CsGy3G018520 (gene) Cucumber (Gy14) v2

Overview
NameCsGy3G018520
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionPantothenate synthetase
LocationChr3 : 14670247 .. 14670895 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCATGTTTCTTGCTGGTTTAGAGGATGAGACATCAGTGAGGGTTAAGCCTTTGGAGAAGGACATGTGTGGGAGAAGTAGACTTGCGTTCTTTATAGGGGTTGCTACTGTTGTTACTAAGTTGTTCAATACTGTGGAACTCGATGTTGCAGTGTTTGGAAAGAAGGATTATCAGGCGGATGGTGAGTCTTTGTAAGAATGTGAATGATTTTGATTTTCATACTTGTTTTGTGCTCAAAATTCATTGTTATTCATTTGAATTCCTAGCTTGATAACTTAATTCTATTATTTATGAATTTAATTTGCATCACTCTAGCCGGGGGCACCAATTAATTTTGAAAGAAGCCTCATGCTATCTAATATGGTATCAAATCCTTAAACTAAAATGAATATTCAACTCATTAAAAAAATTAAATTTTGATCCAATAATAGTGAATCCAAAAGGGTACTATCTTGAAAATGGTCCATAAAATAGTGCATAAATGAAGAAACAAATAAGAGATGAATCAAATGTCCATGTTTTCTCCATAGATTTTTTTCCTCATTTTTATTGCTTATATGTTACTTATGTATACCAGGTAGGAAATTTGGCTGCTCTAGTTGAAGATTGGACAACTAGTGGAAAGCAAGTATCAAACAACGCTTGA

mRNA sequence

ATGTCCATGTTTCTTGCTGGTTTAGAGGATGAGACATCAGTGAGGGTTAAGCCTTTGGAGAAGGACATGTGTGGGAGAAGTAGACTTGCGTTCTTTATAGGGGTTGCTACTGTTGTTACTAAGTTGTTCAATACTGTGGAACTCGATGTTGCAGTGTTTGGAAAGAAGGATTATCAGGCGGATGGAAATTTGGCTGCTCTAGTTGAAGATTGGACAACTAGTGGAAAGCAAGTATCAAACAACGCTTGA

Coding sequence (CDS)

ATGTCCATGTTTCTTGCTGGTTTAGAGGATGAGACATCAGTGAGGGTTAAGCCTTTGGAGAAGGACATGTGTGGGAGAAGTAGACTTGCGTTCTTTATAGGGGTTGCTACTGTTGTTACTAAGTTGTTCAATACTGTGGAACTCGATGTTGCAGTGTTTGGAAAGAAGGATTATCAGGCGGATGGAAATTTGGCTGCTCTAGTTGAAGATTGGACAACTAGTGGAAAGCAAGTATCAAACAACGCTTGA

Protein sequence

MSMFLAGLEDETSVRVKPLEKDMCGRSRLAFFIGVATVVTKLFNTVELDVAVFGKKDYQADGNLAALVEDWTTSGKQVSNNA
Homology
[Close]
BLAST of CsGy3G018520 vs. NCBI nr
Match: KGN43706.1 (hypothetical protein Csa_7G061730 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 2.9e-15
Identity = 46/54 (85.19%), Postives = 47/54 (87.04%), Query Frame = 0 

Query: 6  AGLEDETSVRVKPLEKDMCGRSRLAFFIGVATVVTKLFNTVELDVAVFGKKDYQ 60
          +G EDETSVRVK LEKDMC RSRL FF GVATVVTKLFN VELDVAVF KKDYQ
Sbjct: 24 SGSEDETSVRVKRLEKDMCWRSRLVFFRGVATVVTKLFNIVELDVAVFEKKDYQ 77

[Close]
BLAST of CsGy3G018520 vs. NCBI nr
Match: XP_022996300.1 (pantoate--beta-alanine ligase-like [Cucurbita maxima])

HSP 1 Score: 82.4 bits (202), Expect = 7.8e-13
Identity = 43/65 (66.15%), Postives = 48/65 (73.85%), Query Frame = 0 

Query: 6   AGLEDETSVRVKPLEKDMCGRSRLAFFIGVATVVTKLFNTVELDVAVFGKKDYQADGNLA 65
           +G E ET VRV+ LEK MCGRSR  FF GVAT+VTKLFN VE DVAVFGKKDYQ    + 
Sbjct: 134 SGSEHETWVRVERLEKGMCGRSRPVFFRGVATIVTKLFNVVEPDVAVFGKKDYQQWRVIR 193

