CsGy3G017520 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G017520
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Heavy metal transport/detoxification superfamily protein
Location	Chr3 : 13492590 .. 13493251 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAGGTAATGATGAGTTTTTTAGAAAAAGCACATACTGATGTGGCTGTGAAGCTGAAATCACACACACTTTTAATGAGGTTGACCGATGTTCCTCTCCTTTAACACAATTCTTCTTCTTCTTCTTCTTCACTTAATATTTCCTTCCATTTTCTTTGCAGCACAGAAAGTTGATACGAAGGAAGAAAATGTCAAAAAATCCTTCACATTTCTTGAAGGTTGAGGTTAGTTGTTCGTTACCAAGAACATTTGATCATACTCCCTTTAATAGCCGTTTTGTTTTTTGTTGTTTCCAAAAACTTGATTTAAAAATTATAAAATGGCTTGAAGTTCAAATATGTTTTTAAATAAGATGAAGATGAAGGCAAAACAAAATGGTTATTAGTGGATACCTTTTTTTTTTCATTTGTAAATATTGGTTTCTTTAATTTGCTTGTTCACACATTGTTTTAACAGACACGTGTTCTTAAAGTACACGTTGATTGTCAAGGTTGCCTCCAGAGAGTAAGAAAACTTCTCAACAGGATTGAAGGTATTTATTATTATTTTGTTGCTTGTAAAAACTAATCTATAGGTTCTTTTTTTATTTTATACTAAGAAATATGTACACTTTAGTTTGAATAACAGGTTTGTTTGTGACTCGTGTGAAACACATATGA

mRNA sequence

ATGGGGAAGCACAGAAAGTTGATACGAAGGAAGAAAATGTCAAAAAATCCTTCACATTTCTTGAAGGTTGAGACACGTGTTCTTAAAGTACACGTTGATTGTCAAGGTTGCCTCCAGAGAGTAAGAAAACTTCTCAACAGGATTGAAGGTTTGTTTGTGACTCGTGTGAAACACATATGA

Coding sequence (CDS)

ATGGGGAAGCACAGAAAGTTGATACGAAGGAAGAAAATGTCAAAAAATCCTTCACATTTCTTGAAGGTTGAGACACGTGTTCTTAAAGTACACGTTGATTGTCAAGGTTGCCTCCAGAGAGTAAGAAAACTTCTCAACAGGATTGAAGGTTTGTTTGTGACTCGTGTGAAACACATATGA

Protein sequence

MGKHRKLIRRKKMSKNPSHFLKVETRVLKVHVDCQGCLQRVRKLLNRIEGLFVTRVKHI

Homology

[Close]

BLAST of CsGy3G017520 vs. NCBI nr
Match: KGN57433.1 (hypothetical protein Csa_3G185130 [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 4.3e-13
Identity = 38/40 (95.00%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 13 MSKNPSHFLKVETRVLKVHVDCQGCLQRVRKLLNRIEGLF 53
          MSKNPSHFLKVETRVLKVHVDCQGCLQRVRKLLNRIEG++
Sbjct: 1  MSKNPSHFLKVETRVLKVHVDCQGCLQRVRKLLNRIEGVY 40

[Close]

BLAST of CsGy3G017520 vs. NCBI nr
Match: XP_008457088.1 (PREDICTED: uncharacterized protein LOC103496852 [Cucumis melo])

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-10
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 0


Query: 13 MSKNPSHFLKVETRVLKVHVDCQGCLQRVRKLLNRIEGLF 53
          MSKN SHFLKVET VLKVH+DCQGCL RVRKLLNRIEG++
Sbjct: 1  MSKNCSHFLKVETHVLKVHIDCQGCLHRVRKLLNRIEGVY 40

[Close]

BLAST of CsGy3G017520 vs. NCBI nr
Match: XP_022949333.1 (heavy metal-associated isoprenylated plant protein 37-like [Cucurbita moschata])

HSP 1 Score: 60.1 bits (144), Expect = 3.0e-06
Identity = 26/40 (65.00%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 13 MSKNPSHFLKVETRVLKVHVDCQGCLQRVRKLLNRIEGLF 53
          MSKN   F K+E  VLKVH++CQGC++RVRKLL RIEG++
Sbjct: 1  MSKNQFRFSKIEIHVLKVHMNCQGCMERVRKLLKRIEGVY 40

