CsGy2G001320 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G001320
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr2 : 873166 .. 873414 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAAACTGGTGATGAGCATTGGGAAAGTATTTTCATGTTTCATAAATACAACAGATTCTTCCACTTCCTGCAACTTATACAGATTGGAAATTGAAGACAGTAATAATTTTGATCAGAAACAGCCATTAATGCCCAAACAAACGACATCAACAACTCATGATCTTCTCGGATTCAAGGATGTGATTACTCATCAAAACGAAACTCTCCCTCTTCAGTTCAACCCCAAGGTCAGATCACATTCCTAA

mRNA sequence

ATGGGAAAACTGGTGATGAGCATTGGGAAAGTATTTTCATGTTTCATAAATACAACAGATTCTTCCACTTCCTGCAACTTATACAGATTGGAAATTGAAGACAGTAATAATTTTGATCAGAAACAGCCATTAATGCCCAAACAAACGACATCAACAACTCATGATCTTCTCGGATTCAAGGATGTGATTACTCATCAAAACGAAACTCTCCCTCTTCAGTTCAACCCCAAGGTCAGATCACATTCCTAA

Coding sequence (CDS)

ATGGGAAAACTGGTGATGAGCATTGGGAAAGTATTTTCATGTTTCATAAATACAACAGATTCTTCCACTTCCTGCAACTTATACAGATTGGAAATTGAAGACAGTAATAATTTTGATCAGAAACAGCCATTAATGCCCAAACAAACGACATCAACAACTCATGATCTTCTCGGATTCAAGGATGTGATTACTCATCAAAACGAAACTCTCCCTCTTCAGTTCAACCCCAAGGTCAGATCACATTCCTAA

Protein sequence

MGKLVMSIGKVFSCFINTTDSSTSCNLYRLEIEDSNNFDQKQPLMPKQTTSTTHDLLGFKDVITHQNETLPLQFNPKVRSHS

Homology

[Close]

BLAST of CsGy2G001320 vs. NCBI nr
Match: KGN60632.1 (hypothetical protein Csa_2G005290 [Cucumis sativus])

HSP 1 Score: 159.1 bits (401), Expect = 6.5e-36
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MGKLVMSIGKVFSCFINTTDSSTSCNLYRLEIEDSNNFDQKQPLMPKQTTSTTHDLLGFK 60
          MGKLVMSIGKVFSCFINTTDSSTSCNLYRLEIEDSNNFDQKQPLMPKQTTSTTHDLLGFK
Sbjct: 1  MGKLVMSIGKVFSCFINTTDSSTSCNLYRLEIEDSNNFDQKQPLMPKQTTSTTHDLLGFK 60

Query: 61 DVITHQNETLPLQFNPK 78
          DVITHQNETLPLQFNPK
Sbjct: 61 DVITHQNETLPLQFNPK 77

[Close]

BLAST of CsGy2G001320 vs. NCBI nr
Match: XP_008458177.1 (PREDICTED: uncharacterized protein LOC103497691 [Cucumis melo])

HSP 1 Score: 141.0 bits (354), Expect = 1.8e-30
Identity = 73/80 (91.25%), Postives = 75/80 (93.75%), Query Frame = 0


Query: 1  MGKLVMSIGKVFSCFINTTD-SSTSCNLYRLEIEDSNNFDQKQPLMPKQTTSTTHDLLGF 60
          MGKLV+SIGKVFSCFINTTD SSTSC LYR EIEDSNNFDQKQPLM KQTTSTTHDLLGF
Sbjct: 1  MGKLVLSIGKVFSCFINTTDSSSTSCCLYRFEIEDSNNFDQKQPLMAKQTTSTTHDLLGF 60

Query: 61 KDVITHQNETL-PLQFNPKV 79
          KDVITHQN+TL PLQFNPKV
Sbjct: 61 KDVITHQNKTLRPLQFNPKV 80

[Close]

