Cla97C02G027310 (gene) Watermelon (97103) v2

Overview
NameCla97C02G027310
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionRoot meristem growth factor 9-like protein
LocationCla97Chr02 : 1026975 .. 1027321 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCTTAAGAAGGCATCAGCAGTTTCATGCAATAACATCCTTCAGCTATTGGCCTTCATCTTTCTGTTTTTTCTCCTCATCACAACCACAGGTAACTTTTAAGCTTTTGAAATCAAATTATTTATTTTGTTTATTATTATTTATTATTTGGAGAAATAATTGAGTATTAACTTCTTGTTATTGCATGTTGTTAATTAGGTTCTTCGGCGAGAAAGAGTTTGGTAGAAGGGAGGAGCCGAAATGAGGACGATCCATACGCCAAAAACCATGGCGGAGTGCTTGGAAACGACTTGGTGACGATGGATTATACTCCGGCGAGGAAGAACCATCCGATCCATAACTAA

mRNA sequence

ATGGTTCTTAAGAAGGCATCAGCAGTTTCATGCAATAACATCCTTCAGCTATTGGCCTTCATCTTTCTGTTTTTTCTCCTCATCACAACCACAGGTTCTTCGGCGAGAAAGAGTTTGGTAGAAGGGAGGAGCCGAAATGAGGACGATCCATACGCCAAAAACCATGGCGGAGTGCTTGGAAACGACTTGGTGACGATGGATTATACTCCGGCGAGGAAGAACCATCCGATCCATAACTAA

Coding sequence (CDS)

ATGGTTCTTAAGAAGGCATCAGCAGTTTCATGCAATAACATCCTTCAGCTATTGGCCTTCATCTTTCTGTTTTTTCTCCTCATCACAACCACAGGTTCTTCGGCGAGAAAGAGTTTGGTAGAAGGGAGGAGCCGAAATGAGGACGATCCATACGCCAAAAACCATGGCGGAGTGCTTGGAAACGACTTGGTGACGATGGATTATACTCCGGCGAGGAAGAACCATCCGATCCATAACTAA

Protein sequence

MVLKKASAVSCNNILQLLAFIFLFFLLITTTGSSARKSLVEGRSRNEDDPYAKNHGGVLGNDLVTMDYTPARKNHPIHN
Homology
[Close]
BLAST of Cla97C02G027310 vs. NCBI nr
Match: KGN62099.1 (hypothetical protein Csa_2G297230 [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 1.2e-23
Identity = 68/79 (86.08%), Postives = 71/79 (89.87%), Query Frame = 0 

Query: 1  MVLKKASAVSCNNILQLLAFIFLXXXXXXXXXXSARKSLVEGRSRNEDDPYAKNHGGVLG 60
          MVLKK  A SCNN+LQLLAFIFLXXXXXXXX  SAR SLVEGRSRN+DDPY KNH GV+G
Sbjct: 1  MVLKKTLAFSCNNLLQLLAFIFLXXXXXXXXGSSAR-SLVEGRSRNDDDPYVKNHSGVIG 60

Query: 61 NDLVTMDYTPARKNHPIHN 80
          NDLVTMDYTPARKNHPIHN
Sbjct: 61 NDLVTMDYTPARKNHPIHN 78

[Close]
BLAST of Cla97C02G027310 vs. TrEMBL
Match: tr|A0A0A0LM46|A0A0A0LM46_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G297230 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 8.1e-24
Identity = 68/79 (86.08%), Postives = 71/79 (89.87%), Query Frame = 0 

Query: 1  MVLKKASAVSCNNILQLLAFIFLXXXXXXXXXXSARKSLVEGRSRNEDDPYAKNHGGVLG 60
          MVLKK  A SCNN+LQLLAFIFLXXXXXXXX  SAR SLVEGRSRN+DDPY KNH GV+G
Sbjct: 1  MVLKKTLAFSCNNLLQLLAFIFLXXXXXXXXGSSAR-SLVEGRSRNDDDPYVKNHSGVIG 60

Query: 61 NDLVTMDYTPARKNHPIHN 80
          NDLVTMDYTPARKNHPIHN
Sbjct: 61 NDLVTMDYTPARKNHPIHN 78

The following BLAST results are available for this feature:
BLAST of Cla97C02G027310 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62099.11.2e-2386.08hypothetical protein Csa_2G297230 [Cucumis sativus][more]
BLAST of Cla97C02G027310 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LM46|A0A0A0LM46_CUCSA8.1e-2486.08Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G297230 PE=4 SV=1[more]
BLAST of Cla97C02G027310 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C02G027310 vs. TAIR10
Match NameE-valueIdentityDescription
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008083growth factor activity
Vocabulary: INTERPRO
TermDefinition
IPR039337RGF9
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008283 cell proliferation
biological_process GO:0040007 growth
biological_process GO:0007165 signal transduction
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0008083 growth factor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C02G027310.1Cla97C02G027310.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..63
NoneNo IPR availablePANTHERPTHR33743:SF3ROOT MERISTEM GROWTH FACTOR 9coord: 9..79
IPR039337Root meristem growth factor 9PANTHERPTHR33743FAMILY NOT NAMEDcoord: 9..79

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C02G027310Cla007762Watermelon (97103) v1wmwmbB324
Cla97C02G027310Csa2G297230Cucumber (Chinese Long) v2cuwmbB120
Cla97C02G027310CSPI02G15220Wild cucumber (PI 183967)cpiwmbB122
Cla97C02G027310CsGy2G015220Cucumber (Gy14) v2cgybwmbB115
Cla97C02G027310MELO3C034637.2Melon (DHL92) v3.6.1medwmbB089
Cla97C02G027310CsaV3_2G017770Cucumber (Chinese Long) v3cucwmbB124
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C02G027310Watermelon (97103) v2wmbwmbB008
Cla97C02G027310Silver-seed gourdcarwmbB0481
Cla97C02G027310Silver-seed gourdcarwmbB1115
Cla97C02G027310Cucumber (Gy14) v1cgywmbB129
Cla97C02G027310Cucumber (Gy14) v2cgybwmbB416
Cla97C02G027310Cucumber (Gy14) v1cgywmbB442
Cla97C02G027310Cucurbita maxima (Rimu)cmawmbB569
Cla97C02G027310Cucurbita maxima (Rimu)cmawmbB620
Cla97C02G027310Cucurbita maxima (Rimu)cmawmbB678
Cla97C02G027310Cucurbita moschata (Rifu)cmowmbB546
Cla97C02G027310Cucurbita moschata (Rifu)cmowmbB595
Cla97C02G027310Cucurbita moschata (Rifu)cmowmbB653
Cla97C02G027310Wild cucumber (PI 183967)cpiwmbB462
Cla97C02G027310Cucumber (Chinese Long) v3cucwmbB454
Cla97C02G027310Cucumber (Chinese Long) v2cuwmbB437
Cla97C02G027310Bottle gourd (USVL1VR-Ls)lsiwmbB053
Cla97C02G027310Bottle gourd (USVL1VR-Ls)lsiwmbB126
Cla97C02G027310Melon (DHL92) v3.5.1mewmbB096
Cla97C02G027310Watermelon (Charleston Gray)wcgwmbB100
Cla97C02G027310Watermelon (Charleston Gray)wcgwmbB138
Cla97C02G027310Watermelon (97103) v1wmwmbB259
Cla97C02G027310Wax gourdwgowmbB416
Cla97C02G027310Wax gourdwgowmbB375