[Close]

BLAST of CsGy3G017520 vs. NCBI nr
Match: XP_022998165.1 (heavy metal-associated isoprenylated plant protein 32-like [Cucurbita maxima])

HSP 1 Score: 60.1 bits (144), Expect = 3.0e-06
Identity = 26/40 (65.00%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 13 MSKNPSHFLKVETRVLKVHVDCQGCLQRVRKLLNRIEGLF 53
          MSKN   F K+E  VLKVH++CQGC++RVRKLL RIEG++
Sbjct: 1  MSKNQFRFSKIEIHVLKVHMNCQGCMERVRKLLKRIEGVY 40

[Close]

BLAST of CsGy3G017520 vs. NCBI nr
Match: XP_023525957.1 (heavy metal-associated isoprenylated plant protein 32-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 58.9 bits (141), Expect = 6.6e-06
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 13 MSKNPSHFLKVETRVLKVHVDCQGCLQRVRKLLNRIEGLF 53
          MSKN   F K+E  VLKVH++C+GC++RVRKLL RIEG++
Sbjct: 1  MSKNQFRFSKIEIHVLKVHMNCEGCMERVRKLLKRIEGVY 40

[Close]

BLAST of CsGy3G017520 vs. TAIR10
Match: AT3G06130.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 51.2 bits (121), Expect = 2.5e-07
Identity = 22/44 (50.00%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 13 MSKNPSHFLKVETRVLKVHVDCQGCLQRVRKLLNRIEGLFVTRV 57
          MSK    F+K++T VLKV++ C GC Q+V+K+L +IEG+F T++
Sbjct: 1  MSK--EEFMKIQTCVLKVNIHCDGCKQKVKKILQKIEGVFTTKI 42

[Close]

BLAST of CsGy3G017520 vs. TAIR10
Match: AT5G19090.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 51.2 bits (121), Expect = 2.5e-07
Identity = 22/44 (50.00%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 13 MSKNPSHFLKVETRVLKVHVDCQGCLQRVRKLLNRIEGLFVTRV 57
          MSK    F+K++T VLKV++ C GC Q+V+K+L +IEG+F T++
Sbjct: 1  MSK--EEFMKIQTCVLKVNIHCDGCKQKVKKILQKIEGVFTTKI 42

[Close]

BLAST of CsGy3G017520 vs. TAIR10
Match: AT3G05220.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 41.6 bits (96), Expect = 2.0e-04
Identity = 17/37 (45.95%), Postives = 27/37 (72.97%), Query Frame = 0


Query: 16 NPSHFLKVETRVLKVHVDCQGCLQRVRKLLNRIEGLF 53
          N    +K++T VLKV+V C+GC  +V+K L +IEG++
Sbjct: 2  NKQDVMKLQTCVLKVNVHCEGCKHKVKKQLQKIEGVY 38

[Close]

BLAST of CsGy3G017520 vs. TAIR10
Match: AT1G23000.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 40.8 bits (94), Expect = 3.4e-04
Identity = 16/37 (43.24%), Postives = 29/37 (78.38%), Query Frame = 0


Query: 21 LKVETRVLKVHVDCQGCLQRVRKLLNRIEGLFVTRVK 58
          LK++T  L+V++ C+GC ++V+KLL RIEG+   +++
Sbjct: 10 LKIQTFSLRVNIHCEGCNKKVKKLLQRIEGVCHVKIE 46

[Close]

BLAST of CsGy3G017520 vs. TAIR10
Match: AT5G27690.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 39.7 bits (91), Expect = 7.5e-04
Identity = 13/36 (36.11%), Postives = 28/36 (77.78%), Query Frame = 0


Query: 21 LKVETRVLKVHVDCQGCLQRVRKLLNRIEGLFVTRV 57
          L+  T VL+V + C+GC ++++K+L++I+G++ T +
Sbjct: 27 LRYTTWVLRVSIHCEGCKRKIKKILSKIDGVYTTNI 62