BLAST of CsGy2G001320 vs. NCBI nr
Match: XP_022999545.1 (protein SODIUM POTASSIUM ROOT DEFECTIVE 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 55.8 bits (133), Expect = 7.8e-05
Identity = 41/78 (52.56%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 1  MGKLVMSIGKVFSCFINTTDSSTSCNLYRLEIEDSNNFDQKQPLMPKQTTSTTHDLLGFK 60
          MGK V  IGKVFSCF+N+  +S+SC     EIE    F+ KQPLMP Q  S    LL F 
Sbjct: 1  MGKAV-GIGKVFSCFMNSR-ASSSC----FEIE--GTFEPKQPLMPNQPNS---HLLRFN 60

Query: 61 DVITHQNETLPLQFNPKV 79
          DVI+H N+    Q NPKV
Sbjct: 61 DVISHTNQ----QTNPKV 63

[Close]

BLAST of CsGy2G001320 vs. NCBI nr
Match: XP_022999546.1 (uncharacterized protein LOC111493873 isoform X2 [Cucurbita maxima])

HSP 1 Score: 55.8 bits (133), Expect = 7.8e-05
Identity = 41/78 (52.56%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 1  MGKLVMSIGKVFSCFINTTDSSTSCNLYRLEIEDSNNFDQKQPLMPKQTTSTTHDLLGFK 60
          MGK V  IGKVFSCF+N+  +S+SC     EIE    F+ KQPLMP Q  S    LL F 
Sbjct: 1  MGKAV-GIGKVFSCFMNSR-ASSSC----FEIE--GTFEPKQPLMPNQPNS---HLLRFN 60

Query: 61 DVITHQNETLPLQFNPKV 79
          DVI+H N+    Q NPKV
Sbjct: 61 DVISHTNQ----QTNPKV 63

[Close]

BLAST of CsGy2G001320 vs. NCBI nr
Match: XP_022946349.1 (uncharacterized protein LOC111450448 isoform X2 [Cucurbita moschata])

HSP 1 Score: 52.8 bits (125), Expect = 6.6e-04
Identity = 38/78 (48.72%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 1  MGKLVMSIGKVFSCFINTTDSSTSCNLYRLEIEDSNNFDQKQPLMPKQTTSTTHDLLGFK 60
          MGK V  IGKVFSCF+N + +S+SC  +++E      F+ KQPLMP Q  S    LL   
Sbjct: 1  MGKAV-GIGKVFSCFMN-SGASSSC--FQIEA----TFEPKQPLMPNQPNS---HLLRLN 60

Query: 61 DVITHQNETLPLQFNPKV 79
          DVI+H N+    Q NPKV
Sbjct: 61 DVISHTNQ----QANPKV 63

[Close]

BLAST of CsGy2G001320 vs. TrEMBL
Match: tr|A0A0A0LIU8|A0A0A0LIU8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G005290 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 4.3e-36
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MGKLVMSIGKVFSCFINTTDSSTSCNLYRLEIEDSNNFDQKQPLMPKQTTSTTHDLLGFK 60
          MGKLVMSIGKVFSCFINTTDSSTSCNLYRLEIEDSNNFDQKQPLMPKQTTSTTHDLLGFK
Sbjct: 1  MGKLVMSIGKVFSCFINTTDSSTSCNLYRLEIEDSNNFDQKQPLMPKQTTSTTHDLLGFK 60

Query: 61 DVITHQNETLPLQFNPK 78
          DVITHQNETLPLQFNPK
Sbjct: 61 DVITHQNETLPLQFNPK 77

[Close]

BLAST of CsGy2G001320 vs. TrEMBL
Match: tr|A0A1S3C8H9|A0A1S3C8H9_CUCME (uncharacterized protein LOC103497691 OS=Cucumis melo OX=3656 GN=LOC103497691 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.2e-30
Identity = 73/80 (91.25%), Postives = 75/80 (93.75%), Query Frame = 0


Query: 1  MGKLVMSIGKVFSCFINTTD-SSTSCNLYRLEIEDSNNFDQKQPLMPKQTTSTTHDLLGF 60
          MGKLV+SIGKVFSCFINTTD SSTSC LYR EIEDSNNFDQKQPLM KQTTSTTHDLLGF
Sbjct: 1  MGKLVLSIGKVFSCFINTTDSSSTSCCLYRFEIEDSNNFDQKQPLMAKQTTSTTHDLLGF 60

Query: 61 KDVITHQNETL-PLQFNPKV 79
          KDVITHQN+TL PLQFNPKV
Sbjct: 61 KDVITHQNKTLRPLQFNPKV 80

The following BLAST results are available for this feature:

