CSPI03G01340 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G01340
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr3 : 929868 .. 930278 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAAGACAAGCAACTCAATTGGAGCACTATTAGTGGTGGTGATGCTCTCGCTACTTGTGGTAGACTCGTTGGCCTTAGTTCATCCTTCTATAATAGACGACAATGGCATATCATCGATATGGAGTGGTTGGATAGATAAAGATAGAGCACCTATTCTAGCATCGTGTTTGTACCTGATGAAGAGTGATAAATGCCAAGTGGAACTTTATAATTATTACTTTAATAAAAGCAATAAGGAAGTGGATCTAAGTTGTTGCGTGTATGTTAATTACATTGGCGAGGAATGTGCTGCATCATTTGAGTCTTGGTTCTCATCTCTTGGTTTCAAAGCCTTAAAGCCTAATCCAATGAAGCTTTACAACAATTGTTTTAAGAGACTGACTGTTCCAGCACCACCGACACTTTAA

mRNA sequence

ATGGGAAAGACAAGCAACTCAATTGGAGCACTATTAGTGGTGGTGATGCTCTCGCTACTTGTGGTAGACTCGTTGGCCTTAGTTCATCCTTCTATAATAGACGACAATGGCATATCATCGATATGGAGTGGTTGGATAGATAAAGATAGAGCACCTATTCTAGCATCGTGTTTGTACCTGATGAAGAGTGATAAATGCCAAGTGGAACTTTATAATTATTACTTTAATAAAAGCAATAAGGAAGTGGATCTAAGTTGTTGCGTGTATGTTAATTACATTGGCGAGGAATGTGCTGCATCATTTGAGTCTTGGTTCTCATCTCTTGGTTTCAAAGCCTTAAAGCCTAATCCAATGAAGCTTTACAACAATTGTTTTAAGAGACTGACTGTTCCAGCACCACCGACACTTTAA

Coding sequence (CDS)

ATGGGAAAGACAAGCAACTCAATTGGAGCACTATTAGTGGTGGTGATGCTCTCGCTACTTGTGGTAGACTCGTTGGCCTTAGTTCATCCTTCTATAATAGACGACAATGGCATATCATCGATATGGAGTGGTTGGATAGATAAAGATAGAGCACCTATTCTAGCATCGTGTTTGTACCTGATGAAGAGTGATAAATGCCAAGTGGAACTTTATAATTATTACTTTAATAAAAGCAATAAGGAAGTGGATCTAAGTTGTTGCGTGTATGTTAATTACATTGGCGAGGAATGTGCTGCATCATTTGAGTCTTGGTTCTCATCTCTTGGTTTCAAAGCCTTAAAGCCTAATCCAATGAAGCTTTACAACAATTGTTTTAAGAGACTGACTGTTCCAGCACCACCGACACTTTAA

Homology

[Close]

BLAST of CSPI03G01340 vs. TrEMBL
Match: A0A0A0L535_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G008300 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 1.9e-70
Identity = 133/136 (97.79%), Postives = 134/136 (98.53%), Query Frame = 1


Query: 1   MGKTSNSIGALLVVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYL 60
           MGKTSNS GALL+VVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYL
Sbjct: 1   MGKTSNSTGALLLVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYL 60

Query: 61  MKSDKCQVELYNYYFNKSNKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKL 120
           MKSDKCQVELYNYYFNKS KEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKL
Sbjct: 61  MKSDKCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKL 120

Query: 121 YNNCFKRLTVPAPPTL 137
           YNNCFKRLTVPAPPTL
Sbjct: 121 YNNCFKRLTVPAPPTL 136

[Close]

BLAST of CSPI03G01340 vs. TrEMBL
Match: A0A0A0KQ41_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G381840 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 3.3e-51
Identity = 99/132 (75.00%), Postives = 114/132 (86.36%), Query Frame = 1


Query: 5   SNSIGALLVVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYLMKSD 64
           +NS   LLVVVMLSLLVVDSLALV PS +DDNGISSIWS W+D+DRAP LA CL++M+S+
Sbjct: 2   NNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRSE 61

Query: 65  KCQVELYNYYFNKSNKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKLYNNC 124
           KCQVELYNYYFN S KE+DLSCCVYVNY+G++CAA+FE WFS    +ALKPNPMK+YNNC
Sbjct: 62  KCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNNC 121

Query: 125 FKRLTVPAPPTL 137
           FKRLT PAP  L
Sbjct: 122 FKRLTFPAPTPL 133

[Close]