[Close]

BLAST of CsGy3G017520 vs. Swiss-Prot
Match: sp|Q9M8K5|HIP32_ARATH (Heavy metal-associated isoprenylated plant protein 32 OS=Arabidopsis thaliana OX=3702 GN=HIPP32 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 4.5e-06
Identity = 22/44 (50.00%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 13 MSKNPSHFLKVETRVLKVHVDCQGCLQRVRKLLNRIEGLFVTRV 57
          MSK    F+K++T VLKV++ C GC Q+V+K+L +IEG+F T++
Sbjct: 1  MSK--EEFMKIQTCVLKVNIHCDGCKQKVKKILQKIEGVFTTKI 42

[Close]

BLAST of CsGy3G017520 vs. Swiss-Prot
Match: sp|F4JZL7|HIP33_ARATH (Heavy metal-associated isoprenylated plant protein 33 OS=Arabidopsis thaliana OX=3702 GN=HIPP33 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 4.5e-06
Identity = 22/44 (50.00%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 13 MSKNPSHFLKVETRVLKVHVDCQGCLQRVRKLLNRIEGLFVTRV 57
          MSK    F+K++T VLKV++ C GC Q+V+K+L +IEG+F T++
Sbjct: 1  MSK--EEFMKIQTCVLKVNIHCDGCKQKVKKILQKIEGVFTTKI 42

[Close]

BLAST of CsGy3G017520 vs. TrEMBL
Match: tr|A0A0A0L6R9|A0A0A0L6R9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G185130 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.8e-13
Identity = 38/40 (95.00%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 13 MSKNPSHFLKVETRVLKVHVDCQGCLQRVRKLLNRIEGLF 53
          MSKNPSHFLKVETRVLKVHVDCQGCLQRVRKLLNRIEG++
Sbjct: 1  MSKNPSHFLKVETRVLKVHVDCQGCLQRVRKLLNRIEGVY 40

[Close]

BLAST of CsGy3G017520 vs. TrEMBL
Match: tr|A0A1S3C605|A0A1S3C605_CUCME (uncharacterized protein LOC103496852 OS=Cucumis melo OX=3656 GN=LOC103496852 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 7.7e-11
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 0


Query: 13 MSKNPSHFLKVETRVLKVHVDCQGCLQRVRKLLNRIEGLF 53
          MSKN SHFLKVET VLKVH+DCQGCL RVRKLLNRIEG++
Sbjct: 1  MSKNCSHFLKVETHVLKVHIDCQGCLHRVRKLLNRIEGVY 40

[Close]

BLAST of CsGy3G017520 vs. TrEMBL
Match: tr|A0A2N9IK89|A0A2N9IK89_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS52253 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.5e-06
Identity = 24/40 (60.00%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 13 MSKNPSHFLKVETRVLKVHVDCQGCLQRVRKLLNRIEGLF 53
          MS N   FLK+ET VLKVH++CQGC+ +VRKLL ++EG++
Sbjct: 1  MSTNEFEFLKIETYVLKVHMNCQGCMHKVRKLLRKVEGVY 40

[Close]

BLAST of CsGy3G017520 vs. TrEMBL
Match: tr|A0A2P4L8D9|A0A2P4L8D9_QUESU (Heavy metal-associated isoprenylated plant protein 37 OS=Quercus suber OX=58331 GN=CFP56_35734 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 4.8e-05
Identity = 23/40 (57.50%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 13 MSKNPSHFLKVETRVLKVHVDCQGCLQRVRKLLNRIEGLF 53
          MS N   FLK+ET VLKV+++CQGC+ +VRKLL ++EG++
Sbjct: 1  MSSNEFEFLKIETYVLKVYMNCQGCMLKVRKLLRKVEGVY 40

[Close]

BLAST of CsGy3G017520 vs. TrEMBL
Match: tr|B9H366|B9H366_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G091700v3 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 8.3e-05
Identity = 22/37 (59.46%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 21 LKVETRVLKVHVDCQGCLQRVRKLLNRIEGLFVTRVK 58
          LKVET  LKVH++C+GC Q+VRKLLN+I+G++   +K
Sbjct: 10 LKVETHYLKVHINCEGCKQKVRKLLNKIDGVYSVNIK 46

