGAVATLQEAAEAYLVGLFEDTNLCAIHAKRVTIM 121

Query: 61  PEDIQLARRIRGERA 76
           P+DIQLARRIRGERA
Sbjct: 122 PKDIQLARRIRGERA 136

[Close]
BLAST of CSPI03G21650 vs. TrEMBL
Match: S8E2N0_9LAMI (Histone H3 OS=Genlisea aurea GN=M569_04854 PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 7.5e-29
Identity = 67/75 (89.33%), Postives = 72/75 (96.00%), Query Frame = 1 

Query: 1   MIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIYAKRITIM 60
           +IRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTNLCAI+AKR+TIM
Sbjct: 62  LIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIM 121

Query: 61  PEDIQLARRIRGERA 76
           P+DIQLARRIRGERA
Sbjct: 122 PKDIQLARRIRGERA 136

[Close]
BLAST of CSPI03G21650 vs. TrEMBL
Match: V4KSU7_EUTSA (Histone H3 OS=Eutrema salsugineum GN=EUTSA_v10005111mg PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 7.5e-29
Identity = 67/75 (89.33%), Postives = 72/75 (96.00%), Query Frame = 1 

Query: 1   MIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIYAKRITIM 60
           +IRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTNLCAI+AKR+TIM
Sbjct: 62  LIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIM 121

Query: 61  PEDIQLARRIRGERA 76
           P+DIQLARRIRGERA
Sbjct: 122 PKDIQLARRIRGERA 136

[Close]
BLAST of CSPI03G21650 vs. TrEMBL
Match: A0A096TZU4_MAIZE (Histone H3.2 OS=Zea mays GN=H3C4 PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 7.5e-29
Identity = 67/75 (89.33%), Postives = 72/75 (96.00%), Query Frame = 1 

Query: 1   MIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIYAKRITIM 60
           +IRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTNLCAI+AKR+TIM
Sbjct: 171 LIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIM 230

Query: 61  PEDIQLARRIRGERA 76
           P+DIQLARRIRGERA
Sbjct: 231 PKDIQLARRIRGERA 245

[Close]
BLAST of CSPI03G21650 vs. TAIR10
Match: AT1G09200.1 (AT1G09200.1 Histone superfamily protein)

HSP 1 Score: 134.0 bits (336), Expect = 3.8e-32
Identity = 67/75 (89.33%), Postives = 72/75 (96.00%), Query Frame = 1 

Query: 1   MIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIYAKRITIM 60
           +IRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTNLCAI+AKR+TIM
Sbjct: 62  LIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIM 121

Query: 61  PEDIQLARRIRGERA 76
           P+DIQLARRIRGERA
Sbjct: 122 PKDIQLARRIRGERA 136

[Close]
BLAST of CSPI03G21650 vs. TAIR10
Match: AT3G27360.1 (AT3G27360.1 Histone superfamily protein)

HSP 1 Score: 134.0 bits (336), Expect = 3.8e-32
Identity = 67/75 (89.33%), Postives = 72/75 (96.00%), Query Frame = 1 

Query: 1   MIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIYAKRITIM 60
           +IRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTNLCAI+AKR+TIM
Sbjct: 62  LIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIM 121

Query: 61  PEDIQLARRIRGERA 76
           P+DIQLARRIRGERA
Sbjct: 122 PKDIQLARRIRGERA 136

[Close]
BLAST of CSPI03G21650 vs. TAIR10
Match: AT5G10390.1 (AT5G10390.1 Histone superfamily protein)

HSP 1 Score: 134.0 bits (336), Expect = 3.8e-32
Identity = 67/75 (89.33%), Postives = 72/75 (96.00%), Query Frame = 1 

Query: 1   MIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIYAKRITIM 60
           +IRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTNLCAI+AKR+TIM
Sbjct: 62  LIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIM 121

Query: 61  PEDIQLARRIRGERA 76
           P+DIQLARRIRGERA
Sbjct: 122 PKDIQLARRIRGERA 136

[Close]
BLAST of CSPI03G21650 vs. TAIR10
Match: AT5G10400.1 (AT5G10400.1 Histone superfamily protein)

HSP 1 Score: 134.0 bits (336), Expect = 3.8e-32
Identity = 67/75 (89.33%), Postives = 72/75 (96.00%), Query Frame = 1 

Query: 1   MIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIYAKRITIM 60
           +IRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTNLCAI+AKR+TIM
Sbjct: 62  LIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIM 121

