CsGy3G017760 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G017760
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr3 : 13713399 .. 13713873 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCATTCCCAAAATACCCCTGTTTTCGGTGGAGCCTTGAGCGCAACCGAGGATGACGGGAGGGGTAGAAAGAGAATTAGAGAAGGTAAATTTTTCTCTGACGAGATTTCCCTCAGCCAAGGTACCGTCAGCGTAGAAGTAGGAGTAGTGGCAGAGGCGATTTTGATCACAAGAAGTGGGAAGAGTAAAATCTGGAATTCGGGGTTTGCAGATGGGGTGATTACAAGGGAGGAGAGAAAAAGAAGAGGAGAGAGAAGGATCAAAGGTGGCGGTTTTAGGCTTGGGCAAGGGGGGCAATCTTTTCTTAACTTTTTTGTCATGACATTGAATCCAAGAGAGTTGGCTGCCGGTGTCTAGAACCAAGTCAGTGGGCTGTGGCGGCGTTCCGATCGGAAGAGAGACGACGAGGGCAGAGGAGGAGTATTTGAAAGGAAGCTTGAAGGGGCCATGGGATGATGGCTTTTTGACGTAA

mRNA sequence

ATGATTCATTCCCAAAATACCCCTGTTTTCGGTGGAGCCTTGAGCGCAACCGAGGATGACGGGAGGGGTAGAAAGAGAATTAGAGAAGGTAAATTTTTCTCTGACGAGATTTCCCTCAGCCAAGGTACCGTCAGCGTAGAAGTAGGAGTAGTGGCAGAGGCGATTTTGATCACAAGAAGTGGGAAGAGTAAAATCTGGAATTCGGGGTTTGCAGATGGGGTGATTACAAGGGAGGAGAGAAAAAGAAGAGGAGAGAGAAGGATCAAAGGTGGCGAGAGTTGGCTGCCGGTGTCTAGAACCAAGTCAGTGGGCTGTGGCGGCGTTCCGATCGGAAGAGAGACGACGAGGGCAGAGGAGGAGTATTTGAAAGGAAGCTTGAAGGGGCCATGGGATGATGGCTTTTTGACGTAA

Coding sequence (CDS)

ATGATTCATTCCCAAAATACCCCTGTTTTCGGTGGAGCCTTGAGCGCAACCGAGGATGACGGGAGGGGTAGAAAGAGAATTAGAGAAGGTAAATTTTTCTCTGACGAGATTTCCCTCAGCCAAGGTACCGTCAGCGTAGAAGTAGGAGTAGTGGCAGAGGCGATTTTGATCACAAGAAGTGGGAAGAGTAAAATCTGGAATTCGGGGTTTGCAGATGGGGTGATTACAAGGGAGGAGAGAAAAAGAAGAGGAGAGAGAAGGATCAAAGGTGGCGAGAGTTGGCTGCCGGTGTCTAGAACCAAGTCAGTGGGCTGTGGCGGCGTTCCGATCGGAAGAGAGACGACGAGGGCAGAGGAGGAGTATTTGAAAGGAAGCTTGAAGGGGCCATGGGATGATGGCTTTTTGACGTAA

Protein sequence

MIHSQNTPVFGGALSATEDDGRGRKRIREGKFFSDEISLSQGTVSVEVGVVAEAILITRSGKSKIWNSGFADGVITREERKRRGERRIKGGESWLPVSRTKSVGCGGVPIGRETTRAEEEYLKGSLKGPWDDGFLT

Homology

[Close]

BLAST of CsGy3G017760 vs. NCBI nr
Match: KGN57462.1 (hypothetical protein Csa_3G188345 [Cucumis sativus])