BLAST of CSPI03G01340 vs. TrEMBL
Match: A0A0A0KEB8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G054340 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.5e-27
Identity = 65/131 (49.62%), Postives = 90/131 (68.70%), Query Frame = 1


Query: 5   SNSIGALLVVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYLMKSD 64
           +N   A+  +V+L L  ++   LV  S +D++  SSIW+ W+D+DRA  L  CL  M+S 
Sbjct: 2   ANKTNAMRAMVIL-LSAINLAKLVQSSGVDEDYNSSIWNDWLDEDRAFTLRPCLDRMRSA 61

Query: 65  KCQVELYNYYFNKSNKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKLYNNC 124
           KCQVELYNYYFN S KE+DL+CCV+V  +G++CA +F  W+   G +  +PNPMK+YNNC
Sbjct: 62  KCQVELYNYYFNISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNNC 121

Query: 125 FKRLTVPAPPT 136
             RL+ P PPT
Sbjct: 122 ATRLSAP-PPT 130

[Close]

BLAST of CSPI03G01340 vs. TrEMBL
Match: A0A0A0K8R6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G056570 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.4e-08
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 1


Query: 3  KTSNSIGALLVVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDR 51
          K S S GALLV+ +LSLLVVDSLALV PS +DD+GIS IWS W+D++R
Sbjct: 4  KASYSTGALLVMTVLSLLVVDSLALVQPSTVDDDGISPIWSDWVDENR 51

[Close]

BLAST of CSPI03G01340 vs. NCBI nr
Match: gi|700200589|gb|KGN55722.1| (hypothetical protein Csa_3G008300 [Cucumis sativus])

HSP 1 Score: 273.1 bits (697), Expect = 2.7e-70
Identity = 133/136 (97.79%), Postives = 134/136 (98.53%), Query Frame = 1


Query: 1   MGKTSNSIGALLVVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYL 60
           MGKTSNS GALL+VVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYL
Sbjct: 1   MGKTSNSTGALLLVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYL 60

Query: 61  MKSDKCQVELYNYYFNKSNKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKL 120
           MKSDKCQVELYNYYFNKS KEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKL
Sbjct: 61  MKSDKCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKL 120

Query: 121 YNNCFKRLTVPAPPTL 137
           YNNCFKRLTVPAPPTL
Sbjct: 121 YNNCFKRLTVPAPPTL 136

[Close]

BLAST of CSPI03G01340 vs. NCBI nr
Match: gi|700195802|gb|KGN50979.1| (hypothetical protein Csa_5G381840 [Cucumis sativus])

HSP 1 Score: 209.1 bits (531), Expect = 4.7e-51
Identity = 99/132 (75.00%), Postives = 114/132 (86.36%), Query Frame = 1


Query: 5   SNSIGALLVVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYLMKSD 64
           +NS   LLVVVMLSLLVVDSLALV PS +DDNGISSIWS W+D+DRAP LA CL++M+S+
Sbjct: 2   NNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRSE 61

Query: 65  KCQVELYNYYFNKSNKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKLYNNC 124
           KCQVELYNYYFN S KE+DLSCCVYVNY+G++CAA+FE WFS    +ALKPNPMK+YNNC
Sbjct: 62  KCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNNC 121

Query: 125 FKRLTVPAPPTL 137
           FKRLT PAP  L
Sbjct: 122 FKRLTFPAPTPL 133

[Close]

BLAST of CSPI03G01340 vs. NCBI nr
Match: gi|700190907|gb|KGN46111.1| (hypothetical protein Csa_6G054340 [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 2.1e-27
Identity = 65/131 (49.62%), Postives = 90/131 (68.70%), Query Frame = 1


Query: 5   SNSIGALLVVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYLMKSD 64
           +N   A+  +V+L L  ++   LV  S +D++  SSIW+ W+D+DRA  L  CL  M+S 
Sbjct: 2   ANKTNAMRAMVIL-LSAINLAKLVQSSGVDEDYNSSIWNDWLDEDRAFTLRPCLDRMRSA 61

Query: 65  KCQVELYNYYFNKSNKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKLYNNC 124
           KCQVELYNYYFN S KE+DL+CCV+V  +G++CA +F  W+   G +  +PNPMK+YNNC
Sbjct: 62  KCQVELYNYYFNISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNNC 121

Query: 125 FKRLTVPAPPT 136
             RL+ P PPT
Sbjct: 122 ATRLSAP-PPT 130

[Close]

BLAST of CSPI03G01340 vs. NCBI nr
Match: gi|700190936|gb|KGN46140.1| (hypothetical protein Csa_6G056570 [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 4.9e-08
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 1


