CsGy3G016990 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G016990
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Remorin
Location	Chr3 : 13037099 .. 13037642 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCCGATGAGCCCAAGCAAATAGAGCCTGAAGAATCTCCCTCAGAGGCCCCTCCCCCTCCCCCTCCCCCGGCTGTGGCTGAGCCAACCAAAGACGACGTCGCAGAGGAGAAATCAATTATCCCCTTACTCCCACCGGAGGACGAGAAGCCGGCCGATGACTCCAAAGCTCTAGCAATCGTTGAAAGTAATTTATAATTATATATATATAAAGCTCTAAATTTATTTATTTTTCTCTAGAGTTAACTAATCTTATTGGGTTTATGTTTAATTTACAAATTTTTGTTATGGAATGATAGAGAGTGATGAAAAAGCAGAGGAAAAAGAGAAAGAAAGTGAAGGCTCAATTAATAGAGGTAATTAAATGGAGATATTATCAAATAATTAGTGTAAATATAATTAACCAAATGAATAATTGTGTATTAAATTCATTTTCATGTTTTGATGGTTATTAGATGCGGTACTTGCAAGAGTGGCAACAGAAAAGAGATTGTCACTCATCAAAGCTTGGGAAGAGAGTGAAAAATCAAAGGCAGAGAAT

mRNA sequence

ATGGCCTCCGATGAGCCCAAGCAAATAGAGCCTGAAGAATCTCCCTCAGAGGCCCCTCCCCCTCCCCCTCCCCCGGCTGTGGCTGAGCCAACCAAAGACGACGTCGCAGAGGAGAAATCAATTATCCCCTTACTCCCACCGGAGGACGAGAAGCCGGCCGATGACTCCAAAGCTCTAGCAATCGTTGAAAAGAGTGATGAAAAAGCAGAGGAAAAAGAGAAAGAAAGTGAAGGCTCAATTAATAGAGATGCGGTACTTGCAAGAGTGGCAACAGAAAAGAGATTGTCACTCATCAAAGCTTGGGAAGAGAGTGAAAAATCAAAGGCAGAGAAT

Coding sequence (CDS)

ATGGCCTCCGATGAGCCCAAGCAAATAGAGCCTGAAGAATCTCCCTCAGAGGCCCCTCCCCCTCCCCCTCCCCCGGCTGTGGCTGAGCCAACCAAAGACGACGTCGCAGAGGAGAAATCAATTATCCCCTTACTCCCACCGGAGGACGAGAAGCCGGCCGATGACTCCAAAGCTCTAGCAATCGTTGAAAAGAGTGATGAAAAAGCAGAGGAAAAAGAGAAAGAAAGTGAAGGCTCAATTAATAGAGATGCGGTACTTGCAAGAGTGGCAACAGAAAAGAGATTGTCACTCATCAAAGCTTGGGAAGAGAGTGAAAAATCAAAGGCAGAGAAT

Protein sequence

MASDEPKQIEPEESPSEAPPPPPPPAVAEPTKDDVAEEKSIIPLLPPEDEKPADDSKALAIVEKSDEKAEEKEKESEGSINRDAVLARVATEKRLSLIKAWEESEKSKAEN

Homology

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BLAST of CsGy3G016990 vs. NCBI nr
Match: XP_004140777.1 (PREDICTED: remorin [Cucumis sativus] >KGN57372.1 hypothetical protein Csa_3G182080 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 1.4e-09
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MASDEPKQIEPEESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MASDEPKQIEPEESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MASDEPKQIEPEESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXSEGSINRDAVLARVATEKRLSLIKAWEESEKSKAEN 112
           XXXXXXXXXXXXXXXSEGSINRDAVLARVATEKRLSLIKAWEESEKSKAEN
Sbjct: 61  XXXXXXXXXXXXXXXSEGSINRDAVLARVATEKRLSLIKAWEESEKSKAEN 111

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BLAST of CsGy3G016990 vs. NCBI nr
Match: XP_008439225.1 (PREDICTED: remorin [Cucumis melo])

HSP 1 Score: 68.9 bits (167), Expect = 1.2e-08
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 76  SEGSINRDAVLARVATEKRLSLIKAWEESEKSKAEN 112
           SEGSINRDAVLARVATEKRLSLIKAWEESEKSKAEN
Sbjct: 73  SEGSINRDAVLARVATEKRLSLIKAWEESEKSKAEN 108

