CsGy2G015220 (gene) Cucumber (Gy14) v2

Overview
NameCsGy2G015220
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr2 : 15155684 .. 15156220 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAATTTTAGCTTTTTAATATTGCAAAAAATTATGGTTCTTAAGAAGACATTAGCATTTTCATGCAATAATCTTCTCCAGCTATTGGCCTTCATCTTTCTCTTTTTTCTTCTCATCACAACCACAGGTATTGCTTGTTTATTTCGCTCTCCAATTATTTTTTAGGAATTGAACAGTAACTTATTGTTATTGCTTGTTGTACGTTTTAGGTTCTTCAGCAAGGAGTTTAGTAGAAGGGAGGAGTCGAAATGACGACGATCCTTACGTCAAAAACCATAGCGGAGTGATTGGAAACGACTTGGTGACAATGGATTATACTCCGGCGAGGAAGAACCATCCAATTCATAACTAGCAAAAATTACTAATAACTATTGGTAATAATGTTTTTAGAGTATGTTTGTTTGGAATTTGAATCGGAAGAAATTATATATGTTTTCTTCTTTGTATTTTCCTTTATTCATAGAGAAAGTTAAAGTAAAAACCTAAGCTTGAATGCTAAACATTATCTATCTATATATGATATGAAATGATATTTTCT

mRNA sequence

CAAATTTTAGCTTTTTAATATTGCAAAAAATTATGGTTCTTAAGAAGACATTAGCATTTTCATGCAATAATCTTCTCCAGCTATTGGCCTTCATCTTTCTCTTTTTTCTTCTCATCACAACCACAGGTTCTTCAGCAAGGAGTTTAGTAGAAGGGAGGAGTCGAAATGACGACGATCCTTACGTCAAAAACCATAGCGGAGTGATTGGAAACGACTTGGTGACAATGGATTATACTCCGGCGAGGAAGAACCATCCAATTCATAACTAGCAAAAATTACTAATAACTATTGGTAATAATGTTTTTAGAGTATGTTTGTTTGGAATTTGAATCGGAAGAAATTATATATGTTTTCTTCTTTGTATTTTCCTTTATTCATAGAGAAAGTTAAAGTAAAAACCTAAGCTTGAATGCTAAACATTATCTATCTATATATGATATGAAATGATATTTTCT

Coding sequence (CDS)

ATGGTTCTTAAGAAGACATTAGCATTTTCATGCAATAATCTTCTCCAGCTATTGGCCTTCATCTTTCTCTTTTTTCTTCTCATCACAACCACAGGTTCTTCAGCAAGGAGTTTAGTAGAAGGGAGGAGTCGAAATGACGACGATCCTTACGTCAAAAACCATAGCGGAGTGATTGGAAACGACTTGGTGACAATGGATTATACTCCGGCGAGGAAGAACCATCCAATTCATAACTAG

Protein sequence

MVLKKTLAFSCNNLLQLLAFIFLFFLLITTTGSSARSLVEGRSRNDDDPYVKNHSGVIGNDLVTMDYTPARKNHPIHN
Homology
[Close]
BLAST of CsGy2G015220 vs. NCBI nr
Match: KGN62099.1 (hypothetical protein Csa_2G297230 [Cucumis sativus])

HSP 1 Score: 139.8 bits (351), Expect = 3.9e-30
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1  MVLKKTLAFSCNNLLQLLAFIFLXXXXXXXXGSSARSLVEGRSRNDDDPYVKNHSGVIGN 60
          MVLKKTLAFSCNNLLQLLAFIFLXXXXXXXXGSSARSLVEGRSRNDDDPYVKNHSGVIGN
Sbjct: 1  MVLKKTLAFSCNNLLQLLAFIFLXXXXXXXXGSSARSLVEGRSRNDDDPYVKNHSGVIGN 60