The following BLAST results are available for this feature:

BLAST of CsGy3G017520 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57433.1	4.3e-13	95.00	hypothetical protein Csa_3G185130 [Cucumis sativus]	[more]
XP_008457088.1	1.2e-10	85.00	PREDICTED: uncharacterized protein LOC103496852 [Cucumis melo]	[more]
XP_022949333.1	3.0e-06	65.00	heavy metal-associated isoprenylated plant protein 37-like [Cucurbita moschata]	[more]
XP_022998165.1	3.0e-06	65.00	heavy metal-associated isoprenylated plant protein 32-like [Cucurbita maxima]	[more]
XP_023525957.1	6.6e-06	62.50	heavy metal-associated isoprenylated plant protein 32-like [Cucurbita pepo subsp...	[more]

BLAST of CsGy3G017520 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G06130.1	2.5e-07	50.00	Heavy metal transport/detoxification superfamily protein	[more]
AT5G19090.1	2.5e-07	50.00	Heavy metal transport/detoxification superfamily protein	[more]
AT3G05220.1	2.0e-04	45.95	Heavy metal transport/detoxification superfamily protein	[more]
AT1G23000.1	3.4e-04	43.24	Heavy metal transport/detoxification superfamily protein	[more]
AT5G27690.1	7.5e-04	36.11	Heavy metal transport/detoxification superfamily protein	[more]

BLAST of CsGy3G017520 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M8K5\|HIP32_ARATH	4.5e-06	50.00	Heavy metal-associated isoprenylated plant protein 32 OS=Arabidopsis thaliana OX...	[more]
sp\|F4JZL7\|HIP33_ARATH	4.5e-06	50.00	Heavy metal-associated isoprenylated plant protein 33 OS=Arabidopsis thaliana OX...	[more]

BLAST of CsGy3G017520 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L6R9\|A0A0A0L6R9_CUCSA	2.8e-13	95.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G185130 PE=4 SV=1	[more]
tr\|A0A1S3C605\|A0A1S3C605_CUCME	7.7e-11	85.00	uncharacterized protein LOC103496852 OS=Cucumis melo OX=3656 GN=LOC103496852 PE=...	[more]
tr\|A0A2N9IK89\|A0A2N9IK89_FAGSY	7.5e-06	60.00	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS52253 PE=4 SV=1	[more]
tr\|A0A2P4L8D9\|A0A2P4L8D9_QUESU	4.8e-05	57.50	Heavy metal-associated isoprenylated plant protein 37 OS=Quercus suber OX=58331 ...	[more]
tr\|B9H366\|B9H366_POPTR	8.3e-05	59.46	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G091700v3 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0030001	metal ion transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036163	HMA_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030001	metal ion transport
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G017520.1	CsGy3G017520.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036163	Heavy metal-associated domain superfamily	SUPERFAMILY	SSF55008	HMA, heavy metal-associated domain	coord: 23..52

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G017520	Cla013162	Watermelon (97103) v1	cgybwmB229
CsGy3G017520	Csa3G185130	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G017520	ClCG05G010850	Watermelon (Charleston Gray)	cgybwcgB214
CsGy3G017520	CSPI03G17490	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G017520	MELO3C020302.2	Melon (DHL92) v3.6.1	cgybmedB215
CsGy3G017520	CsaV3_3G017660	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G017520	Cla97C05G093160	Watermelon (97103) v2	cgybwmbB206
CsGy3G017520	Carg07440	Silver-seed gourd	carcgybB0758

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G017520	Wax gourd	cgybwgoB271
CsGy3G017520	Cucurbita maxima (Rimu)	cgybcmaB312
CsGy3G017520	Cucurbita moschata (Rifu)	cgybcmoB285
CsGy3G017520	Cucurbita pepo (Zucchini)	cgybcpeB401
CsGy3G017520	Bottle gourd (USVL1VR-Ls)	cgyblsiB198
CsGy3G017520	Melon (DHL92) v3.5.1	cgybmeB210
CsGy3G017520	Silver-seed gourd	carcgybB0190