CsGy2G009750 (gene) Cucumber (Gy14) v2

Overview
NameCsGy2G009750
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionergosterol biosynthetic protein 28
LocationChr2 : 9275081 .. 9276085 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATACACTTTGCAGTCTCTATGCATTCAACCATGAGAATAAGCCCATTTATTTGACGACATTTTTGTCATTCATCTATGCTTTAGGGCATTTCTTAACTGAATACTTGATATATCATACCATGTCCCATTGCAAATATGATGAGTGACGACTGTTGGCATCTTTGCAGGTATGATTGCTGGAATTAAGTCCATCCCTATCCTGTATTAAAATTTATTTGGACTTTTACATCTTTTTCTCTATGGTCTTTTCTCCTTTGTTATTTTTAAATCTTGAACTAAAAGAATTTCTTTTTACAAGAATTTATCTGGTTGATCCTATATACTACTATCATTATTAGATGATTAATTAGTTTACATCCATCTACTATCTCATGACACGATAATTTTAATTAGTTTGACATCTCAGTCAATAGGACAGTGATTTTATTCCCATTCGCAGTATTGTGTCTATTCTAAAACTGATTTTGCTACTCAATAGAAGGAATAATGCTTGTTGTTTTGCCTTTTGTTTTAGACATCAAACATAAAGATCACTTGTTCATGTTGAACTTTCTGTTAACAGGCACATCAATATAATATGGATGCTTCTCTAGTGGAATTCACACTAAAGAGTTCACCCTAAAGATTCTTAATATGCTCAAATTTAATATGCGAACTTATTTTCTTCGATCCAGGGCACTGAATATACAAAGAACATTAGATTAGCTTGAAACACTCTCAATATCACTGTCTACCCAATATGATTTAACCTGCTTTTGTTAGTTCGGTATAATGCCATGTTGATGATGACACTCTTCTAGCTTGTACTAAAAATGGAACTAATAATAATATCATAAGAAACAGGAGCATGTTTTTTTGCCGGGGAAACCACCAGATTGGCAAAATTTTGTAATTGGGATCATAACTTTGTTACTTACCAATTCAACCATTACTTTTATAGAGGAGAACAATGGTGGAAATGTTGCAGCCTCTCTCATGGCTCATCTTGCTCCCAAAGCTAA

mRNA sequence

ATGGATACACTTTGCAGTCTCTATGCATTCAACCATGAGAATAAGCCCATTTATTTGACGACATTTTTGTCATTCATCTATGCTTTAGGGCATTTCTTAACTGAATACTTGATATATCATACCATGTCCCATTGCAAATATGATGAAGGAGAACAATGGTGGAAATGTTGCAGCCTCTCTCATGGCTCATCTTGCTCCCAAAGCTAA

Coding sequence (CDS)

ATGGATACACTTTGCAGTCTCTATGCATTCAACCATGAGAATAAGCCCATTTATTTGACGACATTTTTGTCATTCATCTATGCTTTAGGGCATTTCTTAACTGAATACTTGATATATCATACCATGTCCCATTGCAAATATGATGAAGGAGAACAATGGTGGAAATGTTGCAGCCTCTCTCATGGCTCATCTTGCTCCCAAAGCTAA

Protein sequence

MDTLCSLYAFNHENKPIYLTTFLSFIYALGHFLTEYLIYHTMSHCKYDEGEQWWKCCSLSHGSSCSQS
Homology
[Close]
BLAST of CsGy2G009750 vs. NCBI nr
Match: XP_004136234.1 (PREDICTED: ergosterol biosynthetic protein 28 [Cucumis sativus] >KGN60304.1 hypothetical protein Csa_3G894520 [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 6.0e-11
Identity = 37/41 (90.24%), Postives = 37/41 (90.24%), Query Frame = 0 

Query: 3  TLCSLYAFNHENKPIYLTTFLSFIYALGHFLTEYLIYHTMS 44
          TLC L AFN ENKPIYL TFLSFIYALGHFLTEYLIYHTMS
Sbjct: 56 TLCILCAFNLENKPIYLATFLSFIYALGHFLTEYLIYHTMS 96

[Close]
BLAST of CsGy2G009750 vs. NCBI nr
Match: XP_008466094.1 (PREDICTED: ergosterol biosynthetic protein 28 [Cucumis melo])

HSP 1 Score: 75.9 bits (185), Expect = 6.0e-11
Identity = 37/41 (90.24%), Postives = 37/41 (90.24%), Query Frame = 0 

Query: 3  TLCSLYAFNHENKPIYLTTFLSFIYALGHFLTEYLIYHTMS 44
          TLC L AFN ENKPIYL TFLSFIYALGHFLTEYLIYHTMS
Sbjct: 56 TLCILCAFNLENKPIYLATFLSFIYALGHFLTEYLIYHTMS 96