Query: 66  ALVED 71
            +V D
Sbjct: 194 RMVRD 198

[Close]
BLAST of CsGy3G018520 vs. NCBI nr
Match: XP_022931128.1 (pantoate--beta-alanine ligase-like [Cucurbita moschata])

HSP 1 Score: 82.0 bits (201), Expect = 1.0e-12
Identity = 43/65 (66.15%), Postives = 48/65 (73.85%), Query Frame = 0 

Query: 6   AGLEDETSVRVKPLEKDMCGRSRLAFFIGVATVVTKLFNTVELDVAVFGKKDYQADGNLA 65
           +G E ET VRV+ LEK MCGRSR  FF GVAT+VTKLFN VE DVAVFGKKDYQ    + 
Sbjct: 134 SGSEHETWVRVERLEKGMCGRSRPVFFRGVATIVTKLFNIVEPDVAVFGKKDYQQWRVIR 193

Query: 66  ALVED 71
            +V D
Sbjct: 194 RMVRD 198

[Close]
BLAST of CsGy3G018520 vs. NCBI nr
Match: XP_022849488.1 (pantoate--beta-alanine ligase isoform X1 [Olea europaea var. sylvestris])

HSP 1 Score: 80.9 bits (198), Expect = 2.3e-12
Identity = 41/64 (64.06%), Postives = 48/64 (75.00%), Query Frame = 0 

Query: 7   GLEDETSVRVKPLEKDMCGRSRLAFFIGVATVVTKLFNTVELDVAVFGKKDYQADGNLAA 66
           G+  ET VRV+ LEKD+CG+SR  FF GVAT+VTKLFN VE DVAVFGKKDYQ    +  
Sbjct: 132 GMGHETWVRVERLEKDLCGKSRPVFFRGVATIVTKLFNIVEPDVAVFGKKDYQQWRIIKR 191

Query: 67  LVED 71
           +V D
Sbjct: 192 MVRD 195

[Close]
BLAST of CsGy3G018520 vs. NCBI nr
Match: XP_022849489.1 (pantoate--beta-alanine ligase isoform X2 [Olea europaea var. sylvestris])

HSP 1 Score: 80.9 bits (198), Expect = 2.3e-12
Identity = 41/64 (64.06%), Postives = 48/64 (75.00%), Query Frame = 0 

Query: 7   GLEDETSVRVKPLEKDMCGRSRLAFFIGVATVVTKLFNTVELDVAVFGKKDYQADGNLAA 66
           G+  ET VRV+ LEKD+CG+SR  FF GVAT+VTKLFN VE DVAVFGKKDYQ    +  
Sbjct: 132 GMGHETWVRVERLEKDLCGKSRPVFFRGVATIVTKLFNIVEPDVAVFGKKDYQQWRIIKR 191

Query: 67  LVED 71
           +V D
Sbjct: 192 MVRD 195

[Close]
BLAST of CsGy3G018520 vs. TAIR10
Match: AT5G48840.1 (homolog of bacterial PANC)

HSP 1 Score: 76.6 bits (187), Expect = 7.7e-15
Identity = 39/64 (60.94%), Postives = 46/64 (71.88%), Query Frame = 0 

Query: 7   GLEDETSVRVKPLEKDMCGRSRLAFFIGVATVVTKLFNTVELDVAVFGKKDYQADGNLAA 66
           GL  ET +RV+ LEK  CG+SR  FF GVAT+VTKLFN VE DVA+FGKKDYQ    +  
Sbjct: 128 GLGHETWIRVERLEKGFCGKSRPVFFRGVATIVTKLFNIVEPDVALFGKKDYQQWRIIQR 187

Query: 67  LVED 71
           +V D
Sbjct: 188 MVRD 191

[Close]
BLAST of CsGy3G018520 vs. Swiss-Prot
Match: sp|O24035|PANC_LOTJA (Pantoate--beta-alanine ligase OS=Lotus japonicus OX=34305 GN=PANC PE=1 SV=3)

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-13
Identity = 41/75 (54.67%), Postives = 50/75 (66.67%), Query Frame = 0 

Query: 6   AGLEDETSVRVKPLEKDMCGRSRLAFFIGVATVVTKLFNTVELDVAVFGKKDYQADGNLA 65
           +G   ET VR + LEK +CG+SR  FF GVAT+VTKLFN VE DVAVFGKKDYQ    + 
Sbjct: 127 SGFGHETWVRAEKLEKPLCGKSRPVFFRGVATIVTKLFNIVEPDVAVFGKKDYQQWKIIQ 186

