CsGy2G001360 (gene) Cucumber (Gy14) v2

NameCsGy2G001360
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionROTUNDIFOLIA like 7
LocationChr2 : 906213 .. 906398 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCCTCGCATACGCCGTCGCTCACTCTTCTCAGTCAACGCAACTCCGCATCAGAAACCGCCGGAAAACCAGTTTTCGAAAGCGATGCTTCCGGATGATCAAGCAACAGAAAACCAGATTTTATATCCTCGGCCGTTGCATCTCCATGCTTCTTTGTTGGCACGATCATGATATTACTGATTAA

mRNA sequence

ATGTCCCTCGCATACGCCGTCGCTCACTCTTCTCAGTCAACGCAACTCCGCATCAGAAACCGCCGGAAAACCAGTTTTCGAAAGCGATGCTTCCGGATGATCAAGCAACAGAAAACCAGATTTTATATCCTCGGCCGTTGCATCTCCATGCTTCTTTGTTGGCACGATCATGATATTACTGATTAA

Coding sequence (CDS)

ATGTCCCTCGCATACGCCGTCGCTCACTCTTCTCAGTCAACGCAACTCCGCATCAGAAACCGCCGGAAAACCAGTTTTCGAAAGCGATGCTTCCGGATGATCAAGCAACAGAAAACCAGATTTTATATCCTCGGCCGTTGCATCTCCATGCTTCTTTGTTGGCACGATCATGATATTACTGATTAA

Protein sequence

MSLAYAVAHSSQSTQLRIRNRRKTSFRKRCFRMIKQQKTRFYILGRCISMLLCWHDHDITD
BLAST of CsGy2G001360 vs. NCBI nr
Match: KGN60637.1 (hypothetical protein Csa_2G005340 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 4.6e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0

Query: 1  MSLAYAVAHSSQSTQLRIRNRRKTSFRKRCFRMIKQQKTRFYILGRCISMLLCWHDHDIT 60
          MSLAYAVAHSSQSTQLRIRNRRKTSFRKRCFRMIKQQKTRFYILGRCISMLLCWHDHDIT
Sbjct: 1  MSLAYAVAHSSQSTQLRIRNRRKTSFRKRCFRMIKQQKTRFYILGRCISMLLCWHDHDIT 60

Query: 61 D 62
          D
Sbjct: 61 D 61

BLAST of CsGy2G001360 vs. NCBI nr
Match: XP_024029977.1 (uncharacterized protein LOC112094100 [Morus notabilis])

HSP 1 Score: 79.7 bits (195), Expect = 3.7e-12
Identity = 39/60 (65.00%), Postives = 44/60 (73.33%), Query Frame = 0

Query: 2  SLAYAVAHSSQSTQLRIRNRRKTSFRKRCFRMIKQQKTRFYILGRCISMLLCWHDHDITD 61
          S +Y +  SS       R RRKTS RKRC  M+KQQKTRFYILGRC+SMLLCWHDH I+D
Sbjct: 7  SYSYYITESS-------RPRRKTSLRKRCLLMVKQQKTRFYILGRCVSMLLCWHDHSISD 59

BLAST of CsGy2G001360 vs. NCBI nr
Match: PKU67116.1 (hypothetical protein MA16_Dca012977 [Dendrobium catenatum])

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-11
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 0

Query: 1  MSLAYAVAHSSQSTQLRIRNRRKTSFRKRCFRMIKQQKTRFYILGRCISMLLCWHDHDIT 60
          M++A+ V+ SS S   R    RKT  R+RC  M+KQQKTRFYILGRC+SMLLCWH H+I+
Sbjct: 1  MAIAFDVSVSSNSRSRRPETGRKTGLRRRCATMMKQQKTRFYILGRCVSMLLCWHAHNIS 60

Query: 61 D 62
          D
Sbjct: 61 D 61

BLAST of CsGy2G001360 vs. NCBI nr
Match: XP_021903113.1 (uncharacterized protein LOC110818516 [Carica papaya])

HSP 1 Score: 77.4 bits (189), Expect = 1.9e-11
Identity = 34/40 (85.00%), Postives = 35/40 (87.50%), Query Frame = 0

Query: 22 RKTSFRKRCFRMIKQQKTRFYILGRCISMLLCWHDHDITD 62
          RKT FRKRC  M+KQQKTRFYILGRCISMLLCWHDH I D
Sbjct: 19 RKTGFRKRCLLMVKQQKTRFYILGRCISMLLCWHDHSIPD 58

BLAST of CsGy2G001360 vs. NCBI nr
Match: PSS20885.1 (Lipoyl synthase [Actinidia chinensis var. chinensis])

