CSPI03G18680 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G18680
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionPantothenate synthetase
LocationChr3 : 14292975 .. 14293237 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCATGTTTCTTGCTGGTTTAGAGGATGAGACATCAGTGAGGGTTAAGCCTTTGGAGAAGGACATGTGTGGGAGAAGTAGACTTGCGTTCTTTATAGGGGTTGCTACTGTTGTTACTAAGTTGTTCAATACTGTGGAACTCGATGTTGCAGTGTTTGGAAAGAAGGATTATCAGGCGGATGGTGAGTCTTTGTAAGAATGTGAATGATTTTGATTTTCATACTTGTTTTGTGCTCAAAATTCATTGTTATTCATTTGAAT

mRNA sequence

ATGTCCATGTTTCTTGCTGGTTTAGAGGATGAGACATCAGTGAGGGTTAAGCCTTTGGAGAAGGACATGTGTGGGAGAAGTAGACTTGCGTTCTTTATAGGGGTTGCTACTGTTGTTACTAAGTTGTTCAATACTGTGGAACTCGATGTTGCAGTGTTTGGAAAGAAGGATTATCAGGCGGATGGTGAGTCTTTGTAA

Coding sequence (CDS)

ATGTCCATGTTTCTTGCTGGTTTAGAGGATGAGACATCAGTGAGGGTTAAGCCTTTGGAGAAGGACATGTGTGGGAGAAGTAGACTTGCGTTCTTTATAGGGGTTGCTACTGTTGTTACTAAGTTGTTCAATACTGTGGAACTCGATGTTGCAGTGTTTGGAAAGAAGGATTATCAGGCGGATGGTGAGTCTTTGTAA
Homology
[Close]
BLAST of CSPI03G18680 vs. Swiss-Prot
Match: PANC_ARATH (Pantoate--beta-alanine ligase OS=Arabidopsis thaliana GN=At5g48840 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.4e-13
Identity = 37/53 (69.81%), Postives = 42/53 (79.25%), Query Frame = 1 

Query: 7   GLEDETSVRVKPLEKDMCGRSRLAFFIGVATVVTKLFNTVELDVAVFGKKDYQ 60
           GL  ET +RV+ LEK  CG+SR  FF GVAT+VTKLFN VE DVA+FGKKDYQ
Sbjct: 128 GLGHETWIRVERLEKGFCGKSRPVFFRGVATIVTKLFNIVEPDVALFGKKDYQ 180

[Close]
BLAST of CSPI03G18680 vs. Swiss-Prot
Match: PANC_LOTJA (Pantoate--beta-alanine ligase OS=Lotus japonicus GN=PANC PE=1 SV=3)

HSP 1 Score: 76.3 bits (186), Expect = 1.4e-13
Identity = 37/54 (68.52%), Postives = 42/54 (77.78%), Query Frame = 1 

Query: 6   AGLEDETSVRVKPLEKDMCGRSRLAFFIGVATVVTKLFNTVELDVAVFGKKDYQ 60
           +G   ET VR + LEK +CG+SR  FF GVAT+VTKLFN VE DVAVFGKKDYQ
Sbjct: 127 SGFGHETWVRAEKLEKPLCGKSRPVFFRGVATIVTKLFNIVEPDVAVFGKKDYQ 180

[Close]
BLAST of CSPI03G18680 vs. Swiss-Prot
Match: PANC_ORYSJ (Pantoate--beta-alanine ligase OS=Oryza sativa subsp. japonica GN=PANC PE=2 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 3.2e-13
Identity = 38/54 (70.37%), Postives = 42/54 (77.78%), Query Frame = 1 

Query: 6   AGLEDETSVRVKPLEKDMCGRSRLAFFIGVATVVTKLFNTVELDVAVFGKKDYQ 60
           AG   ET VRV+ LEK MCG SR  FF GVAT+V+KLFN +E DVAVFGKKDYQ
Sbjct: 130 AGDGHETWVRVERLEKGMCGASRPVFFRGVATIVSKLFNIIEPDVAVFGKKDYQ 183

[Close]
BLAST of CSPI03G18680 vs. Swiss-Prot
Match: PANC_PSEMY (Pantothenate synthetase OS=Pseudomonas mendocina (strain ymp) GN=panC PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.5e-10
Identity = 32/57 (56.14%), Postives = 41/57 (71.93%), Query Frame = 1 

Query: 3   MFLAGLEDETSVRVKPLEKDMCGRSRLAFFIGVATVVTKLFNTVELDVAVFGKKDYQ 60
           M+  G+ D+T V V  + + +CG SR   F GVATVVTKLFN V+ D+AVFG+KDYQ
Sbjct: 98  MYPHGMGDQTRVTVPGVSEGLCGASRPGHFEGVATVVTKLFNMVQPDLAVFGEKDYQ 154