Query: 61  PEDIQLARRIRGERA 76
           P+DIQLARRIRGERA
Sbjct: 122 PKDIQLARRIRGERA 136

[Close]
BLAST of CSPI03G21650 vs. TAIR10
Match: AT5G65360.1 (AT5G65360.1 Histone superfamily protein)

HSP 1 Score: 134.0 bits (336), Expect = 3.8e-32
Identity = 67/75 (89.33%), Postives = 72/75 (96.00%), Query Frame = 1 

Query: 1   MIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIYAKRITIM 60
           +IRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTNLCAI+AKR+TIM
Sbjct: 62  LIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIM 121

Query: 61  PEDIQLARRIRGERA 76
           P+DIQLARRIRGERA
Sbjct: 122 PKDIQLARRIRGERA 136

[Close]
BLAST of CSPI03G21650 vs. NCBI nr
Match: gi|700210282|gb|KGN65378.1| (hypothetical protein Csa_1G392600 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 2.7e-32
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIYAKRITIM 60
          MIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIYAKRITIM
Sbjct: 17 MIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIYAKRITIM 76

Query: 61 PEDIQLARRIRGERA 76
          PEDIQLARRIRGERA
Sbjct: 77 PEDIQLARRIRGERA 91

[Close]
BLAST of CSPI03G21650 vs. NCBI nr
Match: gi|166384|gb|AAA32655.1| (histone H3 (H3-1.1) [Medicago sativa])

HSP 1 Score: 134.4 bits (337), Expect = 8.2e-29
Identity = 67/75 (89.33%), Postives = 73/75 (97.33%), Query Frame = 1 

Query: 1   MIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIYAKRITIM 60
           +IRKLPFQRLVREIAQ+FKTDLRFQSSVV+ LQEA EAYLVGLFEDTNLCAI+AKR+TIM
Sbjct: 62  LIRKLPFQRLVREIAQDFKTDLRFQSSVVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIM 121

Query: 61  PEDIQLARRIRGERA 76
           P+DIQLARRIRGERA
Sbjct: 122 PKDIQLARRIRGERA 136

[Close]
BLAST of CSPI03G21650 vs. NCBI nr
Match: gi|567900422|ref|XP_006442699.1| (hypothetical protein CICLE_v10024580mg [Citrus clementina])

HSP 1 Score: 134.4 bits (337), Expect = 8.2e-29
Identity = 67/75 (89.33%), Postives = 72/75 (96.00%), Query Frame = 1 

Query: 1   MIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIYAKRITIM 60
           +IRKLPFQRLVREIAQ+FKTDLRFQS  VATLQEA EAYLVGLFEDTNLCAI+AKR+TIM
Sbjct: 62  LIRKLPFQRLVREIAQDFKTDLRFQSGAVATLQEAAEAYLVGLFEDTNLCAIHAKRVTIM 121

Query: 61  PEDIQLARRIRGERA 76
           P+DIQLARRIRGERA
Sbjct: 122 PKDIQLARRIRGERA 136

[Close]
BLAST of CSPI03G21650 vs. NCBI nr
Match: gi|643697049|gb|KDP20192.1| (hypothetical protein JCGZ_07912 [Jatropha curcas])

HSP 1 Score: 134.0 bits (336), Expect = 1.1e-28
Identity = 67/75 (89.33%), Postives = 72/75 (96.00%), Query Frame = 1 

Query: 1   MIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIYAKRITIM 60
           +IRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTNLCAI+AKR+TIM
Sbjct: 152 LIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIM 211

Query: 61  PEDIQLARRIRGERA 76
           P+DIQLARRIRGERA
Sbjct: 212 PKDIQLARRIRGERA 226

[Close]
BLAST of CSPI03G21650 vs. NCBI nr
Match: gi|224865|prf||1202289A (histone H3)

HSP 1 Score: 134.0 bits (336), Expect = 1.1e-28
Identity = 67/75 (89.33%), Postives = 72/75 (96.00%), Query Frame = 1 

Query: 1   MIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIYAKRITIM 60
           +IRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTNLCAI+AKR+TIM
Sbjct: 61  LIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIM 120