HSP 1 Score: 177.2 bits (448), Expect = 3.8e-41
Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1  MIHSQNTPVFGGALSATEDDGRGRKRIREGKFFSDEISLSQGTVSVEVGVVAEAILITRS 60
          MIHSQNTPVFGGALSATEDDGRGRKRIREGKFFSDEISLSQGTVSVEVGVVAEAIL+TRS
Sbjct: 1  MIHSQNTPVFGGALSATEDDGRGRKRIREGKFFSDEISLSQGTVSVEVGVVAEAILVTRS 60

Query: 61 GKSKIWNSGFADGVITREERKRRGERRIKGG 92
          GK KIWNSGFADGVITREERKRRGERRIKGG
Sbjct: 61 GKGKIWNSGFADGVITREERKRRGERRIKGG 91

[Close]

BLAST of CsGy3G017760 vs. NCBI nr
Match: KYP75964.1 (hypothetical protein KK1_020177, partial [Cajanus cajan])

HSP 1 Score: 90.5 bits (223), Expect = 4.7e-15
Identity = 47/98 (47.96%), Postives = 63/98 (64.29%), Query Frame = 0


Query: 2   IHSQNTPVFGGALSATEDDGRGRKRIREGKFFSDEISLSQGTVSVEVGVVAEAILITRSG 61
           +HSQN P  GG  SAT+D  RG+K   E + F DEI+L   TV VE+G+VAEA+L+  S 
Sbjct: 1   VHSQNAPWVGGLGSATQDQTRGKKGRGESELFLDEITLGVSTVGVEIGIVAEAVLVAGSW 60

Query: 62  KSKIWNSGFADGVITREERKRRGERRIKGGESWLPVSR 100
           + K+ NS  A+GV   E+ +  GERR+KGG    P+ R
Sbjct: 61  EGKVGNSRLAEGVRAGEDGEGGGERRVKGGGRGRPLGR 98

[Close]

BLAST of CsGy3G017760 vs. NCBI nr
Match: PON89095.1 (hypothetical protein TorRG33x02_151700 [Trema orientalis])

HSP 1 Score: 88.6 bits (218), Expect = 1.8e-14
Identity = 47/89 (52.81%), Postives = 58/89 (65.17%), Query Frame = 0


Query: 2   IHSQNTPVFGGALSATEDDGRGRKRIREGKFFSDEISLSQGTVSVEVGVVAEAILITRSG 61
           +H QN     G L AT+D+ RG    REG+FFSDEI+LS+G V VEVGVVAEA+L+   G
Sbjct: 206 VHPQNALGVAGVLGATKDERRGAYGTREGEFFSDEITLSEGAVGVEVGVVAEAVLVAGGG 265

Query: 62  KSKIWNSGFADGVITREERKRRGERRIKG 91
           + KI NSG A+GV   +      ER IKG
Sbjct: 266 EGKIGNSGLANGVSAGQXXXXXRERGIKG 294

[Close]

BLAST of CsGy3G017760 vs. TrEMBL
Match: tr|A0A0A0LA25|A0A0A0LA25_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G188345 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.5e-41
Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1  MIHSQNTPVFGGALSATEDDGRGRKRIREGKFFSDEISLSQGTVSVEVGVVAEAILITRS 60
          MIHSQNTPVFGGALSATEDDGRGRKRIREGKFFSDEISLSQGTVSVEVGVVAEAIL+TRS
Sbjct: 1  MIHSQNTPVFGGALSATEDDGRGRKRIREGKFFSDEISLSQGTVSVEVGVVAEAILVTRS 60

Query: 61 GKSKIWNSGFADGVITREERKRRGERRIKGG 92
          GK KIWNSGFADGVITREERKRRGERRIKGG
Sbjct: 61 GKGKIWNSGFADGVITREERKRRGERRIKGG 91

[Close]

BLAST of CsGy3G017760 vs. TrEMBL
Match: tr|A0A151U9G1|A0A151U9G1_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_020177 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.1e-15
Identity = 47/98 (47.96%), Postives = 63/98 (64.29%), Query Frame = 0


