Carg10875 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg10875
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	DEVIL-like protein
Location	Cucurbita_argyrosperma_scaffold_034 : 628276 .. 628545 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCCGAATTCCGTCCTTCTTCGCTAATCCTTTTTTGTCTCTCTCTTTTCTTGATTCCCTCCGCCCTCTGGTCTCCGCCCTAATGCCCTCTGCATACTCCGCAGCACATGCTTCACAGTCAACACAACTCTGCCTCGGAAACCGCCGGAGAACCAGTTTTCGAAAGCGGTGCTTGCTGATGATCAAGCAACAGAAAACCAGATTCTATATTCTCGCCCGTTGTATCTCCATGCTTATGTGTTGGAACGATCGCGATATTCCTGATTAA

mRNA sequence

ATGCCCCGAATTCCGTCCTTCTTCGCTAATCCTTTTTTGTCTCTCTCTTTTCTTGATTCCCTCCGCCCTCTGGTCTCCGCCCTAATGCCCTCTGCATACTCCGCAGCACATGCTTCACAGTCAACACAACTCTGCCTCGGAAACCGCCGGAGAACCAGTTTTCGAAAGCGGTGCTTGCTGATGATCAAGCAACAGAAAACCAGATTCTATATTCTCGCCCGTTGTATCTCCATGCTTATGTGTTGGAACGATCGCGATATTCCTGATTAA

Coding sequence (CDS)

ATGCCCCGAATTCCGTCCTTCTTCGCTAATCCTTTTTTGTCTCTCTCTTTTCTTGATTCCCTCCGCCCTCTGGTCTCCGCCCTAATGCCCTCTGCATACTCCGCAGCACATGCTTCACAGTCAACACAACTCTGCCTCGGAAACCGCCGGAGAACCAGTTTTCGAAAGCGGTGCTTGCTGATGATCAAGCAACAGAAAACCAGATTCTATATTCTCGCCCGTTGTATCTCCATGCTTATGTGTTGGAACGATCGCGATATTCCTGATTAA

Protein sequence

MPRIPSFFANPFLSLSFLDSLRPLVSALMPSAYSAAHASQSTQLCLGNRRRTSFRKRCLLMIKQQKTRFYILARCISMLMCWNDRDIPD

Homology

[Close]

BLAST of Carg10875 vs. NCBI nr
Match: KGN60637.1 (hypothetical protein Csa_2G005340 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 2.1e-16
Identity = 45/61 (73.77%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 29 MPSAYSAAHASQSTQLCLGNRRRTSFRKRCLLMIKQQKTRFYILARCISMLMCWNDRDIP 88
          M  AY+ AH+SQSTQL + NRR+TSFRKRC  MIKQQKTRFYIL RCISML+CW+D DI 
Sbjct: 1  MSLAYAVAHSSQSTQLRIRNRRKTSFRKRCFRMIKQQKTRFYILGRCISMLLCWHDHDIT 60

Query: 89 D 90
          D
Sbjct: 61 D 61

[Close]

BLAST of Carg10875 vs. NCBI nr
Match: XP_021903113.1 (uncharacterized protein LOC110818516 [Carica papaya])

HSP 1 Score: 74.3 bits (181), Expect = 2.3e-10
Identity = 32/40 (80.00%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 50 RRTSFRKRCLLMIKQQKTRFYILARCISMLMCWNDRDIPD 90
          R+T FRKRCLLM+KQQKTRFYIL RCISML+CW+D  IPD
Sbjct: 19 RKTGFRKRCLLMVKQQKTRFYILGRCISMLLCWHDHSIPD 58

[Close]

BLAST of Carg10875 vs. NCBI nr
Match: XP_024029977.1 (uncharacterized protein LOC112094100 [Morus notabilis])

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-09
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 0


Query: 49 RRRTSFRKRCLLMIKQQKTRFYILARCISMLMCWNDRDIPD 90
          RR+TS RKRCLLM+KQQKTRFYIL RC+SML+CW+D  I D
Sbjct: 19 RRKTSLRKRCLLMVKQQKTRFYILGRCVSMLLCWHDHSISD 59

[Close]

BLAST of Carg10875 vs. NCBI nr
Match: XP_015898373.1 (uncharacterized protein LOC107431866 [Ziziphus jujuba] >XP_015902478.1 uncharacterized protein LOC107435386 [Ziziphus jujuba])

HSP 1 Score: 70.9 bits (172), Expect = 2.5e-09
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 0