HSP 1 Score: 77.0 bits (188), Expect = 2.4e-11
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 0

Query: 8  AHSSQSTQLRIRNRRKTSFRKRCFRMIKQQKTRFYILGRCISMLLCWHDHDITD 62
          +H  Q T  R ++RR+T FR+RC  + KQQ+ RFYI+GRC+SMLLCWHDHD++D
Sbjct: 5  SHFLQFTASRRKSRRRTGFRRRCLAVYKQQRARFYIIGRCVSMLLCWHDHDVSD 58

BLAST of CsGy2G001360 vs. TAIR10
Match: AT4G13395.1 (ROTUNDIFOLIA like 12)

HSP 1 Score: 64.3 bits (155), Expect = 3.0e-11
Identity = 29/49 (59.18%), Postives = 35/49 (71.43%), Query Frame = 0

Query: 13 STQLRIRNRRKTSFRKRCFRMIKQQKTRFYILGRCISMLLCWHDHDITD 62
          ++ L  +  RKT F  RC  M KQQ+TR YIL RC+SMLLCWHDH I+D
Sbjct: 7  NSSLPTKPNRKTRFGDRCLLMAKQQRTRLYILRRCVSMLLCWHDHSISD 55

BLAST of CsGy2G001360 vs. TAIR10
Match: AT2G36985.1 (DVL family protein)

HSP 1 Score: 49.3 bits (116), Expect = 9.8e-07
Identity = 20/39 (51.28%), Postives = 30/39 (76.92%), Query Frame = 0

Query: 25 SFRKRCFRMIKQQKTRFYILGRCISMLLCWHD--HDITD 62
          +F ++C  ++K+Q+ +FYIL RCI+ML+CWHD  HD  D
Sbjct: 14 TFGQKCSHVVKKQRAKFYILRRCIAMLVCWHDQNHDRKD 52

BLAST of CsGy2G001360 vs. TAIR10
Match: AT3G55515.1 (ROTUNDIFOLIA like 7)

HSP 1 Score: 48.9 bits (115), Expect = 1.3e-06
Identity = 19/46 (41.30%), Postives = 33/46 (71.74%), Query Frame = 0

Query: 13 STQLRIRNRRKTSFRKRCFRMIKQQKTRFYILGRCISMLLCWHDHD 59
          +T+   + + K  F ++C R++K+Q+ RFYI+ RC+ ML+CW DH+
Sbjct: 27 TTRSSRQKQGKYGFTRKCGRLVKEQRARFYIMRRCVVMLICWTDHN 72

BLAST of CsGy2G001360 vs. TAIR10
Match: AT2G39705.1 (ROTUNDIFOLIA like 8)

HSP 1 Score: 48.5 bits (114), Expect = 1.7e-06
Identity = 18/48 (37.50%), Postives = 34/48 (70.83%), Query Frame = 0

Query: 10 SSQSTQLRIRNRRKTSFRKRCFRMIKQQKTRFYILGRCISMLLCWHDH 58
          S+ S+    + + + +F ++C R++K+Q+ RFYI+ RC+ ML+CW D+
Sbjct: 36 STSSSSFNGKKQGRCAFTRKCARLVKEQRARFYIMRRCVIMLICWRDN 83

BLAST of CsGy2G001360 vs. TAIR10
Match: AT3G46613.1 (ROTUNDIFOLIA like 4)

HSP 1 Score: 47.4 bits (111), Expect = 3.7e-06
Identity = 16/29 (55.17%), Postives = 24/29 (82.76%), Query Frame = 0

Query: 29  RCFRMIKQQKTRFYILGRCISMLLCWHDH 58
           +CF++ K+ K+RFYI+ RC+ ML+CWH H
Sbjct: 115 KCFKVAKEHKSRFYIIKRCVLMLVCWHKH 143

BLAST of CsGy2G001360 vs. TrEMBL
Match: tr|A0A0A0LIV1|A0A0A0LIV1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G005340 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.0e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0

Query: 1  MSLAYAVAHSSQSTQLRIRNRRKTSFRKRCFRMIKQQKTRFYILGRCISMLLCWHDHDIT 60
          MSLAYAVAHSSQSTQLRIRNRRKTSFRKRCFRMIKQQKTRFYILGRCISMLLCWHDHDIT
Sbjct: 1  MSLAYAVAHSSQSTQLRIRNRRKTSFRKRCFRMIKQQKTRFYILGRCISMLLCWHDHDIT 60

Query: 61 D 62
          D
Sbjct: 61 D 61

BLAST of CsGy2G001360 vs. TrEMBL
Match: tr|A0A2I0VUM3|A0A2I0VUM3_9ASPA (Uncharacterized protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca012977 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 7.2e-12
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 0