[Close]
BLAST of CsGy2G009750 vs. NCBI nr
Match: XP_022981077.1 (ergosterol biosynthetic protein 28 [Cucurbita maxima] >XP_022981078.1 ergosterol biosynthetic protein 28 [Cucurbita maxima] >XP_023525018.1 ergosterol biosynthetic protein 28 [Cucurbita pepo subsp. pepo] >XP_023525019.1 ergosterol biosynthetic protein 28 [Cucurbita pepo subsp. pepo] >XP_023525020.1 ergosterol biosynthetic protein 28 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 73.9 bits (180), Expect = 2.3e-10
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 0 

Query: 3  TLCSLYAFNHENKPIYLTTFLSFIYALGHFLTEYLIYHTMS 44
          TLC L AFN ENKPIYL TFLSFIYALGHFLTE+LIYHTMS
Sbjct: 56 TLCILCAFNLENKPIYLATFLSFIYALGHFLTEHLIYHTMS 96

[Close]
BLAST of CsGy2G009750 vs. NCBI nr
Match: XP_007201912.1 (ergosterol biosynthetic protein 28 [Prunus persica] >ONH92068.1 hypothetical protein PRUPE_8G152200 [Prunus persica] >PQM33144.1 ergosterol biosynthetic protein 28 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 73.6 bits (179), Expect = 3.0e-10
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 0 

Query: 3  TLCSLYAFNHENKPIYLTTFLSFIYALGHFLTEYLIYHTMS 44
          TLC L AFN ENKP+YL TFLSF+YALGHFLTEYLIYHTM+
Sbjct: 56 TLCYLCAFNLENKPLYLATFLSFVYALGHFLTEYLIYHTMA 96

[Close]
BLAST of CsGy2G009750 vs. NCBI nr
Match: PON55159.1 (Erg [Parasponia andersonii])

HSP 1 Score: 73.6 bits (179), Expect = 3.0e-10
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 0 

Query: 3  TLCSLYAFNHENKPIYLTTFLSFIYALGHFLTEYLIYHTMS 44
          TLC L AFN ENKP+YL TFLSFIYALGHFLTEYL+YHTM+
Sbjct: 56 TLCFLCAFNLENKPLYLATFLSFIYALGHFLTEYLVYHTMA 96

[Close]
BLAST of CsGy2G009750 vs. TAIR10
Match: AT1G10030.1 (homolog of yeast ergosterol28)

HSP 1 Score: 69.3 bits (168), Expect = 1.0e-12
Identity = 33/41 (80.49%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 3  TLCSLYAFNHENKPIYLTTFLSFIYALGHFLTEYLIYHTMS 44
          TLC L AFN ENKP+YL TFLSFIYALGHFLTEYL Y TM+
Sbjct: 56 TLCFLCAFNLENKPLYLATFLSFIYALGHFLTEYLFYQTMT 96

[Close]
BLAST of CsGy2G009750 vs. Swiss-Prot
Match: sp|O80594|ERG28_ARATH (Ergosterol biosynthetic protein 28 OS=Arabidopsis thaliana OX=3702 GN=At1g10030 PE=2 SV=2)

HSP 1 Score: 69.3 bits (168), Expect = 1.8e-11
Identity = 33/41 (80.49%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 3  TLCSLYAFNHENKPIYLTTFLSFIYALGHFLTEYLIYHTMS 44
          TLC L AFN ENKP+YL TFLSFIYALGHFLTEYL Y TM+
Sbjct: 56 TLCFLCAFNLENKPLYLATFLSFIYALGHFLTEYLFYQTMT 96

[Close]
BLAST of CsGy2G009750 vs. TrEMBL
Match: tr|A0A1S3CQG2|A0A1S3CQG2_CUCME (ergosterol biosynthetic protein 28 OS=Cucumis melo OX=3656 GN=LOC103503620 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.0e-11
Identity = 37/41 (90.24%), Postives = 37/41 (90.24%), Query Frame = 0 

Query: 3  TLCSLYAFNHENKPIYLTTFLSFIYALGHFLTEYLIYHTMS 44
          TLC L AFN ENKPIYL TFLSFIYALGHFLTEYLIYHTMS
Sbjct: 56 TLCILCAFNLENKPIYLATFLSFIYALGHFLTEYLIYHTMS 96

[Close]
BLAST of CsGy2G009750 vs. TrEMBL
Match: tr|A0A0A0LGZ9|A0A0A0LGZ9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G894520 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.0e-11
Identity = 37/41 (90.24%), Postives = 37/41 (90.24%), Query Frame = 0 

Query: 3  TLCSLYAFNHENKPIYLTTFLSFIYALGHFLTEYLIYHTMS 44
          TLC L AFN ENKPIYL TFLSFIYALGHFLTEYLIYHTMS
Sbjct: 56 TLCILCAFNLENKPIYLATFLSFIYALGHFLTEYLIYHTMS 96