Query: 2   IHSQNTPVFGGALSATEDDGRGRKRIREGKFFSDEISLSQGTVSVEVGVVAEAILITRSG 61
           +HSQN P  GG  SAT+D  RG+K   E + F DEI+L   TV VE+G+VAEA+L+  S 
Sbjct: 1   VHSQNAPWVGGLGSATQDQTRGKKGRGESELFLDEITLGVSTVGVEIGIVAEAVLVAGSW 60

Query: 62  KSKIWNSGFADGVITREERKRRGERRIKGGESWLPVSR 100
           + K+ NS  A+GV   E+ +  GERR+KGG    P+ R
Sbjct: 61  EGKVGNSRLAEGVRAGEDGEGGGERRVKGGGRGRPLGR 98

[Close]

BLAST of CsGy3G017760 vs. TrEMBL
Match: tr|A0A2P5EUA6|A0A2P5EUA6_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_151700 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.2e-14
Identity = 47/89 (52.81%), Postives = 58/89 (65.17%), Query Frame = 0


Query: 2   IHSQNTPVFGGALSATEDDGRGRKRIREGKFFSDEISLSQGTVSVEVGVVAEAILITRSG 61
           +H QN     G L AT+D+ RG    REG+FFSDEI+LS+G V VEVGVVAEA+L+   G
Sbjct: 206 VHPQNALGVAGVLGATKDERRGAYGTREGEFFSDEITLSEGAVGVEVGVVAEAVLVAGGG 265

Query: 62  KSKIWNSGFADGVITREERKRRGERRIKG 91
           + KI NSG A+GV   +      ER IKG
Sbjct: 266 EGKIGNSGLANGVSAGQXXXXXRERGIKG 294

The following BLAST results are available for this feature:

BLAST of CsGy3G017760 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57462.1	3.8e-41	97.80	hypothetical protein Csa_3G188345 [Cucumis sativus]	[more]
KYP75964.1	4.7e-15	47.96	hypothetical protein KK1_020177, partial [Cajanus cajan]	[more]
PON89095.1	1.8e-14	52.81	hypothetical protein TorRG33x02_151700 [Trema orientalis]	[more]

BLAST of CsGy3G017760 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy3G017760 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy3G017760 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LA25\|A0A0A0LA25_CUCSA	2.5e-41	97.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G188345 PE=4 SV=1	[more]
tr\|A0A151U9G1\|A0A151U9G1_CAJCA	3.1e-15	47.96	Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_020177 PE=4 S...	[more]
tr\|A0A2P5EUA6\|A0A2P5EUA6_9ROSA	1.2e-14	52.81	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_151700 PE=4 S...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G017760.1	CsGy3G017760.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G017760	Cucurbita maxima (Rimu)	cgybcmaB312
CsGy3G017760	Cucurbita maxima (Rimu)	cgybcmaB371
CsGy3G017760	Cucurbita moschata (Rifu)	cgybcmoB285
CsGy3G017760	Cucurbita moschata (Rifu)	cgybcmoB342
CsGy3G017760	Cucurbita pepo (Zucchini)	cgybcpeB383
CsGy3G017760	Cucurbita pepo (Zucchini)	cgybcpeB401
CsGy3G017760	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G017760	Bottle gourd (USVL1VR-Ls)	cgyblsiB198
CsGy3G017760	Melon (DHL92) v3.5.1	cgybmeB210
CsGy3G017760	Melon (DHL92) v3.6.1	cgybmedB215
CsGy3G017760	Watermelon (Charleston Gray)	cgybwcgB214
CsGy3G017760	Watermelon (97103) v1	cgybwmB229
CsGy3G017760	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G017760	Silver-seed gourd	carcgybB0190
CsGy3G017760	Silver-seed gourd	carcgybB0758
CsGy3G017760	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G017760	Watermelon (97103) v2	cgybwmbB206
CsGy3G017760	Wax gourd	cgybwgoB271