[Close]
BLAST of CSPI03G18680 vs. Swiss-Prot
Match: PANC_ALKEH (Pantothenate synthetase OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) GN=panC PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.3e-10
Identity = 32/57 (56.14%), Postives = 38/57 (66.67%), Query Frame = 1 

Query: 3   MFLAGLEDETSVRVKPLEKDMCGRSRLAFFIGVATVVTKLFNTVELDVAVFGKKDYQ 60
           M+  G+   T V V  L + +CG SR   F GVATVV KLFN V+ DVAVFG+KDYQ
Sbjct: 98  MYRGGVRQATRVEVGALAERLCGISRPGHFTGVATVVVKLFNLVQPDVAVFGRKDYQ 154

[Close]
BLAST of CSPI03G18680 vs. TrEMBL
Match: A0A0A0K7A9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G061730 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.5e-17
Identity = 52/66 (78.79%), Postives = 53/66 (80.30%), Query Frame = 1 

Query: 6  AGLEDETSVRVKPLEKDMCGRSRLAFFIGVATVVTKLFNTVELDVAVFGKK------DYQ 65
          +G EDETSVRVK LEKDMC RSRL FF GVATVVTKLFN VELDVAVF KK      DYQ
Sbjct: 24 SGSEDETSVRVKRLEKDMCWRSRLVFFRGVATVVTKLFNIVELDVAVFEKKDYQQWLDYQ 83

[Close]
BLAST of CSPI03G18680 vs. TrEMBL
Match: D7MMN0_ARALL (Pantoate-beta-alanine ligase OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_494947 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 4.2e-12
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 1 

Query: 7   GLEDETSVRVKPLEKDMCGRSRLAFFIGVATVVTKLFNTVELDVAVFGKKDYQ 60
           GL  ET +RV+ LEK +CG+SR  FF GVAT+VTKLFN VE DVAVFGKKDYQ
Sbjct: 128 GLGHETWIRVERLEKGLCGKSRPVFFRGVATIVTKLFNIVEPDVAVFGKKDYQ 180

[Close]
BLAST of CSPI03G18680 vs. TrEMBL
Match: M5VKJ0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008786mg PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 4.2e-12
Identity = 40/53 (75.47%), Postives = 43/53 (81.13%), Query Frame = 1 

Query: 7   GLEDETSVRVKPLEKDMCGRSRLAFFIGVATVVTKLFNTVELDVAVFGKKDYQ 60
           GL  ET VRV+ LEK MCG+SR  FF GVATVV+KLFN VE DVAVFGKKDYQ
Sbjct: 139 GLGHETWVRVERLEKGMCGQSRPVFFRGVATVVSKLFNIVEPDVAVFGKKDYQ 191

[Close]
BLAST of CSPI03G18680 vs. TrEMBL
Match: A0A164Z4E3_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018553 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 4.2e-12
Identity = 39/53 (73.58%), Postives = 43/53 (81.13%), Query Frame = 1 

Query: 7   GLEDETSVRVKPLEKDMCGRSRLAFFIGVATVVTKLFNTVELDVAVFGKKDYQ 60
           GL  ET VRV+ LEK +CG+SR  FF GVAT+VTKLFN VE DVAVFGKKDYQ
Sbjct: 117 GLGHETWVRVERLEKGLCGKSRPIFFRGVATIVTKLFNIVEPDVAVFGKKDYQ 169

[Close]
BLAST of CSPI03G18680 vs. TrEMBL
Match: A0A0A0L9F0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G223300 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 4.2e-12
Identity = 39/50 (78.00%), Postives = 41/50 (82.00%), Query Frame = 1 

Query: 10 DETSVRVKPLEKDMCGRSRLAFFIGVATVVTKLFNTVELDVAVFGKKDYQ 60
          DETS RV+ +EK MCGRSR  FF GV TVVTKLFN VELDVAVF KKDYQ
Sbjct: 33 DETSARVERVEKGMCGRSRPIFFRGVPTVVTKLFNIVELDVAVFEKKDYQ 82

[Close]
BLAST of CSPI03G18680 vs. TAIR10
Match: AT5G48840.1 (AT5G48840.1 homolog of bacterial PANC)

HSP 1 Score: 76.3 bits (186), Expect = 8.1e-15
Identity = 37/53 (69.81%), Postives = 42/53 (79.25%), Query Frame = 1 