Query: 61  PEDIQLARRIRGERA 76
           P+DIQLARRIRGERA
Sbjct: 121 PKDIQLARRIRGERA 135

The following BLAST results are available for this feature:
BLAST of CSPI03G21650 vs. Swiss-Prot
Match NameE-valueIdentityDescription
H32_EUPES6.7e-3189.33Histone H3.2 OS=Euphorbia esula GN=H3 PE=2 SV=3[more]
H32_ENCAL6.7e-3189.33Histone H3.2 OS=Encephalartos altensteinii PE=1 SV=2[more]
H32_ASPOF6.7e-3189.33Histone H3.2 OS=Asparagus officinalis PE=2 SV=3[more]
H32_ARATH6.7e-3189.33Histone H3.2 OS=Arabidopsis thaliana GN=HTR2 PE=1 SV=2[more]
H32_ORYSI6.7e-3189.33Histone H3.2 OS=Oryza sativa subsp. indica GN=OsI_019426 PE=2 SV=1[more]
BLAST of CSPI03G21650 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUA6_CUCSA1.9e-32100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G392600 PE=3 SV=1[more]
V4VS74_9ROSI5.7e-2989.33Histone H3 OS=Citrus clementina GN=CICLE_v10024580mg PE=3 SV=1[more]
S8E2N0_9LAMI7.5e-2989.33Histone H3 OS=Genlisea aurea GN=M569_04854 PE=3 SV=1[more]
V4KSU7_EUTSA7.5e-2989.33Histone H3 OS=Eutrema salsugineum GN=EUTSA_v10005111mg PE=3 SV=1[more]
A0A096TZU4_MAIZE7.5e-2989.33Histone H3.2 OS=Zea mays GN=H3C4 PE=3 SV=1[more]
BLAST of CSPI03G21650 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G09200.13.8e-3289.33 Histone superfamily protein[more]
AT3G27360.13.8e-3289.33 Histone superfamily protein[more]
AT5G10390.13.8e-3289.33 Histone superfamily protein[more]
AT5G10400.13.8e-3289.33 Histone superfamily protein[more]
AT5G65360.13.8e-3289.33 Histone superfamily protein[more]
BLAST of CSPI03G21650 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210282|gb|KGN65378.1|2.7e-32100.00hypothetical protein Csa_1G392600 [Cucumis sativus][more]
gi|166384|gb|AAA32655.1|8.2e-2989.33histone H3 (H3-1.1) [Medicago sativa][more]
gi|567900422|ref|XP_006442699.1|8.2e-2989.33hypothetical protein CICLE_v10024580mg [Citrus clementina][more]
gi|643697049|gb|KDP20192.1|1.1e-2889.33hypothetical protein JCGZ_07912 [Jatropha curcas][more]
gi|224865|prf||1202289A1.1e-2889.33histone H3[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000164Histone_H3/CENP-A
IPR007125Histone_H2A/H2B/H3
IPR009072Histone-fold
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006334 nucleosome assembly
biological_process GO:0008283 cell proliferation
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
cellular_component GO:0009536 plastid
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0031492 nucleosomal DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G21650.1CSPI03G21650.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000164Histone H3/CENP-APRINTSPR00622HISTONEH3coord: 19..37
score: 2.5E-30coord: 37..53
score: 2.5E-30coord: 53..74
score: 2.5
IPR000164Histone H3/CENP-APANTHERPTHR11426HISTONE H3coord: 2..75
score: 8.8
IPR000164Histone H3/CENP-ASMARTSM00428h35coord: 1..75
score: 8.6
IPR000164Histone H3/CENP-APROSITEPS00959HISTONE_H3_2coord: 6..14
scor
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 2..71
score: 3.8
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 1..75
score: 5.3
IPR009072Histone-foldunknownSSF47113Histone-foldcoord: 2..73
score: 2.74

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G21650Cucsa.375480Cucumber (Gy14) v1cgycpiB554
CSPI03G21650CsGy3G020840Cucumber (Gy14) v2cgybcpiB110
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G21650Cucurbita maxima (Rimu)cmacpiB244
CSPI03G21650Cucurbita maxima (Rimu)cmacpiB458
CSPI03G21650Cucurbita moschata (Rifu)cmocpiB232
CSPI03G21650Cucurbita moschata (Rifu)cmocpiB446
CSPI03G21650Cucumber (Chinese Long) v2cpicuB120
CSPI03G21650Melon (DHL92) v3.5.1cpimeB243
CSPI03G21650Watermelon (Charleston Gray)cpiwcgB240
CSPI03G21650Watermelon (97103) v1cpiwmB245
CSPI03G21650Cucurbita pepo (Zucchini)cpecpiB552
CSPI03G21650Cucurbita pepo (Zucchini)cpecpiB602
CSPI03G21650Bottle gourd (USVL1VR-Ls)cpilsiB210
CSPI03G21650Melon (DHL92) v3.6.1cpimedB240
CSPI03G21650Silver-seed gourdcarcpiB0798
CSPI03G21650Cucumber (Chinese Long) v3cpicucB144
CSPI03G21650Watermelon (97103) v2cpiwmbB224