Query: 66  ALVEDWTTSGKQVSN 81
            +V D   S K + +
Sbjct: 187 RMVRDLDFSIKVIGS 201

[Close]
BLAST of CsGy3G018520 vs. Swiss-Prot
Match: sp|Q9FKB3|PANC_ARATH (Pantoate--beta-alanine ligase OS=Arabidopsis thaliana OX=3702 GN=At5g48840 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.4e-13
Identity = 39/64 (60.94%), Postives = 46/64 (71.88%), Query Frame = 0 

Query: 7   GLEDETSVRVKPLEKDMCGRSRLAFFIGVATVVTKLFNTVELDVAVFGKKDYQADGNLAA 66
           GL  ET +RV+ LEK  CG+SR  FF GVAT+VTKLFN VE DVA+FGKKDYQ    +  
Sbjct: 128 GLGHETWIRVERLEKGFCGKSRPVFFRGVATIVTKLFNIVEPDVALFGKKDYQQWRIIQR 187

Query: 67  LVED 71
           +V D
Sbjct: 188 MVRD 191

[Close]
BLAST of CsGy3G018520 vs. Swiss-Prot
Match: sp|O24210|PANC_ORYSJ (Pantoate--beta-alanine ligase OS=Oryza sativa subsp. japonica OX=39947 GN=PANC PE=2 SV=2)

HSP 1 Score: 75.9 bits (185), Expect = 2.4e-13
Identity = 40/65 (61.54%), Postives = 46/65 (70.77%), Query Frame = 0 

Query: 6   AGLEDETSVRVKPLEKDMCGRSRLAFFIGVATVVTKLFNTVELDVAVFGKKDYQADGNLA 65
           AG   ET VRV+ LEK MCG SR  FF GVAT+V+KLFN +E DVAVFGKKDYQ    + 
Sbjct: 130 AGDGHETWVRVERLEKGMCGASRPVFFRGVATIVSKLFNIIEPDVAVFGKKDYQQWRVIC 189

Query: 66  ALVED 71
            +V D
Sbjct: 190 RMVRD 194

[Close]
BLAST of CsGy3G018520 vs. Swiss-Prot
Match: sp|A4XYC5|PANC_PSEMY (Pantothenate synthetase OS=Pseudomonas mendocina (strain ymp) OX=399739 GN=panC PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 7.7e-12
Identity = 36/68 (52.94%), Postives = 47/68 (69.12%), Query Frame = 0 

Query: 3   MFLAGLEDETSVRVKPLEKDMCGRSRLAFFIGVATVVTKLFNTVELDVAVFGKKDYQADG 62
           M+  G+ D+T V V  + + +CG SR   F GVATVVTKLFN V+ D+AVFG+KDYQ   
Sbjct: 98  MYPHGMGDQTRVTVPGVSEGLCGASRPGHFEGVATVVTKLFNMVQPDLAVFGEKDYQQLA 157

Query: 63  NLAALVED 71
            + ALV+D
Sbjct: 158 VIRALVQD 165

[Close]
BLAST of CsGy3G018520 vs. Swiss-Prot
Match: sp|Q4K5Y3|PANC_PSEF5 (Pantothenate synthetase OS=Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5) OX=220664 GN=panC PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.5e-11
Identity = 35/68 (51.47%), Postives = 45/68 (66.18%), Query Frame = 0 

Query: 3   MFLAGLEDETSVRVKPLEKDMCGRSRLAFFIGVATVVTKLFNTVELDVAVFGKKDYQADG 62
           M+  G+  +T V V  L + +CG SR   F GVATVV+KLFN V+ D+AVFG+KDYQ   
Sbjct: 98  MYPDGMAGQTRVSVPQLSEGLCGASRPGHFEGVATVVSKLFNMVQPDLAVFGQKDYQQLA 157

Query: 63  NLAALVED 71
            + ALV D
Sbjct: 158 VIRALVHD 165

[Close]
BLAST of CsGy3G018520 vs. TrEMBL
Match: tr|A0A0A0K7A9|A0A0A0K7A9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G061730 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.9e-15
Identity = 46/54 (85.19%), Postives = 47/54 (87.04%), Query Frame = 0 

Query: 6  AGLEDETSVRVKPLEKDMCGRSRLAFFIGVATVVTKLFNTVELDVAVFGKKDYQ 60
          +G EDETSVRVK LEKDMC RSRL FF GVATVVTKLFN VELDVAVF KKDYQ
Sbjct: 24 SGSEDETSVRVKRLEKDMCWRSRLVFFRGVATVVTKLFNIVELDVAVFEKKDYQ 77

