CsGy3G001230 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G001230
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr3 : 910590 .. 911000 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAAGACAAGCAACTCAACTGGAGCACTATTACTGGTGGTGATGCTCTCGCTACTTGTGGTAGACTCATTGGCCTTAGTTCATCCTTCTATAATAGACGACAATAGCATATCATCGATATGGAGTGGTTGGATAGATAAAGATAGAGCACCTATTCTAGCATCGTGTTTGTACCTGATGAAGAGTGATAAATGCCAAGTGGAACTTTATAATTATTACTTTAATAAAAGCAAGAAGGAAGTGGATCTAAGTTGTTGCGTATATGTTAATTACATTGGCGAGGAATGTGCTGCATCATTTGAGTCTTGGTTCTCATCTCTTGGTTTCAAAGCCTTAAAGCCTAATCCAATGAAGCTTTACAACAATTGTTTTAAGAGACTGACTGTTCCAGCACCACCGACACTTTAA

mRNA sequence

ATGGGAAAGACAAGCAACTCAACTGGAGCACTATTACTGGTGGTGATGCTCTCGCTACTTGTGGTAGACTCATTGGCCTTAGTTCATCCTTCTATAATAGACGACAATAGCATATCATCGATATGGAGTGGTTGGATAGATAAAGATAGAGCACCTATTCTAGCATCGTGTTTGTACCTGATGAAGAGTGATAAATGCCAAGTGGAACTTTATAATTATTACTTTAATAAAAGCAAGAAGGAAGTGGATCTAAGTTGTTGCGTATATGTTAATTACATTGGCGAGGAATGTGCTGCATCATTTGAGTCTTGGTTCTCATCTCTTGGTTTCAAAGCCTTAAAGCCTAATCCAATGAAGCTTTACAACAATTGTTTTAAGAGACTGACTGTTCCAGCACCACCGACACTTTAA

Coding sequence (CDS)

ATGGGAAAGACAAGCAACTCAACTGGAGCACTATTACTGGTGGTGATGCTCTCGCTACTTGTGGTAGACTCATTGGCCTTAGTTCATCCTTCTATAATAGACGACAATAGCATATCATCGATATGGAGTGGTTGGATAGATAAAGATAGAGCACCTATTCTAGCATCGTGTTTGTACCTGATGAAGAGTGATAAATGCCAAGTGGAACTTTATAATTATTACTTTAATAAAAGCAAGAAGGAAGTGGATCTAAGTTGTTGCGTATATGTTAATTACATTGGCGAGGAATGTGCTGCATCATTTGAGTCTTGGTTCTCATCTCTTGGTTTCAAAGCCTTAAAGCCTAATCCAATGAAGCTTTACAACAATTGTTTTAAGAGACTGACTGTTCCAGCACCACCGACACTTTAA

Protein sequence

MGKTSNSTGALLLVVMLSLLVVDSLALVHPSIIDDNSISSIWSGWIDKDRAPILASCLYLMKSDKCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKLYNNCFKRLTVPAPPTL

Homology

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BLAST of CsGy3G001230 vs. NCBI nr
Match: KGN55722.1 (hypothetical protein Csa_3G008300 [Cucumis sativus])

HSP 1 Score: 275.0 bits (702), Expect = 1.4e-70
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MGKTSNSTGALLLVVMLSLLVVDSLALVHPSIIDDNSISSIWSGWIDKDRAPILASCLYL 60
           MGKTSNSTGALLLVVMLSLLVVDSLALVHPSIIDDN ISSIWSGWIDKDRAPILASCLYL
Sbjct: 1   MGKTSNSTGALLLVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYL 60

Query: 61  MKSDKCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKL 120
           MKSDKCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKL
Sbjct: 61  MKSDKCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKL 120

Query: 121 YNNCFKRLTVPAPPTL 137
           YNNCFKRLTVPAPPTL
Sbjct: 121 YNNCFKRLTVPAPPTL 136

[Close]

BLAST of CsGy3G001230 vs. NCBI nr
Match: KGN50979.1 (hypothetical protein Csa_5G381840 [Cucumis sativus])

HSP 1 Score: 208.8 bits (530), Expect = 1.2e-50
Identity = 99/132 (75.00%), Postives = 115/132 (87.12%), Query Frame = 0


Query: 5   SNSTGALLLVVMLSLLVVDSLALVHPSIIDDNSISSIWSGWIDKDRAPILASCLYLMKSD 64
           +NST  LL+VVMLSLLVVDSLALV PS +DDN ISSIWS W+D+DRAP LA CL++M+S+
Sbjct: 2   NNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRSE 61

Query: 65  KCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKLYNNC 124
           KCQVELYNYYFN SKKE+DLSCCVYVNY+G++CAA+FE WFS    +ALKPNPMK+YNNC
Sbjct: 62  KCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNNC 121