Query: 32 AYSAAHASQSTQLCLGNRRRTSFRKRCLLMIKQQKTRFYILARCISMLMCWNDRDIPD 90
          A S+ + + +++ C  N R+T  RKRC LM+KQQKTRFYIL RCISML+CW D  + D
Sbjct: 2  AVSSYYLTPTSRPCKINNRKTGLRKRCFLMVKQQKTRFYILGRCISMLLCWQDHAVSD 59

[Close]

BLAST of Carg10875 vs. NCBI nr
Match: XP_017982174.1 (PREDICTED: uncharacterized protein LOC18588644 [Theobroma cacao])

HSP 1 Score: 69.3 bits (168), Expect = 7.4e-09
Identity = 34/52 (65.38%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 39 SQSTQLCLGNR-RRTSFRKRCLLMIKQQKTRFYILARCISMLMCWNDRDIPD 90
          S S   C   + R+ SFRKRCLLM KQQKTRFYIL RCISML+CW+D  I D
Sbjct: 9  STSNPCCRSQKPRKPSFRKRCLLMAKQQKTRFYILGRCISMLLCWHDHSISD 60

[Close]

BLAST of Carg10875 vs. TAIR10
Match: AT4G13395.1 (ROTUNDIFOLIA like 12)

HSP 1 Score: 60.1 bits (144), Expect = 8.1e-10
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 50 RRTSFRKRCLLMIKQQKTRFYILARCISMLMCWNDRDIPD 90
          R+T F  RCLLM KQQ+TR YIL RC+SML+CW+D  I D
Sbjct: 16 RKTRFGDRCLLMAKQQRTRLYILRRCVSMLLCWHDHSISD 55

[Close]

BLAST of Carg10875 vs. TAIR10
Match: AT2G39705.1 (ROTUNDIFOLIA like 8)

HSP 1 Score: 45.8 bits (107), Expect = 1.6e-05
Identity = 16/34 (47.06%), Postives = 26/34 (76.47%), Query Frame = 0


Query: 51 RTSFRKRCLLMIKQQKTRFYILARCISMLMCWND 85
          R +F ++C  ++K+Q+ RFYI+ RC+ ML+CW D
Sbjct: 49 RCAFTRKCARLVKEQRARFYIMRRCVIMLICWRD 82

[Close]

BLAST of Carg10875 vs. TAIR10
Match: AT2G36985.1 (DVL family protein)

HSP 1 Score: 45.1 bits (105), Expect = 2.7e-05
Identity = 16/34 (47.06%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 53 SFRKRCLLMIKQQKTRFYILARCISMLMCWNDRD 87
          +F ++C  ++K+Q+ +FYIL RCI+ML+CW+D++
Sbjct: 14 TFGQKCSHVVKKQRAKFYILRRCIAMLVCWHDQN 47

[Close]

BLAST of Carg10875 vs. TAIR10
Match: AT3G55515.1 (ROTUNDIFOLIA like 7)

HSP 1 Score: 42.7 bits (99), Expect = 1.3e-04
Identity = 17/49 (34.69%), Postives = 31/49 (63.27%), Query Frame = 0


Query: 38 ASQSTQLCLGNRRRTSFRKRCLLMIKQQKTRFYILARCISMLMCWNDRD 87
          A  +T+     + +  F ++C  ++K+Q+ RFYI+ RC+ ML+CW D +
Sbjct: 24 ALNTTRSSRQKQGKYGFTRKCGRLVKEQRARFYIMRRCVVMLICWTDHN 72

[Close]

BLAST of Carg10875 vs. TAIR10
Match: AT4G35783.1 (ROTUNDIFOLIA like 6)

HSP 1 Score: 42.0 bits (97), Expect = 2.3e-04
Identity = 16/28 (57.14%), Postives = 23/28 (82.14%), Query Frame = 0


Query: 56 KRCLLMIKQQKTRFYILARCISMLMCWN 84
          K CL M+K++++RFYI  RCI ML+CW+
Sbjct: 30 KGCLAMVKERRSRFYIARRCILMLLCWH 57

[Close]

BLAST of Carg10875 vs. TrEMBL
Match: tr|A0A0A0LIV1|A0A0A0LIV1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G005340 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.4e-16
Identity = 45/61 (73.77%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 29 MPSAYSAAHASQSTQLCLGNRRRTSFRKRCLLMIKQQKTRFYILARCISMLMCWNDRDIP 88
          M  AY+ AH+SQSTQL + NRR+TSFRKRC  MIKQQKTRFYIL RCISML+CW+D DI 
Sbjct: 1  MSLAYAVAHSSQSTQLRIRNRRKTSFRKRCFRMIKQQKTRFYILGRCISMLLCWHDHDIT 60