[Close]
BLAST of CsGy3G018520 vs. TrEMBL
Match: tr|A0A2P4JMU1|A0A2P4JMU1_QUESU (Pantoate--beta-alanine ligase OS=Quercus suber OX=58331 GN=CFP56_41846 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.0e-12
Identity = 43/64 (67.19%), Postives = 47/64 (73.44%), Query Frame = 0 

Query: 7   GLEDETSVRVKPLEKDMCGRSRLAFFIGVATVVTKLFNTVELDVAVFGKKDYQADGNLAA 66
           GL  ET VRV+ LEK MCG+SR  FF GVATVVTKLFN VE DVAVFGKKDYQ    +  
Sbjct: 146 GLGHETWVRVERLEKGMCGKSRPVFFRGVATVVTKLFNIVEPDVAVFGKKDYQQWRIIQR 205

Query: 67  LVED 71
           +V D
Sbjct: 206 MVRD 209

[Close]
BLAST of CsGy3G018520 vs. TrEMBL
Match: tr|A0A2I4EQE2|A0A2I4EQE2_9ROSI (pantoate--beta-alanine ligase OS=Juglans regia OX=51240 GN=LOC108991706 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.3e-12
Identity = 43/64 (67.19%), Postives = 47/64 (73.44%), Query Frame = 0 

Query: 7   GLEDETSVRVKPLEKDMCGRSRLAFFIGVATVVTKLFNTVELDVAVFGKKDYQADGNLAA 66
           GL  ET VRV+ LEK MCG+SR  FF GVATVVTKLFN VE DVAVFGKKDYQ    +  
Sbjct: 147 GLGHETWVRVERLEKVMCGKSRPVFFRGVATVVTKLFNIVEPDVAVFGKKDYQQWRIIQR 206

Query: 67  LVED 71
           +V D
Sbjct: 207 MVRD 210

[Close]
BLAST of CsGy3G018520 vs. TrEMBL
Match: tr|A0A164Z4E3|A0A164Z4E3_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018553 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.4e-12
Identity = 43/75 (57.33%), Postives = 52/75 (69.33%), Query Frame = 0 

Query: 7   GLEDETSVRVKPLEKDMCGRSRLAFFIGVATVVTKLFNTVELDVAVFGKKDYQADGNLAA 66
           GL  ET VRV+ LEK +CG+SR  FF GVAT+VTKLFN VE DVAVFGKKDYQ    +  
Sbjct: 117 GLGHETWVRVERLEKGLCGKSRPIFFRGVATIVTKLFNIVEPDVAVFGKKDYQQWRIITR 176

Query: 67  LVEDWTTSGKQVSNN 82
           +V D   S K + ++
Sbjct: 177 MVRDLDFSIKIIGSD 191

[Close]
BLAST of CsGy3G018520 vs. TrEMBL
Match: tr|A0A1J3IQV3|A0A1J3IQV3_NOCCA (Pantoate--beta-alanine ligase (Fragment) OS=Noccaea caerulescens OX=107243 GN=MP_TR8862_c0_g1_i1_g.27667 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.7e-12
Identity = 41/64 (64.06%), Postives = 47/64 (73.44%), Query Frame = 0 

Query: 7   GLEDETSVRVKPLEKDMCGRSRLAFFIGVATVVTKLFNTVELDVAVFGKKDYQADGNLAA 66
           GL  ET VRV+ LEK +CG+SR  FF GVAT+VTKLFN VE DVAVFGKKDYQ    +  
Sbjct: 181 GLGHETWVRVERLEKGLCGKSRPVFFRGVATIVTKLFNIVEPDVAVFGKKDYQQWRIIQR 240