[Close]
BLAST of CsGy2G009750 vs. TrEMBL
Match: tr|A0A0D3HX27|A0A0D3HX27_9ORYZ (Uncharacterized protein OS=Oryza barthii OX=65489 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.5e-10
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 0 

Query: 3   TLCSLYAFNHENKPIYLTTFLSFIYALGHFLTEYLIYHTMS 44
           TLC L AFN ENKP+YL TFLSFIYALGHFLTEYLIYHTM+
Sbjct: 62  TLCFLCAFNLENKPLYLATFLSFIYALGHFLTEYLIYHTMA 102

[Close]
BLAST of CsGy2G009750 vs. TrEMBL
Match: tr|M5VQ76|M5VQ76_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G152200 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.0e-10
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 0 

Query: 3  TLCSLYAFNHENKPIYLTTFLSFIYALGHFLTEYLIYHTMS 44
          TLC L AFN ENKP+YL TFLSF+YALGHFLTEYLIYHTM+
Sbjct: 56 TLCYLCAFNLENKPLYLATFLSFVYALGHFLTEYLIYHTMA 96

[Close]
BLAST of CsGy2G009750 vs. TrEMBL
Match: tr|A0A2P5EML9|A0A2P5EML9_9ROSA (Erg OS=Trema orientalis OX=63057 GN=TorRG33x02_173430 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.0e-10
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 0 

Query: 3  TLCSLYAFNHENKPIYLTTFLSFIYALGHFLTEYLIYHTMS 44
          TLC L AFN ENKP+YL TFLSFIYALGHFLTEYL+YHTM+
Sbjct: 56 TLCFLCAFNLENKPLYLATFLSFIYALGHFLTEYLVYHTMA 96

The following BLAST results are available for this feature:
BLAST of CsGy2G009750 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004136234.16.0e-1190.24PREDICTED: ergosterol biosynthetic protein 28 [Cucumis sativus] >KGN60304.1 hypo... [more]
XP_008466094.16.0e-1190.24PREDICTED: ergosterol biosynthetic protein 28 [Cucumis melo][more]
XP_022981077.12.3e-1087.80ergosterol biosynthetic protein 28 [Cucurbita maxima] >XP_022981078.1 ergosterol... [more]
XP_007201912.13.0e-1082.93ergosterol biosynthetic protein 28 [Prunus persica] >ONH92068.1 hypothetical pro... [more]
PON55159.13.0e-1082.93Erg [Parasponia andersonii][more]
BLAST of CsGy2G009750 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G10030.11.0e-1280.49homolog of yeast ergosterol28[more]
BLAST of CsGy2G009750 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O80594|ERG28_ARATH1.8e-1180.49Ergosterol biosynthetic protein 28 OS=Arabidopsis thaliana OX=3702 GN=At1g10030 ... [more]
BLAST of CsGy2G009750 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CQG2|A0A1S3CQG2_CUCME4.0e-1190.24ergosterol biosynthetic protein 28 OS=Cucumis melo OX=3656 GN=LOC103503620 PE=4 ... [more]
tr|A0A0A0LGZ9|A0A0A0LGZ9_CUCSA4.0e-1190.24Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G894520 PE=4 SV=1[more]
tr|A0A0D3HX27|A0A0D3HX27_9ORYZ1.5e-1085.37Uncharacterized protein OS=Oryza barthii OX=65489 PE=4 SV=1[more]
tr|M5VQ76|M5VQ76_PRUPE2.0e-1082.93Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G152200 PE=4 SV=1[more]
tr|A0A2P5EML9|A0A2P5EML9_9ROSA2.0e-1082.93Erg OS=Trema orientalis OX=63057 GN=TorRG33x02_173430 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR005352Erg28
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006696 ergosterol biosynthetic process
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0030674 protein binding, bridging
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy2G009750.1CsGy2G009750.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005352Erg28PFAMPF03694Erg28coord: 5..44
e-value: 1.5E-9
score: 38.1

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy2G009750Cucumber (Chinese Long) v3cgybcucB064
CsGy2G009750Wax gourdcgybwgoB117
CsGy2G009750Wax gourdcgybwgoB123
CsGy2G009750Cucurbita moschata (Rifu)cgybcmoB186
CsGy2G009750Cucurbita pepo (Zucchini)cgybcpeB175
CsGy2G009750Cucumber (Chinese Long) v2cgybcuB056
CsGy2G009750Cucumber (Chinese Long) v2cgybcuB065
CsGy2G009750Melon (DHL92) v3.5.1cgybmeB122
CsGy2G009750Melon (DHL92) v3.6.1cgybmedB120
CsGy2G009750Wild cucumber (PI 183967)cgybcpiB056