Query: 3  KTSNSIGALLVVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDR 51
          K S S GALLV+ +LSLLVVDSLALV PS +DD+GIS IWS W+D++R
Sbjct: 4  KASYSTGALLVMTVLSLLVVDSLALVQPSTVDDDGISPIWSDWVDENR 51

The following BLAST results are available for this feature:

BLAST of CSPI03G01340 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G01340 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L535_CUCSA	1.9e-70	97.79	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G008300 PE=4 SV=1	[more]
A0A0A0KQ41_CUCSA	3.3e-51	75.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G381840 PE=4 SV=1	[more]
A0A0A0KEB8_CUCSA	1.5e-27	49.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G054340 PE=4 SV=1	[more]
A0A0A0K8R6_CUCSA	3.4e-08	68.75	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G056570 PE=4 SV=1	[more]

BLAST of CSPI03G01340 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI03G01340 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700200589\|gb\|KGN55722.1\|	2.7e-70	97.79	hypothetical protein Csa_3G008300 [Cucumis sativus]	[more]
gi\|700195802\|gb\|KGN50979.1\|	4.7e-51	75.00	hypothetical protein Csa_5G381840 [Cucumis sativus]	[more]
gi\|700190907\|gb\|KGN46111.1\|	2.1e-27	49.62	hypothetical protein Csa_6G054340 [Cucumis sativus]	[more]
gi\|700190936\|gb\|KGN46140.1\|	4.9e-08	68.75	hypothetical protein Csa_6G056570 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008502	Prolamin-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G01340.1	CSPI03G01340.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008502	Prolamin-like domain	PFAM	PF05617	Prolamin_like	coord: 57..124 score: 2.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G01340	Csa3G008300	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G01340	CsaV3_3G001360	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G01340	CsGy3G001230	Cucumber (Gy14) v2	cgybcpiB110

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G01340	Cucurbita maxima (Rimu)	cmacpiB519
CSPI03G01340	Cucurbita maxima (Rimu)	cmacpiB608
CSPI03G01340	Cucurbita maxima (Rimu)	cmacpiB829
CSPI03G01340	Cucurbita moschata (Rifu)	cmocpiB323
CSPI03G01340	Cucurbita moschata (Rifu)	cmocpiB509
CSPI03G01340	Cucurbita moschata (Rifu)	cmocpiB597
CSPI03G01340	Cucurbita moschata (Rifu)	cmocpiB817
CSPI03G01340	Cucumber (Chinese Long) v2	cpicuB122
CSPI03G01340	Melon (DHL92) v3.5.1	cpimeB218
CSPI03G01340	Melon (DHL92) v3.5.1	cpimeB240
CSPI03G01340	Watermelon (Charleston Gray)	cpiwcgB180
CSPI03G01340	Watermelon (Charleston Gray)	cpiwcgB190
CSPI03G01340	Watermelon (97103) v1	cpiwmB184
CSPI03G01340	Watermelon (97103) v1	cpiwmB200
CSPI03G01340	Cucurbita pepo (Zucchini)	cpecpiB215
CSPI03G01340	Cucurbita pepo (Zucchini)	cpecpiB245
CSPI03G01340	Cucurbita pepo (Zucchini)	cpecpiB720
CSPI03G01340	Cucurbita pepo (Zucchini)	cpecpiB865
CSPI03G01340	Bottle gourd (USVL1VR-Ls)	cpilsiB147
CSPI03G01340	Bottle gourd (USVL1VR-Ls)	cpilsiB227
CSPI03G01340	Melon (DHL92) v3.6.1	cpimedB213
CSPI03G01340	Melon (DHL92) v3.6.1	cpimedB225
CSPI03G01340	Cucumber (Gy14) v2	cgybcpiB113
CSPI03G01340	Silver-seed gourd	carcpiB0818
CSPI03G01340	Silver-seed gourd	carcpiB1001
CSPI03G01340	Silver-seed gourd	carcpiB1085
CSPI03G01340	Cucumber (Chinese Long) v3	cpicucB146
CSPI03G01340	Watermelon (97103) v2	cpiwmbB184
CSPI03G01340	Watermelon (97103) v2	cpiwmbB261
CSPI03G01340	Wax gourd	cpiwgoB308
CSPI03G01340	Wax gourd	cpiwgoB339
CSPI03G01340	Wild cucumber (PI 183967)	cpicpiB100
CSPI03G01340	Cucumber (Gy14) v1	cgycpiB474
CSPI03G01340	Cucumber (Gy14) v1	cgycpiB484
CSPI03G01340	Cucurbita maxima (Rimu)	cmacpiB332