Query: 7   GLEDETSVRVKPLEKDMCGRSRLAFFIGVATVVTKLFNTVELDVAVFGKKDYQ 60
           GL  ET +RV+ LEK  CG+SR  FF GVAT+VTKLFN VE DVA+FGKKDYQ
Sbjct: 128 GLGHETWIRVERLEKGFCGKSRPVFFRGVATIVTKLFNIVEPDVALFGKKDYQ 180

[Close]
BLAST of CSPI03G18680 vs. NCBI nr
Match: gi|700188473|gb|KGN43706.1| (hypothetical protein Csa_7G061730 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 2.2e-17
Identity = 52/66 (78.79%), Postives = 53/66 (80.30%), Query Frame = 1 

Query: 6  AGLEDETSVRVKPLEKDMCGRSRLAFFIGVATVVTKLFNTVELDVAVFGKK------DYQ 65
          +G EDETSVRVK LEKDMC RSRL FF GVATVVTKLFN VELDVAVF KK      DYQ
Sbjct: 24 SGSEDETSVRVKRLEKDMCWRSRLVFFRGVATVVTKLFNIVELDVAVFEKKDYQQWLDYQ 83

[Close]
BLAST of CSPI03G18680 vs. NCBI nr
Match: gi|694415730|ref|XP_009336027.1| (PREDICTED: pantoate--beta-alanine ligase-like isoform X1 [Pyrus x bretschneideri])

HSP 1 Score: 79.0 bits (193), Expect = 3.6e-12
Identity = 40/53 (75.47%), Postives = 43/53 (81.13%), Query Frame = 1 

Query: 7   GLEDETSVRVKPLEKDMCGRSRLAFFIGVATVVTKLFNTVELDVAVFGKKDYQ 60
           G+  ET VRV+ LEK MCGRSR  FF GVATVV+KLFN VE DVAVFGKKDYQ
Sbjct: 136 GVGHETWVRVEKLEKGMCGRSRPVFFRGVATVVSKLFNIVEPDVAVFGKKDYQ 188

[Close]
BLAST of CSPI03G18680 vs. NCBI nr
Match: gi|657961727|ref|XP_008372459.1| (PREDICTED: LOW QUALITY PROTEIN: pantoate--beta-alanine ligase [Malus domestica])

HSP 1 Score: 78.6 bits (192), Expect = 4.6e-12
Identity = 39/53 (73.58%), Postives = 43/53 (81.13%), Query Frame = 1 

Query: 7   GLEDETSVRVKPLEKDMCGRSRLAFFIGVATVVTKLFNTVELDVAVFGKKDYQ 60
           G   ETSVRV+ LEK MCGR+R  FF GVATVV+KLFN VE DVAVFGK+DYQ
Sbjct: 137 GAGHETSVRVERLEKGMCGRTRPVFFRGVATVVSKLFNIVEXDVAVFGKQDYQ 189

[Close]
BLAST of CSPI03G18680 vs. NCBI nr
Match: gi|595793359|ref|XP_007200428.1| (hypothetical protein PRUPE_ppa008786mg [Prunus persica])

HSP 1 Score: 78.2 bits (191), Expect = 6.1e-12
Identity = 40/53 (75.47%), Postives = 43/53 (81.13%), Query Frame = 1 

Query: 7   GLEDETSVRVKPLEKDMCGRSRLAFFIGVATVVTKLFNTVELDVAVFGKKDYQ 60
           GL  ET VRV+ LEK MCG+SR  FF GVATVV+KLFN VE DVAVFGKKDYQ
Sbjct: 139 GLGHETWVRVERLEKGMCGQSRPVFFRGVATVVSKLFNIVEPDVAVFGKKDYQ 191

[Close]
BLAST of CSPI03G18680 vs. NCBI nr
Match: gi|727422114|ref|XP_010439740.1| (PREDICTED: pantoate--beta-alanine ligase-like isoform X1 [Camelina sativa])

HSP 1 Score: 78.2 bits (191), Expect = 6.1e-12
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 1 

Query: 7   GLEDETSVRVKPLEKDMCGRSRLAFFIGVATVVTKLFNTVELDVAVFGKKDYQ 60
           GL  ET +RV+ LEK +CG+SR  FF GVAT+VTKLFN VE DVAVFGKKDYQ
Sbjct: 128 GLGHETWIRVERLEKGLCGKSRPVFFRGVATIVTKLFNIVEPDVAVFGKKDYQ 180