Query: 67  LVED 71
           +V D
Sbjct: 241 MVRD 244

The following BLAST results are available for this feature:
BLAST of CsGy3G018520 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN43706.12.9e-1585.19hypothetical protein Csa_7G061730 [Cucumis sativus][more]
XP_022996300.17.8e-1366.15pantoate--beta-alanine ligase-like [Cucurbita maxima][more]
XP_022931128.11.0e-1266.15pantoate--beta-alanine ligase-like [Cucurbita moschata][more]
XP_022849488.12.3e-1264.06pantoate--beta-alanine ligase isoform X1 [Olea europaea var. sylvestris][more]
XP_022849489.12.3e-1264.06pantoate--beta-alanine ligase isoform X2 [Olea europaea var. sylvestris][more]
BLAST of CsGy3G018520 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G48840.17.7e-1560.94homolog of bacterial PANC[more]
BLAST of CsGy3G018520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O24035|PANC_LOTJA1.1e-1354.67Pantoate--beta-alanine ligase OS=Lotus japonicus OX=34305 GN=PANC PE=1 SV=3[more]
sp|Q9FKB3|PANC_ARATH1.4e-1360.94Pantoate--beta-alanine ligase OS=Arabidopsis thaliana OX=3702 GN=At5g48840 PE=1 ... [more]
sp|O24210|PANC_ORYSJ2.4e-1361.54Pantoate--beta-alanine ligase OS=Oryza sativa subsp. japonica OX=39947 GN=PANC P... [more]
sp|A4XYC5|PANC_PSEMY7.7e-1252.94Pantothenate synthetase OS=Pseudomonas mendocina (strain ymp) OX=399739 GN=panC ... [more]
sp|Q4K5Y3|PANC_PSEF56.5e-1151.47Pantothenate synthetase OS=Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B... [more]
BLAST of CsGy3G018520 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K7A9|A0A0A0K7A9_CUCSA1.9e-1585.19Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G061730 PE=4 SV=1[more]
tr|A0A2P4JMU1|A0A2P4JMU1_QUESU2.0e-1267.19Pantoate--beta-alanine ligase OS=Quercus suber OX=58331 GN=CFP56_41846 PE=3 SV=1[more]
tr|A0A2I4EQE2|A0A2I4EQE2_9ROSI3.3e-1267.19pantoate--beta-alanine ligase OS=Juglans regia OX=51240 GN=LOC108991706 PE=3 SV=... [more]
tr|A0A164Z4E3|A0A164Z4E3_DAUCA4.4e-1257.33Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018553 ... [more]
tr|A0A1J3IQV3|A0A1J3IQV3_NOCCA5.7e-1264.06Pantoate--beta-alanine ligase (Fragment) OS=Noccaea caerulescens OX=107243 GN=MP... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0015940pantothenate biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0004592pantoate-beta-alanine ligase activity
Vocabulary: INTERPRO
TermDefinition
IPR014729Rossmann-like_a/b/a_fold
IPR003721Pantoate_ligase
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015940 pantothenate biosynthetic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0004592 pantoate-beta-alanine ligase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G018520.1CsGy3G018520.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003721Pantoate-beta-alanine ligasePFAMPF02569Pantoate_ligasecoord: 12..72
e-value: 4.0E-16
score: 58.9
IPR003721Pantoate-beta-alanine ligasePANTHERPTHR21299:SF1PANTOATE--BETA-ALANINE LIGASEcoord: 3..71
IPR014729Rossmann-like alpha/beta/alpha sandwich foldGENE3DG3DSA:3.40.50.620coord: 2..78
e-value: 3.9E-17
score: 64.1
NoneNo IPR availablePANTHERPTHR21299CYTIDYLATE KINASE/PANTOATE-BETA-ALANINE LIGASEcoord: 3..71
NoneNo IPR availableSUPERFAMILYSSF52374Nucleotidylyl transferasecoord: 8..73

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy3G018520CSPI03G18680Wild cucumber (PI 183967)cgybcpiB110
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy3G018520Cucurbita maxima (Rimu)cgybcmaB332
CsGy3G018520Cucurbita maxima (Rimu)cgybcmaB410
CsGy3G018520Cucurbita moschata (Rifu)cgybcmoB301
CsGy3G018520Cucurbita moschata (Rifu)cgybcmoB386
CsGy3G018520Cucurbita pepo (Zucchini)cgybcpeB317
CsGy3G018520Cucurbita pepo (Zucchini)cgybcpeB362
CsGy3G018520Cucumber (Chinese Long) v2cgybcuB109
CsGy3G018520Bottle gourd (USVL1VR-Ls)cgyblsiB198
CsGy3G018520Melon (DHL92) v3.5.1cgybmeB210
CsGy3G018520Melon (DHL92) v3.6.1cgybmedB215
CsGy3G018520Watermelon (Charleston Gray)cgybwcgB214
CsGy3G018520Watermelon (97103) v1cgybwmB229
CsGy3G018520Silver-seed gourdcarcgybB0380
CsGy3G018520Silver-seed gourdcarcgybB0650
CsGy3G018520Cucumber (Chinese Long) v3cgybcucB117
CsGy3G018520Watermelon (97103) v2cgybwmbB206
CsGy3G018520Wax gourdcgybwgoB271