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BLAST of CsGy3G016990 vs. NCBI nr
Match: XP_020239874.1 (remorin-like [Cajanus cajan] >KYP41953.1 Remorin [Cajanus cajan])

HSP 1 Score: 68.9 bits (167), Expect = 1.2e-08
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 76  SEGSINRDAVLARVATEKRLSLIKAWEESEKSKAEN 112
           SEGSINRDAVLARVATEKRLSLIKAWEESEKSKAEN
Sbjct: 71  SEGSINRDAVLARVATEKRLSLIKAWEESEKSKAEN 106

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BLAST of CsGy3G016990 vs. NCBI nr
Match: XP_017437848.1 (PREDICTED: remorin [Vigna angularis] >KOM54882.1 hypothetical protein LR48_Vigan10g077400 [Vigna angularis] >BAU02342.1 hypothetical protein VIGAN_11185100 [Vigna angularis var. angularis])

HSP 1 Score: 68.6 bits (166), Expect = 1.6e-08
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 76  SEGSINRDAVLARVATEKRLSLIKAWEESEKSKAEN 112
           SEGS+NRDAVLARVATEKRLSLIKAWEESEKSKAEN
Sbjct: 67  SEGSVNRDAVLARVATEKRLSLIKAWEESEKSKAEN 102

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BLAST of CsGy3G016990 vs. NCBI nr
Match: XP_014515418.1 (remorin [Vigna radiata var. radiata])

HSP 1 Score: 68.6 bits (166), Expect = 1.6e-08
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 76  SEGSINRDAVLARVATEKRLSLIKAWEESEKSKAEN 112
           SEGS+NRDAVLARVATEKRLSLIKAWEESEKSKAEN
Sbjct: 73  SEGSVNRDAVLARVATEKRLSLIKAWEESEKSKAEN 108

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BLAST of CsGy3G016990 vs. TAIR10
Match: AT5G23750.1 (Remorin family protein)

HSP 1 Score: 59.7 bits (143), Expect = 1.3e-09
Identity = 29/35 (82.86%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 77  EGSINRDAVLARVATEKRLSLIKAWEESEKSKAEN 112
           EGS+NRDAVLARV TEKR+SLIKAWEE+EK K EN
Sbjct: 76  EGSVNRDAVLARVETEKRMSLIKAWEEAEKCKVEN 110

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BLAST of CsGy3G016990 vs. TAIR10
Match: AT3G48940.1 (Remorin family protein)

HSP 1 Score: 51.6 bits (122), Expect = 3.6e-07
Identity = 24/34 (70.59%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 78  GSINRDAVLARVATEKRLSLIKAWEESEKSKAEN 112
           GS++RDAVL R+  +KR+SLIKAWEE+EKSK EN
Sbjct: 50  GSVHRDAVLVRLEQDKRISLIKAWEEAEKSKVEN 83

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BLAST of CsGy3G016990 vs. TAIR10
Match: AT2G45820.1 (Remorin family protein)

HSP 1 Score: 43.1 bits (100), Expect = 1.3e-04
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 0


Query: 76  SEGSINRDAVLARVATEKRLSLIKAWEESEKSK 109
           S GS +RD +LA +  EK+ S IKAWEESEKSK
Sbjct: 63  SSGSADRDVILADLEKEKKTSFIKAWEESEKSK 95

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BLAST of CsGy3G016990 vs. Swiss-Prot
Match: sp|P93788|REMO_SOLTU (Remorin OS=Solanum tuberosum OX=4113 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.5e-07
Identity = 29/31 (93.55%), Postives = 31/31 (100.00%), Query Frame = 0


Query: 78  GSINRDAVLARVATEKRLSLIKAWEESEKSK 109
           GSI+RDAVLARVATEKR+SLIKAWEESEKSK
Sbjct: 73  GSIDRDAVLARVATEKRVSLIKAWEESEKSK 103