Query: 89 D 90
          D
Sbjct: 61 D 61

[Close]

BLAST of Carg10875 vs. TrEMBL
Match: tr|A0A087H272|A0A087H272_ARAAL (Uncharacterized protein OS=Arabis alpina OX=50452 GN=AALP_AA4G094200 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.4e-08
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 39 SQSTQLCLGNRRRTSFRKRCLLMIKQQKTRFYILARCISMLMCWNDRDIPD 90
          S  TQ  L N++R SFR RCLLM KQQ+TR YIL RC+SML+CW+D  IPD
Sbjct: 2  SNLTQTKLPNQKR-SFRGRCLLMAKQQRTRLYILRRCVSMLLCWHDHSIPD 51

[Close]

BLAST of Carg10875 vs. TrEMBL
Match: tr|A0A2R6R4H0|A0A2R6R4H0_ACTCH (Lipoyl synthase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc09924 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.2e-08
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 36 AHASQSTQLCLGNRRRTSFRKRCLLMIKQQKTRFYILARCISMLMCWNDRDIPD 90
          +H  Q T     +RRRT FR+RCL + KQQ+ RFYI+ RC+SML+CW+D D+ D
Sbjct: 5  SHFLQFTASRRKSRRRTGFRRRCLAVYKQQRARFYIIGRCVSMLLCWHDHDVSD 58

[Close]

BLAST of Carg10875 vs. TrEMBL
Match: tr|A0A078IZJ6|A0A078IZJ6_BRANA (BnaC08g47130D protein OS=Brassica napus OX=3708 GN=BnaC08g47130D PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-07
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 50 RRTSFRKRCLLMIKQQKTRFYILARCISMLMCWNDRDIPD 90
          R+TSFR RCLLM KQQ+TR YIL RC+SML+CW+D  I D
Sbjct: 11 RKTSFRDRCLLMAKQQRTRLYILQRCVSMLLCWHDHSISD 50

[Close]

BLAST of Carg10875 vs. TrEMBL
Match: tr|A0A2P5B6J8|A0A2P5B6J8_9ROSA (DEVIL-like protein OS=Trema orientalis OX=63057 GN=TorDVL9 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-07
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 0


Query: 47 GNRR---RTSFRKRCLLMIKQQKTRFYILARCISMLMCWNDRDIPD 90
          G RR   +   RKRC+LM+KQQKTRFYIL RC+SML+CW+D  I D
Sbjct: 12 GQRRASQKRGLRKRCMLMVKQQKTRFYILGRCVSMLLCWHDHSISD 57

The following BLAST results are available for this feature:

BLAST of Carg10875 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60637.1	2.1e-16	73.77	hypothetical protein Csa_2G005340 [Cucumis sativus]	[more]
XP_021903113.1	2.3e-10	80.00	uncharacterized protein LOC110818516 [Carica papaya]	[more]
XP_024029977.1	1.1e-09	75.61	uncharacterized protein LOC112094100 [Morus notabilis]	[more]
XP_015898373.1	2.5e-09	55.17	uncharacterized protein LOC107431866 [Ziziphus jujuba] >XP_015902478.1 uncharact...	[more]
XP_017982174.1	7.4e-09	65.38	PREDICTED: uncharacterized protein LOC18588644 [Theobroma cacao]	[more]

BLAST of Carg10875 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G13395.1	8.1e-10	65.00	ROTUNDIFOLIA like 12	[more]
AT2G39705.1	1.6e-05	47.06	ROTUNDIFOLIA like 8	[more]
AT2G36985.1	2.7e-05	47.06	DVL family protein	[more]
AT3G55515.1	1.3e-04	34.69	ROTUNDIFOLIA like 7	[more]
AT4G35783.1	2.3e-04	57.14	ROTUNDIFOLIA like 6	[more]

