CsGy3G019900 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G019900
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	transportin MOS14 isoform X2
Location	Chr3 : 16245229 .. 16245861 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAGCTCCAAAAACCAGGTTTTAAGTCTTTCATCATTTTTTCAAGAAAAAGCGTGTTAACACCTAAAATAGTACCCTGCCACCAACATGAAAGAATAGGGACACTGTAAGAATAGGATTGTTAACATCTTCACAACTAACTGGTTTTTAGATCCGTGGCTGCTGTTCTATGCATGAAATGAAATCGTGGCTCAGTTTAAAATTTATTTGCAAACAGAATTTTTAACTTTGTCATTTTAATTCTTAAAGGTGTAGACTTTTTTCCAGGTGCAGGCTCTCCCACTTGAATATTTAAAACCAGGGGAAGTTGAAAGTCTTGTCCCACTATGGTTAAAGGCTCTTGGAGATGCAGCCTGTGACTATCTTGAAAGTAAAAGTTGTGACGAAGTAAAGGCTAATTATGGACATATGCAAGGGAAGGGTGGAAGAGTCCTGAAGCGTCTAGTCCGTGAATTTGCTGATGGTCACCGCAATGTGACTTAATTGTTGCATGGCATTTATACATCATTAGAGGACCCCAGCTCTTTGCTTTTCTGCTTATGGCCTCTTCTGTTGTTGAGGTGCATTGGGCAGTTGAATGTTGAAGCTGGTTTGGAAACTTTGGTCAATATTGGGCAATTTCCTGCATAA

mRNA sequence

ATGAATAGCTCCAAAAACCAGGTGCAGGCTCTCCCACTTGAATATTTAAAACCAGGGGAAGTTGAAAGTCTTGTCCCACTATGGTTAAAGGCTCTTGGAGATGCAGCCTGTGACTATCTTGAAAGTAAAAGTTGTGACGAAGTAAAGGCTAATTATGGACATATGCAAGGGAAGGGTGGAAGAGTCCTGAAGCGTCTAGTCCGTGAATTTGCTGATGGTCACCGCAATTTGAATGTTGAAGCTGGTTTGGAAACTTTGGTCAATATTGGGCAATTTCCTGCATAA

Coding sequence (CDS)

ATGAATAGCTCCAAAAACCAGGTGCAGGCTCTCCCACTTGAATATTTAAAACCAGGGGAAGTTGAAAGTCTTGTCCCACTATGGTTAAAGGCTCTTGGAGATGCAGCCTGTGACTATCTTGAAAGTAAAAGTTGTGACGAAGTAAAGGCTAATTATGGACATATGCAAGGGAAGGGTGGAAGAGTCCTGAAGCGTCTAGTCCGTGAATTTGCTGATGGTCACCGCAATTTGAATGTTGAAGCTGGTTTGGAAACTTTGGTCAATATTGGGCAATTTCCTGCATAA

Protein sequence

MNSSKNQVQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQGKGGRVLKRLVREFADGHRNLNVEAGLETLVNIGQFPA

Homology

[Close]

BLAST of CsGy3G019900 vs. NCBI nr
Match: KGN57694.1 (hypothetical protein Csa_3G253510 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 2.9e-32
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 8   VQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQGKGGRVLKRLV 67
           VQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQGKGGRVLKRLV
Sbjct: 47  VQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQGKGGRVLKRLV 106

Query: 68  REFADGHRNL 78
           REFADGHRN+
Sbjct: 107 REFADGHRNV 116

[Close]

BLAST of CsGy3G019900 vs. NCBI nr
Match: XP_011651341.1 (PREDICTED: transportin-3 isoform X1 [Cucumis sativus] >XP_011651342.1 PREDICTED: transportin-3 isoform X1 [Cucumis sativus] >XP_011651343.1 PREDICTED: transportin-3 isoform X1 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 2.9e-32
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 8    VQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQGKGGRVLKRLV 67
            VQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQGKGGRVLKRLV
Sbjct: 943  VQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQGKGGRVLKRLV 1002

Query: 68   REFADGHRNL 78
            REFADGHRN+
Sbjct: 1003 REFADGHRNV 1012

[Close]

BLAST of CsGy3G019900 vs. NCBI nr
Match: XP_011651344.1 (PREDICTED: transportin-3 isoform X2 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 2.9e-32
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 8   VQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQGKGGRVLKRLV 67
           VQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQGKGGRVLKRLV
Sbjct: 789 VQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQGKGGRVLKRLV 848