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BLAST of CsGy3G016990 vs. TrEMBL
Match: tr|A0A0A0L9S3|A0A0A0L9S3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G182080 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 9.4e-10
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MASDEPKQIEPEESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MASDEPKQIEPEESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MASDEPKQIEPEESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXSEGSINRDAVLARVATEKRLSLIKAWEESEKSKAEN 112
           XXXXXXXXXXXXXXXSEGSINRDAVLARVATEKRLSLIKAWEESEKSKAEN
Sbjct: 61  XXXXXXXXXXXXXXXSEGSINRDAVLARVATEKRLSLIKAWEESEKSKAEN 111

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BLAST of CsGy3G016990 vs. TrEMBL
Match: tr|A0A1S3AXW2|A0A1S3AXW2_CUCME (remorin OS=Cucumis melo OX=3656 GN=LOC103484075 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 8.0e-09
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 76  SEGSINRDAVLARVATEKRLSLIKAWEESEKSKAEN 112
           SEGSINRDAVLARVATEKRLSLIKAWEESEKSKAEN
Sbjct: 73  SEGSINRDAVLARVATEKRLSLIKAWEESEKSKAEN 108

[Close]

BLAST of CsGy3G016990 vs. TrEMBL
Match: tr|A0A151RHH6|A0A151RHH6_CAJCA (Remorin OS=Cajanus cajan OX=3821 GN=KK1_036661 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 8.0e-09
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 76  SEGSINRDAVLARVATEKRLSLIKAWEESEKSKAEN 112
           SEGSINRDAVLARVATEKRLSLIKAWEESEKSKAEN
Sbjct: 71  SEGSINRDAVLARVATEKRLSLIKAWEESEKSKAEN 106

[Close]

BLAST of CsGy3G016990 vs. TrEMBL
Match: tr|A0A1S3VAP6|A0A1S3VAP6_VIGRR (remorin-like OS=Vigna radiata var. radiata OX=3916 GN=LOC106773218 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.0e-08
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 76  SEGSINRDAVLARVATEKRLSLIKAWEESEKSKAEN 112
           SEGS+NRDAVLARVATEKRLSLIKAWEESEKSKAEN
Sbjct: 73  SEGSVNRDAVLARVATEKRLSLIKAWEESEKSKAEN 108

[Close]

BLAST of CsGy3G016990 vs. TrEMBL
Match: tr|A0A0L9VIY8|A0A0L9VIY8_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan10g077400 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.0e-08
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 76  SEGSINRDAVLARVATEKRLSLIKAWEESEKSKAEN 112
           SEGS+NRDAVLARVATEKRLSLIKAWEESEKSKAEN
Sbjct: 67  SEGSVNRDAVLARVATEKRLSLIKAWEESEKSKAEN 102

The following BLAST results are available for this feature:

BLAST of CsGy3G016990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140777.1	1.4e-09	100.00	PREDICTED: remorin [Cucumis sativus] >KGN57372.1 hypothetical protein Csa_3G1820...	[more]
XP_008439225.1	1.2e-08	100.00	PREDICTED: remorin [Cucumis melo]	[more]
XP_020239874.1	1.2e-08	100.00	remorin-like [Cajanus cajan] >KYP41953.1 Remorin [Cajanus cajan]	[more]
XP_017437848.1	1.6e-08	97.22	PREDICTED: remorin [Vigna angularis] >KOM54882.1 hypothetical protein LR48_Vigan...	[more]
XP_014515418.1	1.6e-08	97.22	remorin [Vigna radiata var. radiata]	[more]

BLAST of CsGy3G016990 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G23750.1	1.3e-09	82.86	Remorin family protein	[more]
AT3G48940.1	3.6e-07	70.59	Remorin family protein	[more]
AT2G45820.1	1.3e-04	63.64	Remorin family protein	[more]

BLAST of CsGy3G016990 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P93788\|REMO_SOLTU	1.5e-07	93.55	Remorin OS=Solanum tuberosum OX=4113 PE=1 SV=1	[more]