Query: 125 FKRLTVPAPPTL 137
           FKRLT PAP  L
Sbjct: 122 FKRLTFPAPTPL 133

[Close]

BLAST of CsGy3G001230 vs. NCBI nr
Match: KGN46111.1 (hypothetical protein Csa_6G054340 [Cucumis sativus])

HSP 1 Score: 133.7 bits (335), Expect = 4.9e-28
Identity = 67/131 (51.15%), Postives = 92/131 (70.23%), Query Frame = 0


Query: 5   SNSTGALLLVVMLSLLVVDSLALVHPSIIDDNSISSIWSGWIDKDRAPILASCLYLMKSD 64
           +N T A+  +V+L L  ++   LV  S +D++  SSIW+ W+D+DRA  L  CL  M+S 
Sbjct: 2   ANKTNAMRAMVIL-LSAINLAKLVQSSGVDEDYNSSIWNDWLDEDRAFTLRPCLDRMRSA 61

Query: 65  KCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKLYNNC 124
           KCQVELYNYYFN SKKE+DL+CCV+V  +G++CA +F  W+   G +  +PNPMK+YNNC
Sbjct: 62  KCQVELYNYYFNISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNNC 121

Query: 125 FKRLTVPAPPT 136
             RL+ P PPT
Sbjct: 122 ATRLSAP-PPT 130

[Close]

BLAST of CsGy3G001230 vs. NCBI nr
Match: KGN46140.1 (hypothetical protein Csa_6G056570 [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 2.8e-07
Identity = 32/48 (66.67%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 3  KTSNSTGALLLVVMLSLLVVDSLALVHPSIIDDNSISSIWSGWIDKDR 51
          K S STGALL++ +LSLLVVDSLALV PS +DD+ IS IWS W+D++R
Sbjct: 4  KASYSTGALLVMTVLSLLVVDSLALVQPSTVDDDGISPIWSDWVDENR 51

[Close]

BLAST of CsGy3G001230 vs. TrEMBL
Match: tr|A0A0A0L535|A0A0A0L535_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G008300 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 9.0e-71
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MGKTSNSTGALLLVVMLSLLVVDSLALVHPSIIDDNSISSIWSGWIDKDRAPILASCLYL 60
           MGKTSNSTGALLLVVMLSLLVVDSLALVHPSIIDDN ISSIWSGWIDKDRAPILASCLYL
Sbjct: 1   MGKTSNSTGALLLVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYL 60

Query: 61  MKSDKCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKL 120
           MKSDKCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKL
Sbjct: 61  MKSDKCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKL 120

Query: 121 YNNCFKRLTVPAPPTL 137
           YNNCFKRLTVPAPPTL
Sbjct: 121 YNNCFKRLTVPAPPTL 136

[Close]

BLAST of CsGy3G001230 vs. TrEMBL
Match: tr|A0A0A0KQ41|A0A0A0KQ41_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G381840 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 7.9e-51
Identity = 99/132 (75.00%), Postives = 115/132 (87.12%), Query Frame = 0


Query: 5   SNSTGALLLVVMLSLLVVDSLALVHPSIIDDNSISSIWSGWIDKDRAPILASCLYLMKSD 64
           +NST  LL+VVMLSLLVVDSLALV PS +DDN ISSIWS W+D+DRAP LA CL++M+S+
Sbjct: 2   NNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRSE 61

Query: 65  KCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKLYNNC 124
           KCQVELYNYYFN SKKE+DLSCCVYVNY+G++CAA+FE WFS    +ALKPNPMK+YNNC
Sbjct: 62  KCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNNC 121

Query: 125 FKRLTVPAPPTL 137
           FKRLT PAP  L
Sbjct: 122 FKRLTFPAPTPL 133

[Close]

BLAST of CsGy3G001230 vs. TrEMBL
Match: tr|A0A0A0KEB8|A0A0A0KEB8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G054340 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.2e-28
Identity = 67/131 (51.15%), Postives = 92/131 (70.23%), Query Frame = 0


Query: 5   SNSTGALLLVVMLSLLVVDSLALVHPSIIDDNSISSIWSGWIDKDRAPILASCLYLMKSD 64
           +N T A+  +V+L L  ++   LV  S +D++  SSIW+ W+D+DRA  L  CL  M+S 
Sbjct: 2   ANKTNAMRAMVIL-LSAINLAKLVQSSGVDEDYNSSIWNDWLDEDRAFTLRPCLDRMRSA 61

Query: 65  KCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKLYNNC 124
           KCQVELYNYYFN SKKE+DL+CCV+V  +G++CA +F  W+   G +  +PNPMK+YNNC
Sbjct: 62  KCQVELYNYYFNISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNNC 121

Query: 125 FKRLTVPAPPT 136
             RL+ P PPT
Sbjct: 122 ATRLSAP-PPT 130

[Close]