Query: 68  REFADGHRNL 78
           REFADGHRN+
Sbjct: 849 REFADGHRNV 858

[Close]

BLAST of CsGy3G019900 vs. NCBI nr
Match: XP_022934436.1 (transportin-3 isoform X1 [Cucurbita moschata] >XP_022934437.1 transportin-3 isoform X1 [Cucurbita moschata])

HSP 1 Score: 143.7 bits (361), Expect = 3.3e-31
Identity = 66/70 (94.29%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 8    VQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQGKGGRVLKRLV 67
            VQALPLEYLKPGEVE+LVPLWLKALGDAACDYLESKSCDE+K NYGHMQGKGGRVLKRLV
Sbjct: 944  VQALPLEYLKPGEVETLVPLWLKALGDAACDYLESKSCDELKTNYGHMQGKGGRVLKRLV 1003

Query: 68   REFADGHRNL 78
            REFADGHRN+
Sbjct: 1004 REFADGHRNI 1013

[Close]

BLAST of CsGy3G019900 vs. NCBI nr
Match: XP_022934438.1 (transportin-3 isoform X2 [Cucurbita moschata])

HSP 1 Score: 143.7 bits (361), Expect = 3.3e-31
Identity = 66/70 (94.29%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 8   VQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQGKGGRVLKRLV 67
           VQALPLEYLKPGEVE+LVPLWLKALGDAACDYLESKSCDE+K NYGHMQGKGGRVLKRLV
Sbjct: 917 VQALPLEYLKPGEVETLVPLWLKALGDAACDYLESKSCDELKTNYGHMQGKGGRVLKRLV 976

Query: 68  REFADGHRNL 78
           REFADGHRN+
Sbjct: 977 REFADGHRNI 986

[Close]

BLAST of CsGy3G019900 vs. TAIR10
Match: AT1G12930.1 (ARM repeat superfamily protein)

HSP 1 Score: 88.6 bits (218), Expect = 2.3e-18
Identity = 45/71 (63.38%), Postives = 52/71 (73.24%), Query Frame = 0


Query: 8   VQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCD--EVKANYGHMQGKGGRVLKR 67
           V ALP EYLK GE ES+V  W +ALG A  DYLE+KSC+     ++ GHMQGK GR LKR
Sbjct: 928 VWALPSEYLKQGEAESIVREWSEALGGAGIDYLENKSCNFGSNNSSGGHMQGKHGRTLKR 987

Query: 68  LVREFADGHRN 77
           LVR+FAD HRN
Sbjct: 988 LVRDFADSHRN 998

[Close]

BLAST of CsGy3G019900 vs. TrEMBL
Match: tr|A0A0A0L9N1|A0A0A0L9N1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G253510 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.9e-32
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 8   VQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQGKGGRVLKRLV 67
           VQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQGKGGRVLKRLV
Sbjct: 47  VQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQGKGGRVLKRLV 106

Query: 68  REFADGHRNL 78
           REFADGHRN+
Sbjct: 107 REFADGHRNV 116

[Close]

BLAST of CsGy3G019900 vs. TrEMBL
Match: tr|A0A1S3BN70|A0A1S3BN70_CUCME (transportin-3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491690 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 9.0e-30
Identity = 66/70 (94.29%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 8    VQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQGKGGRVLKRLV 67
            VQALPLEYLKPGEVE+LVPLWLKALGDAACDYLESKSCDE +ANYGHMQGKGGRVLKRLV
Sbjct: 943  VQALPLEYLKPGEVETLVPLWLKALGDAACDYLESKSCDE-EANYGHMQGKGGRVLKRLV 1002

Query: 68   REFADGHRNL 78
            REFADGHRN+
Sbjct: 1003 REFADGHRNI 1011

[Close]

BLAST of CsGy3G019900 vs. TrEMBL
Match: tr|A0A1S3BNV6|A0A1S3BNV6_CUCME (transportin-3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491690 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 9.0e-30
Identity = 66/70 (94.29%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 8   VQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQGKGGRVLKRLV 67
           VQALPLEYLKPGEVE+LVPLWLKALGDAACDYLESKSCDE +ANYGHMQGKGGRVLKRLV
Sbjct: 789 VQALPLEYLKPGEVETLVPLWLKALGDAACDYLESKSCDE-EANYGHMQGKGGRVLKRLV 848

Query: 68  REFADGHRNL 78
           REFADGHRN+
Sbjct: 849 REFADGHRNI 857

[Close]