Query: 1  MSLAYAVAHSSQSTQLRIRNRRKTSFRKRCFRMIKQQKTRFYILGRCISMLLCWHDHDIT 60
          M++A+ V+ SS S   R    RKT  R+RC  M+KQQKTRFYILGRC+SMLLCWH H+I+
Sbjct: 1  MAIAFDVSVSSNSRSRRPETGRKTGLRRRCATMMKQQKTRFYILGRCVSMLLCWHAHNIS 60

Query: 61 D 62
          D
Sbjct: 61 D 61

BLAST of CsGy2G001360 vs. TrEMBL
Match: tr|A0A2R6R4H0|A0A2R6R4H0_ACTCH (Lipoyl synthase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc09924 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-11
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 0

Query: 8  AHSSQSTQLRIRNRRKTSFRKRCFRMIKQQKTRFYILGRCISMLLCWHDHDITD 62
          +H  Q T  R ++RR+T FR+RC  + KQQ+ RFYI+GRC+SMLLCWHDHD++D
Sbjct: 5  SHFLQFTASRRKSRRRTGFRRRCLAVYKQQRARFYIIGRCVSMLLCWHDHDVSD 58

BLAST of CsGy2G001360 vs. TrEMBL
Match: tr|A0A2P6RJL2|A0A2P6RJL2_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0091061 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 6.1e-11
Identity = 37/58 (63.79%), Postives = 44/58 (75.86%), Query Frame = 0

Query: 6  AVAHSSQ--STQLRIRNRRKTSFRKRCFRMIKQQKTRFYILGRCISMLLCWHDHDITD 62
          +V++ SQ  S Q R ++ RK  FRKRC  M K QKTRFYILGRC+SMLLCWHDH I+D
Sbjct: 3  SVSYLSQVRSHQSRPKSHRKIGFRKRCVMMAKHQKTRFYILGRCVSMLLCWHDHSISD 60

BLAST of CsGy2G001360 vs. TrEMBL
Match: tr|A0A251NFG1|A0A251NFG1_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G227100 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 8.0e-11
Identity = 33/47 (70.21%), Postives = 38/47 (80.85%), Query Frame = 0

Query: 15 QLRIRNRRKTSFRKRCFRMIKQQKTRFYILGRCISMLLCWHDHDITD 62
          ++R +  RK  FRKRCF M K QKTRFYILGRC+SMLLCWHDH I+D
Sbjct: 14 RVRRKIHRKMGFRKRCFMMAKHQKTRFYILGRCVSMLLCWHDHSISD 60

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN60637.14.6e-26100.00hypothetical protein Csa_2G005340 [Cucumis sativus][more]
XP_024029977.13.7e-1265.00uncharacterized protein LOC112094100 [Morus notabilis][more]
PKU67116.11.1e-1160.66hypothetical protein MA16_Dca012977 [Dendrobium catenatum][more]
XP_021903113.11.9e-1185.00uncharacterized protein LOC110818516 [Carica papaya][more]
PSS20885.12.4e-1159.26Lipoyl synthase [Actinidia chinensis var. chinensis][more]
Match NameE-valueIdentityDescription
AT4G13395.13.0e-1159.18ROTUNDIFOLIA like 12[more]
AT2G36985.19.8e-0751.28DVL family protein[more]
AT3G55515.11.3e-0641.30ROTUNDIFOLIA like 7[more]
AT2G39705.11.7e-0637.50ROTUNDIFOLIA like 8[more]
AT3G46613.13.7e-0655.17ROTUNDIFOLIA like 4[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LIV1|A0A0A0LIV1_CUCSA3.0e-26100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G005340 PE=4 SV=1[more]
tr|A0A2I0VUM3|A0A2I0VUM3_9ASPA7.2e-1260.66Uncharacterized protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca012977 PE=4... [more]
tr|A0A2R6R4H0|A0A2R6R4H0_ACTCH1.6e-1159.26Lipoyl synthase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc099... [more]
tr|A0A2P6RJL2|A0A2P6RJL2_ROSCH6.1e-1163.79Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0091061 PE=4... [more]
tr|A0A251NFG1|A0A251NFG1_PRUPE8.0e-1170.21Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G227100 PE=4 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012552DVL
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy2G001360.1CsGy2G001360.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012552DVLPFAMPF08137DVLcoord: 35..53
e-value: 9.6E-12
score: 44.4
NoneNo IPR availablePANTHERPTHR33102FAMILY NOT NAMEDcoord: 8..61
NoneNo IPR availablePANTHERPTHR33102:SF12DVL10coord: 8..61

The following gene(s) are paralogous to this gene:

None