BLAST of CsGy3G016990 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L9S3\|A0A0A0L9S3_CUCSA	9.4e-10	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G182080 PE=4 SV=1	[more]
tr\|A0A1S3AXW2\|A0A1S3AXW2_CUCME	8.0e-09	100.00	remorin OS=Cucumis melo OX=3656 GN=LOC103484075 PE=4 SV=1	[more]
tr\|A0A151RHH6\|A0A151RHH6_CAJCA	8.0e-09	100.00	Remorin OS=Cajanus cajan OX=3821 GN=KK1_036661 PE=4 SV=1	[more]
tr\|A0A1S3VAP6\|A0A1S3VAP6_VIGRR	1.0e-08	97.22	remorin-like OS=Vigna radiata var. radiata OX=3916 GN=LOC106773218 PE=4 SV=1	[more]
tr\|A0A0L9VIY8\|A0A0L9VIY8_PHAAN	1.0e-08	97.22	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan10g077400 PE...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005518	Remorin_N

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G016990.1	CsGy3G016990.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005518	Remorin, N-terminal	PFAM	PF03766	Remorin_N	coord: 33..89 e-value: 6.3E-21 score: 74.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..29
None	No IPR available	PANTHER	PTHR31775	FAMILY NOT NAMED	coord: 1..111
None	No IPR available	PANTHER	PTHR31775:SF5	REMORIN FAMILY PROTEIN-RELATED	coord: 1..111

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G016990	Csa3G182080	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G016990	MELO3C006904	Melon (DHL92) v3.5.1	cgybmeB200
CsGy3G016990	CmaCh18G012450	Cucurbita maxima (Rimu)	cgybcmaB352
CsGy3G016990	CmoCh18G012680	Cucurbita moschata (Rifu)	cgybcmoB324
CsGy3G016990	Lsi05G012280	Bottle gourd (USVL1VR-Ls)	cgyblsiB197
CsGy3G016990	MELO3C006904.2	Melon (DHL92) v3.6.1	cgybmedB201
CsGy3G016990	Cla97C05G090070	Watermelon (97103) v2	cgybwmbB196
CsGy3G016990	Carg08416	Silver-seed gourd	carcgybB0707
CsGy3G016990	Carg22099	Silver-seed gourd	carcgybB0733

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G016990	Cucumber (Gy14) v2	cgybcgybB091
CsGy3G016990	Cucurbita maxima (Rimu)	cgybcmaB342
CsGy3G016990	Cucurbita maxima (Rimu)	cgybcmaB394
CsGy3G016990	Cucurbita maxima (Rimu)	cgybcmaB399
CsGy3G016990	Cucurbita maxima (Rimu)	cgybcmaB463
CsGy3G016990	Cucurbita moschata (Rifu)	cgybcmoB312
CsGy3G016990	Cucurbita moschata (Rifu)	cgybcmoB371
CsGy3G016990	Cucurbita moschata (Rifu)	cgybcmoB432
CsGy3G016990	Cucurbita pepo (Zucchini)	cgybcpeB287
CsGy3G016990	Cucurbita pepo (Zucchini)	cgybcpeB314
CsGy3G016990	Cucurbita pepo (Zucchini)	cgybcpeB327
CsGy3G016990	Cucurbita pepo (Zucchini)	cgybcpeB427
CsGy3G016990	Cucumber (Chinese Long) v2	cgybcuB128
CsGy3G016990	Bottle gourd (USVL1VR-Ls)	cgyblsiB141
CsGy3G016990	Melon (DHL92) v3.5.1	cgybmeB141
CsGy3G016990	Melon (DHL92) v3.6.1	cgybmedB137
CsGy3G016990	Watermelon (Charleston Gray)	cgybwcgB191
CsGy3G016990	Watermelon (Charleston Gray)	cgybwcgB203
CsGy3G016990	Watermelon (97103) v1	cgybwmB217
CsGy3G016990	Watermelon (97103) v1	cgybwmB246
CsGy3G016990	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G016990	Wild cucumber (PI 183967)	cgybcpiB130
CsGy3G016990	Silver-seed gourd	carcgybB0906
CsGy3G016990	Silver-seed gourd	carcgybB0976
CsGy3G016990	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G016990	Cucumber (Chinese Long) v3	cgybcucB135
CsGy3G016990	Watermelon (97103) v2	cgybwmbB172
CsGy3G016990	Watermelon (97103) v2	cgybwmbB216
CsGy3G016990	Wax gourd	cgybwgoB241
CsGy3G016990	Wax gourd	cgybwgoB274
CsGy3G016990	Wax gourd	cgybwgoB288