BLAST of CsGy2G001320 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60632.1	6.5e-36	100.00	hypothetical protein Csa_2G005290 [Cucumis sativus]	[more]
XP_008458177.1	1.8e-30	91.25	PREDICTED: uncharacterized protein LOC103497691 [Cucumis melo]	[more]
XP_022999545.1	7.8e-05	52.56	protein SODIUM POTASSIUM ROOT DEFECTIVE 1-like isoform X1 [Cucurbita maxima]	[more]
XP_022999546.1	7.8e-05	52.56	uncharacterized protein LOC111493873 isoform X2 [Cucurbita maxima]	[more]
XP_022946349.1	6.6e-04	48.72	uncharacterized protein LOC111450448 isoform X2 [Cucurbita moschata]	[more]

BLAST of CsGy2G001320 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy2G001320 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy2G001320 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LIU8\|A0A0A0LIU8_CUCSA	4.3e-36	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G005290 PE=4 SV=1	[more]
tr\|A0A1S3C8H9\|A0A1S3C8H9_CUCME	1.2e-30	91.25	uncharacterized protein LOC103497691 OS=Cucumis melo OX=3656 GN=LOC103497691 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030001	metal ion transport
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G001320.1	CsGy2G001320.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy2G001320	Csa2G005290	Cucumber (Chinese Long) v2	cgybcuB056
CsGy2G001320	CSPI02G01290	Wild cucumber (PI 183967)	cgybcpiB056
CsGy2G001320	Lsi11G002740	Bottle gourd (USVL1VR-Ls)	cgyblsiB089
CsGy2G001320	MELO3C031348.2	Melon (DHL92) v3.6.1	cgybmedB119
CsGy2G001320	CsaV3_2G002400	Cucumber (Chinese Long) v3	cgybcucB064
CsGy2G001320	Cla97C11G209050	Watermelon (97103) v2	cgybwmbB098
CsGy2G001320	Bhi06G001639	Wax gourd	cgybwgoB126
CsGy2G001320	Carg10872	Silver-seed gourd	carcgybB0573

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy2G001320	Cucurbita pepo (Zucchini)	cgybcpeB168
CsGy2G001320	Cucurbita maxima (Rimu)	cgybcmaB154
CsGy2G001320	Cucurbita maxima (Rimu)	cgybcmaB163
CsGy2G001320	Cucurbita maxima (Rimu)	cgybcmaB178
CsGy2G001320	Cucurbita maxima (Rimu)	cgybcmaB257
CsGy2G001320	Cucurbita moschata (Rifu)	cgybcmoB146
CsGy2G001320	Cucurbita moschata (Rifu)	cgybcmoB155
CsGy2G001320	Cucurbita moschata (Rifu)	cgybcmoB170
CsGy2G001320	Cucurbita moschata (Rifu)	cgybcmoB243
CsGy2G001320	Cucurbita pepo (Zucchini)	cgybcpeB204
CsGy2G001320	Cucurbita pepo (Zucchini)	cgybcpeB232
CsGy2G001320	Cucurbita pepo (Zucchini)	cgybcpeB272
CsGy2G001320	Bottle gourd (USVL1VR-Ls)	cgyblsiB120
CsGy2G001320	Melon (DHL92) v3.5.1	cgybmeB095
CsGy2G001320	Melon (DHL92) v3.5.1	cgybmeB121
CsGy2G001320	Melon (DHL92) v3.6.1	cgybmedB096
CsGy2G001320	Watermelon (Charleston Gray)	cgybwcgB094
CsGy2G001320	Watermelon (Charleston Gray)	cgybwcgB140
CsGy2G001320	Watermelon (97103) v1	cgybwmB154
CsGy2G001320	Watermelon (97103) v1	cgybwmB161
CsGy2G001320	Silver-seed gourd	carcgybB0041
CsGy2G001320	Silver-seed gourd	carcgybB0137
CsGy2G001320	Silver-seed gourd	carcgybB0292
CsGy2G001320	Cucumber (Chinese Long) v3	cgybcucB059
CsGy2G001320	Watermelon (97103) v2	cgybwmbB136
CsGy2G001320	Wax gourd	cgybwgoB205