BLAST of CsGy3G001230 vs. TrEMBL
Match: tr|A0A0A0K8R6|A0A0A0K8R6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G056570 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.8e-07
Identity = 32/48 (66.67%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 3  KTSNSTGALLLVVMLSLLVVDSLALVHPSIIDDNSISSIWSGWIDKDR 51
          K S STGALL++ +LSLLVVDSLALV PS +DD+ IS IWS W+D++R
Sbjct: 4  KASYSTGALLVMTVLSLLVVDSLALVQPSTVDDDGISPIWSDWVDENR 51

The following BLAST results are available for this feature:

BLAST of CsGy3G001230 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55722.1	1.4e-70	99.26	hypothetical protein Csa_3G008300 [Cucumis sativus]	[more]
KGN50979.1	1.2e-50	75.00	hypothetical protein Csa_5G381840 [Cucumis sativus]	[more]
KGN46111.1	4.9e-28	51.15	hypothetical protein Csa_6G054340 [Cucumis sativus]	[more]
KGN46140.1	2.8e-07	66.67	hypothetical protein Csa_6G056570 [Cucumis sativus]	[more]

BLAST of CsGy3G001230 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy3G001230 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy3G001230 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L535\|A0A0A0L535_CUCSA	9.0e-71	99.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G008300 PE=4 SV=1	[more]
tr\|A0A0A0KQ41\|A0A0A0KQ41_CUCSA	7.9e-51	75.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G381840 PE=4 SV=1	[more]
tr\|A0A0A0KEB8\|A0A0A0KEB8_CUCSA	3.2e-28	51.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G054340 PE=4 SV=1	[more]
tr\|A0A0A0K8R6\|A0A0A0K8R6_CUCSA	1.8e-07	66.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G056570 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008502	Prolamin-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G001230.1	CsGy3G001230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008502	Prolamin-like domain	PFAM	PF05617	Prolamin_like	coord: 57..124 e-value: 1.7E-6 score: 28.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G001230	Csa3G008300	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G001230	CSPI03G01340	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G001230	CsaV3_3G001360	Cucumber (Chinese Long) v3	cgybcucB117

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G001230	Cucumber (Gy14) v2	cgybcgybB080
CsGy3G001230	Cucurbita maxima (Rimu)	cgybcmaB339
CsGy3G001230	Cucurbita maxima (Rimu)	cgybcmaB378
CsGy3G001230	Cucurbita maxima (Rimu)	cgybcmaB398
CsGy3G001230	Cucurbita maxima (Rimu)	cgybcmaB429
CsGy3G001230	Cucurbita moschata (Rifu)	cgybcmoB310
CsGy3G001230	Cucurbita moschata (Rifu)	cgybcmoB351
CsGy3G001230	Cucurbita moschata (Rifu)	cgybcmoB370
CsGy3G001230	Cucurbita moschata (Rifu)	cgybcmoB403
CsGy3G001230	Cucurbita pepo (Zucchini)	cgybcpeB325
CsGy3G001230	Cucurbita pepo (Zucchini)	cgybcpeB334
CsGy3G001230	Cucurbita pepo (Zucchini)	cgybcpeB426
CsGy3G001230	Cucurbita pepo (Zucchini)	cgybcpeB456
CsGy3G001230	Cucumber (Chinese Long) v2	cgybcuB112
CsGy3G001230	Bottle gourd (USVL1VR-Ls)	cgyblsiB134
CsGy3G001230	Bottle gourd (USVL1VR-Ls)	cgyblsiB217
CsGy3G001230	Melon (DHL92) v3.5.1	cgybmeB188
CsGy3G001230	Melon (DHL92) v3.5.1	cgybmeB209
CsGy3G001230	Melon (DHL92) v3.6.1	cgybmedB189
CsGy3G001230	Melon (DHL92) v3.6.1	cgybmedB202
CsGy3G001230	Watermelon (Charleston Gray)	cgybwcgB164
CsGy3G001230	Watermelon (Charleston Gray)	cgybwcgB174
CsGy3G001230	Watermelon (97103) v1	cgybwmB171
CsGy3G001230	Watermelon (97103) v1	cgybwmB188
CsGy3G001230	Wild cucumber (PI 183967)	cgybcpiB112
CsGy3G001230	Silver-seed gourd	carcgybB0775
CsGy3G001230	Silver-seed gourd	carcgybB0951
CsGy3G001230	Silver-seed gourd	carcgybB1033
CsGy3G001230	Cucumber (Chinese Long) v3	cgybcucB118
CsGy3G001230	Watermelon (97103) v2	cgybwmbB174
CsGy3G001230	Watermelon (97103) v2	cgybwmbB243
CsGy3G001230	Wax gourd	cgybwgoB295
CsGy3G001230	Wax gourd	cgybwgoB326