BLAST of Carg10875 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg10875 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LIV1\|A0A0A0LIV1_CUCSA	1.4e-16	73.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G005340 PE=4 SV=1	[more]
tr\|A0A087H272\|A0A087H272_ARAAL	2.4e-08	64.71	Uncharacterized protein OS=Arabis alpina OX=50452 GN=AALP_AA4G094200 PE=4 SV=1	[more]
tr\|A0A2R6R4H0\|A0A2R6R4H0_ACTCH	3.2e-08	53.70	Lipoyl synthase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc099...	[more]
tr\|A0A078IZJ6\|A0A078IZJ6_BRANA	1.2e-07	70.00	BnaC08g47130D protein OS=Brassica napus OX=3708 GN=BnaC08g47130D PE=4 SV=1	[more]
tr\|A0A2P5B6J8\|A0A2P5B6J8_9ROSA	1.6e-07	63.04	DEVIL-like protein OS=Trema orientalis OX=63057 GN=TorDVL9 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012552	DVL

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10875-RA	Carg10875-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012552	DVL	PFAM	PF08137	DVL	coord: 63..81 e-value: 1.7E-8 score: 34.1
None	No IPR available	PANTHER	PTHR33102:SF12	DVL10	coord: 31..89
None	No IPR available	PANTHER	PTHR33102	FAMILY NOT NAMED	coord: 31..89

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg10875	Csa1G391600	Cucumber (Chinese Long) v2	carcuB0596
Carg10875	Csa2G005340	Cucumber (Chinese Long) v2	carcuB0598
Carg10875	ClCG11G002630	Watermelon (Charleston Gray)	carwcgB0553
Carg10875	CSPI02G01350	Wild cucumber (PI 183967)	carcpiB0603
Carg10875	Cucsa.116220	Cucumber (Gy14) v1	carcgyB0644
Carg10875	Cp4.1LG11g10960	Cucurbita pepo (Zucchini)	carcpeB0809
Carg10875	CsGy2G001360	Cucumber (Gy14) v2	carcgybB0573
Carg10875	CsaV3_1G030850	Cucumber (Chinese Long) v3	carcucB0603
Carg10875	CsaV3_2G002450	Cucumber (Chinese Long) v3	carcucB0605

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg10875	Silver-seed gourd	carcarB044
Carg10875	Silver-seed gourd	carcarB140
Carg10875	Silver-seed gourd	carcarB152
Carg10875	Silver-seed gourd	carcarB315
Carg10875	Cucumber (Gy14) v2	carcgybB0571
Carg10875	Cucurbita maxima (Rimu)	carcmaB0793
Carg10875	Cucurbita maxima (Rimu)	carcmaB0795
Carg10875	Cucurbita maxima (Rimu)	carcmaB0797
Carg10875	Cucurbita maxima (Rimu)	carcmaB0798
Carg10875	Cucurbita maxima (Rimu)	carcmaB0800
Carg10875	Cucurbita maxima (Rimu)	carcmaB0802
Carg10875	Cucurbita moschata (Rifu)	carcmoB0772
Carg10875	Cucurbita moschata (Rifu)	carcmoB0774
Carg10875	Cucurbita moschata (Rifu)	carcmoB0776
Carg10875	Cucurbita moschata (Rifu)	carcmoB0778
Carg10875	Cucurbita moschata (Rifu)	carcmoB0779
Carg10875	Cucurbita pepo (Zucchini)	carcpeB0812
Carg10875	Cucurbita pepo (Zucchini)	carcpeB0813
Carg10875	Cucurbita pepo (Zucchini)	carcpeB0814
Carg10875	Cucurbita pepo (Zucchini)	carcpeB0817
Carg10875	Wild cucumber (PI 183967)	carcpiB0601
Carg10875	Bottle gourd (USVL1VR-Ls)	carlsiB514
Carg10875	Bottle gourd (USVL1VR-Ls)	carlsiB518
Carg10875	Bottle gourd (USVL1VR-Ls)	carlsiB520
Carg10875	Melon (DHL92) v3.5.1	carmeB0572
Carg10875	Melon (DHL92) v3.5.1	carmeB0574
Carg10875	Melon (DHL92) v3.5.1	carmeB0577
Carg10875	Melon (DHL92) v3.6.1	carmedB0581
Carg10875	Melon (DHL92) v3.6.1	carmedB0584
Carg10875	Watermelon (Charleston Gray)	carwcgB0557
Carg10875	Watermelon (Charleston Gray)	carwcgB0559
Carg10875	Watermelon (97103) v1	carwmB0566
Carg10875	Watermelon (97103) v1	carwmB0569
Carg10875	Watermelon (97103) v1	carwmB0570
Carg10875	Watermelon (97103) v2	carwmbB0591
Carg10875	Watermelon (97103) v2	carwmbB0595
Carg10875	Watermelon (97103) v2	carwmbB0597
Carg10875	Wax gourd	carwgoB0676
Carg10875	Wax gourd	carwgoB0685