Query: 61 DLVTMDYTPARKNHPIHN 79
          DLVTMDYTPARKNHPIHN
Sbjct: 61 DLVTMDYTPARKNHPIHN 78

[Close]
BLAST of CsGy2G015220 vs. TrEMBL
Match: tr|A0A0A0LM46|A0A0A0LM46_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G297230 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.6e-30
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1  MVLKKTLAFSCNNLLQLLAFIFLXXXXXXXXGSSARSLVEGRSRNDDDPYVKNHSGVIGN 60
          MVLKKTLAFSCNNLLQLLAFIFLXXXXXXXXGSSARSLVEGRSRNDDDPYVKNHSGVIGN
Sbjct: 1  MVLKKTLAFSCNNLLQLLAFIFLXXXXXXXXGSSARSLVEGRSRNDDDPYVKNHSGVIGN 60

Query: 61 DLVTMDYTPARKNHPIHN 79
          DLVTMDYTPARKNHPIHN
Sbjct: 61 DLVTMDYTPARKNHPIHN 78

The following BLAST results are available for this feature:
BLAST of CsGy2G015220 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62099.13.9e-30100.00hypothetical protein Csa_2G297230 [Cucumis sativus][more]
BLAST of CsGy2G015220 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy2G015220 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy2G015220 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LM46|A0A0A0LM46_CUCSA2.6e-30100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G297230 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008083growth factor activity
Vocabulary: INTERPRO
TermDefinition
IPR039337RGF9
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0008083 growth factor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy2G015220.1CsGy2G015220.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33743:SF3ROOT MERISTEM GROWTH FACTOR 9coord: 10..78
IPR039337Root meristem growth factor 9PANTHERPTHR33743FAMILY NOT NAMEDcoord: 10..78

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy2G015220Cla007762Watermelon (97103) v1cgybwmB134
CsGy2G015220Csa2G297230Cucumber (Chinese Long) v2cgybcuB056
CsGy2G015220CSPI02G15220Wild cucumber (PI 183967)cgybcpiB056
CsGy2G015220MELO3C034637.2Melon (DHL92) v3.6.1cgybmedB079
CsGy2G015220CsaV3_2G017770Cucumber (Chinese Long) v3cgybcucB064
CsGy2G015220Cla97C02G027310Watermelon (97103) v2cgybwmbB115
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy2G015220Wax gourdcgybwgoB169
CsGy2G015220Wax gourdcgybwgoB184
CsGy2G015220Cucumber (Gy14) v2cgybcgybB066
CsGy2G015220Cucurbita maxima (Rimu)cgybcmaB219
CsGy2G015220Cucurbita maxima (Rimu)cgybcmaB232
CsGy2G015220Cucurbita maxima (Rimu)cgybcmaB238
CsGy2G015220Cucurbita moschata (Rifu)cgybcmoB210
CsGy2G015220Cucurbita moschata (Rifu)cgybcmoB224
CsGy2G015220Cucurbita pepo (Zucchini)cgybcpeB156
CsGy2G015220Cucurbita pepo (Zucchini)cgybcpeB194
CsGy2G015220Cucurbita pepo (Zucchini)cgybcpeB243
CsGy2G015220Cucumber (Chinese Long) v2cgybcuB084
CsGy2G015220Bottle gourd (USVL1VR-Ls)cgyblsiB086
CsGy2G015220Bottle gourd (USVL1VR-Ls)cgyblsiB096
CsGy2G015220Melon (DHL92) v3.5.1cgybmeB085
CsGy2G015220Watermelon (Charleston Gray)cgybwcgB113
CsGy2G015220Watermelon (Charleston Gray)cgybwcgB121
CsGy2G015220Watermelon (97103) v1cgybwmB127
CsGy2G015220Wild cucumber (PI 183967)cgybcpiB084
CsGy2G015220Silver-seed gourdcarcgybB0466
CsGy2G015220Silver-seed gourdcarcgybB1040
CsGy2G015220Cucumber (Chinese Long) v3cgybcucB089
CsGy2G015220Watermelon (97103) v2cgybwmbB094