The following BLAST results are available for this feature:
BLAST of CSPI03G18680 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PANC_ARATH1.4e-1369.81Pantoate--beta-alanine ligase OS=Arabidopsis thaliana GN=At5g48840 PE=1 SV=1[more]
PANC_LOTJA1.4e-1368.52Pantoate--beta-alanine ligase OS=Lotus japonicus GN=PANC PE=1 SV=3[more]
PANC_ORYSJ3.2e-1370.37Pantoate--beta-alanine ligase OS=Oryza sativa subsp. japonica GN=PANC PE=2 SV=2[more]
PANC_PSEMY1.5e-1056.14Pantothenate synthetase OS=Pseudomonas mendocina (strain ymp) GN=panC PE=3 SV=1[more]
PANC_ALKEH4.3e-1056.14Pantothenate synthetase OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM... [more]
BLAST of CSPI03G18680 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7A9_CUCSA1.5e-1778.79Uncharacterized protein OS=Cucumis sativus GN=Csa_7G061730 PE=4 SV=1[more]
D7MMN0_ARALL4.2e-1271.70Pantoate-beta-alanine ligase OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_4... [more]
M5VKJ0_PRUPE4.2e-1275.47Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008786mg PE=3 SV=1[more]
A0A164Z4E3_DAUCA4.2e-1273.58Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018553 PE=4 SV=1[more]
A0A0A0L9F0_CUCSA4.2e-1278.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G223300 PE=4 SV=1[more]
BLAST of CSPI03G18680 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G48840.18.1e-1569.81 homolog of bacterial PANC[more]
BLAST of CSPI03G18680 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700188473|gb|KGN43706.1|2.2e-1778.79hypothetical protein Csa_7G061730 [Cucumis sativus][more]
gi|694415730|ref|XP_009336027.1|3.6e-1275.47PREDICTED: pantoate--beta-alanine ligase-like isoform X1 [Pyrus x bretschneideri... [more]
gi|657961727|ref|XP_008372459.1|4.6e-1273.58PREDICTED: LOW QUALITY PROTEIN: pantoate--beta-alanine ligase [Malus domestica][more]
gi|595793359|ref|XP_007200428.1|6.1e-1275.47hypothetical protein PRUPE_ppa008786mg [Prunus persica][more]
gi|727422114|ref|XP_010439740.1|6.1e-1271.70PREDICTED: pantoate--beta-alanine ligase-like isoform X1 [Camelina sativa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003721Pantoate_ligase
IPR014729Rossmann-like_a/b/a_fold
Vocabulary: Molecular Function
TermDefinition
GO:0004592pantoate-beta-alanine ligase activity
Vocabulary: Biological Process
TermDefinition
GO:0015940pantothenate biosynthetic process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019482 beta-alanine metabolic process
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0015940 pantothenate biosynthetic process
cellular_component GO:0005829 cytosol
cellular_component GO:0005575 cellular_component
molecular_function GO:0004592 pantoate-beta-alanine ligase activity
molecular_function GO:0042803 protein homodimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G18680.1CSPI03G18680.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003721Pantoate-beta-alanine ligasePANTHERPTHR21299:SF1PANTOATE--BETA-ALANINE LIGASEcoord: 9..59
score: 8.3
IPR003721Pantoate-beta-alanine ligasePFAMPF02569Pantoate_ligasecoord: 12..59
score: 1.6
IPR014729Rossmann-like alpha/beta/alpha sandwich foldGENE3DG3DSA:3.40.50.620coord: 9..59
score: 9.1
NoneNo IPR availablePANTHERPTHR21299CYTIDYLATE KINASE/PANTOATE-BETA-ALANINE LIGASEcoord: 9..59
score: 8.3
NoneNo IPR availableunknownSSF52374Nucleotidylyl transferasecoord: 7..59
score: 3.94

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G18680CsGy3G018520Cucumber (Gy14) v2cgybcpiB110
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G18680Cucumber (Chinese Long) v3cpicucB144
CSPI03G18680Watermelon (97103) v2cpiwmbB221
CSPI03G18680Wax gourdcpiwgoB283
CSPI03G18680Cucurbita maxima (Rimu)cmacpiB326
CSPI03G18680Cucurbita maxima (Rimu)cmacpiB705
CSPI03G18680Cucurbita moschata (Rifu)cmocpiB315
CSPI03G18680Cucurbita moschata (Rifu)cmocpiB698
CSPI03G18680Cucumber (Chinese Long) v2cpicuB120
CSPI03G18680Melon (DHL92) v3.5.1cpimeB241
CSPI03G18680Watermelon (Charleston Gray)cpiwcgB237
CSPI03G18680Watermelon (97103) v1cpiwmB242
CSPI03G18680Cucurbita pepo (Zucchini)cpecpiB208
CSPI03G18680Cucurbita pepo (Zucchini)cpecpiB388
CSPI03G18680Bottle gourd (USVL1VR-Ls)cpilsiB209
CSPI03G18680Melon (DHL92) v3.6.1cpimedB239
CSPI03G18680Silver-seed gourdcarcpiB0405
CSPI03G18680Silver-seed gourdcarcpiB0685