BLAST of CsGy3G019900 vs. TrEMBL
Match: tr|A0A1Q3CZH5|A0A1Q3CZH5_CEPFO (Xpo1 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_28977 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.5e-24
Identity = 56/73 (76.71%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 5    KNQVQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQGKGGRVLK 64
            ++ VQ LP EYLK GE ESL P+WLKAL  AA DY+ESKSCD  K+NYGHMQGKGGRVLK
Sbjct: 942  QSAVQTLPAEYLKQGEAESLAPVWLKALAGAASDYIESKSCDAGKSNYGHMQGKGGRVLK 1001

Query: 65   RLVREFADGHRNL 78
            RLVREFADGHRN+
Sbjct: 1002 RLVREFADGHRNV 1014

[Close]

BLAST of CsGy3G019900 vs. TrEMBL
Match: tr|A0A2I4EBP0|A0A2I4EBP0_9ROSI (transportin MOS14 isoform X1 OS=Juglans regia OX=51240 GN=LOC108988134 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.7e-23
Identity = 56/70 (80.00%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 8    VQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQGKGGRVLKRLV 67
            V ALP+EYL  GE ESLVP+WLKAL  AA DYLESKSCD  K NYGHMQGKGGRVLKRLV
Sbjct: 941  VHALPVEYLNQGEAESLVPVWLKALAGAASDYLESKSCDGGKNNYGHMQGKGGRVLKRLV 1000

Query: 68   REFADGHRNL 78
            REFAD HRN+
Sbjct: 1001 REFADNHRNV 1010

The following BLAST results are available for this feature:

BLAST of CsGy3G019900 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57694.1	2.9e-32	98.57	hypothetical protein Csa_3G253510 [Cucumis sativus]	[more]
XP_011651341.1	2.9e-32	98.57	PREDICTED: transportin-3 isoform X1 [Cucumis sativus] >XP_011651342.1 PREDICTED:...	[more]
XP_011651344.1	2.9e-32	98.57	PREDICTED: transportin-3 isoform X2 [Cucumis sativus]	[more]
XP_022934436.1	3.3e-31	94.29	transportin-3 isoform X1 [Cucurbita moschata] >XP_022934437.1 transportin-3 isof...	[more]
XP_022934438.1	3.3e-31	94.29	transportin-3 isoform X2 [Cucurbita moschata]	[more]

BLAST of CsGy3G019900 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G12930.1	2.3e-18	63.38	ARM repeat superfamily protein	[more]

BLAST of CsGy3G019900 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy3G019900 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L9N1\|A0A0A0L9N1_CUCSA	1.9e-32	98.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G253510 PE=4 SV=1	[more]
tr\|A0A1S3BN70\|A0A1S3BN70_CUCME	9.0e-30	94.29	transportin-3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491690 PE=4 SV=1	[more]
tr\|A0A1S3BNV6\|A0A1S3BNV6_CUCME	9.0e-30	94.29	transportin-3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491690 PE=4 SV=1	[more]
tr\|A0A1Q3CZH5\|A0A1Q3CZH5_CEPFO	1.5e-24	76.71	Xpo1 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_289...	[more]
tr\|A0A2I4EBP0\|A0A2I4EBP0_9ROSI	1.7e-23	80.00	transportin MOS14 isoform X1 OS=Juglans regia OX=51240 GN=LOC108988134 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G019900.1	CsGy3G019900.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G019900	Cla007146	Watermelon (97103) v1	cgybwmB233
CsGy3G019900	Csa3G253510	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G019900	MELO3C014748	Melon (DHL92) v3.5.1	cgybmeB212
CsGy3G019900	ClCG05G012390	Watermelon (Charleston Gray)	cgybwcgB217
CsGy3G019900	CSPI03G20100	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G019900	CmaCh14G007860	Cucurbita maxima (Rimu)	cgybcmaB308
CsGy3G019900	CmoCh14G007980	Cucurbita moschata (Rifu)	cgybcmoB281
CsGy3G019900	Lsi05G004200	Bottle gourd (USVL1VR-Ls)	cgyblsiB199
CsGy3G019900	Cp4.1LG03g06430	Cucurbita pepo (Zucchini)	cgybcpeB397
CsGy3G019900	MELO3C014745.2	Melon (DHL92) v3.6.1	cgybmedB208
CsGy3G019900	CsaV3_3G020140	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G019900	Bhi01G001385	Wax gourd	cgybwgoB278
CsGy3G019900	Carg22297	Silver-seed gourd	carcgybB0489

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G019900	Watermelon (97103) v2	cgybwmbB209