CsGy1G030200 (gene) Cucumber (Gy14) v2

NameCsGy1G030200
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionL10-interacting MYB domain-containing protein-like
LocationChr1 : 28377174 .. 28377497 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATATGGACAGACTTGGTTGGAAACAACACAGGCTTGGGTTGGGATTCATCAAGACAAACTATTGATGCACCAACCCAGTGGTGGGAAGAGAATTTAAAGGTATATCATTTATTTATTAGAAATGAAAATTATAATTAAATACTTCTTAAATCAATATCTTCTAGGTTAAGGCCGAGACAGCAAAATTTCGAGCAAAGGGGTTGCAAAATGCAGACCAATTAGATATTCTTTTTAAAGATATTGTCGTTACAGGTGATGGAGCATGGACACCATCTTAAAGATTTGTACCTCAAAGTAGTGAAGACAATTCATTTAGACATGTAG

mRNA sequence

ATATGGACAGACTTGGTTGGAAACAACACAGGCTTGGGTTGGGATTCATCAAGACAAACTATTGATGCACCAACCCAGTGGTGGGAAGAGAATTTAAAGGTTAAGGCCGAGACAGCAAAATTTCGAGCAAAGGGGTTGCAAAATGCAGACCAATTAGATATTCTTTTTAAAGATATTGTCGTGATGGAGCATGGACACCATCTTAAAGATTTGTACCTCAAAGTAGTGAAGACAATTCATTTAGACATGTAG

Coding sequence (CDS)

ATATGGACAGACTTGGTTGGAAACAACACAGGCTTGGGTTGGGATTCATCAAGACAAACTATTGATGCACCAACCCAGTGGTGGGAAGAGAATTTAAAGGTTAAGGCCGAGACAGCAAAATTTCGAGCAAAGGGGTTGCAAAATGCAGACCAATTAGATATTCTTTTTAAAGATATTGTCGTGATGGAGCATGGACACCATCTTAAAGATTTGTACCTCAAAGTAGTGAAGACAATTCATTTAGACATGTAG

Protein sequence

IWTDLVGNNTGLGWDSSRQTIDAPTQWWEENLKVKAETAKFRAKGLQNADQLDILFKDIVVMEHGHHLKDLYLKVVKTIHLDM
BLAST of CsGy1G030200 vs. NCBI nr
Match: XP_016900494.1 (PREDICTED: L10-interacting MYB domain-containing protein-like [Cucumis melo])

HSP 1 Score: 123.2 bits (308), Expect = 4.0e-25
Identity = 57/65 (87.69%), Postives = 58/65 (89.23%), Query Frame = 0

Query: 1  IWTDLVGNNTGLGWDSSRQTIDAPTQWWEENLKVKAETAKFRAKGLQNADQLDILFKDIV 60
          IWTDLVGNNTGLGWDS RQTIDAPT+WWEENLKVK E AKFRA GLQNADQLDILFKDI 
Sbjct: 14 IWTDLVGNNTGLGWDSLRQTIDAPTEWWEENLKVKPEAAKFRANGLQNADQLDILFKDIT 73

Query: 61 VMEHG 66
          V E G
Sbjct: 74 VTEDG 78

BLAST of CsGy1G030200 vs. NCBI nr
Match: XP_008441646.2 (PREDICTED: LOW QUALITY PROTEIN: L10-interacting MYB domain-containing protein-like, partial [Cucumis melo])

HSP 1 Score: 111.3 bits (277), Expect = 1.6e-21
Identity = 53/65 (81.54%), Postives = 56/65 (86.15%), Query Frame = 0

Query: 1  IWTDLVGNNTGLGWDSSRQTIDAPTQWWEENLKVKAETAKFRAKGLQNADQLDILFKDIV 60
          I TDLVGNNTGL WDS RQTID+PT+WWEENLKVK E AKFRAKGLQNADQLDILFK+I 
Sbjct: 33 ILTDLVGNNTGLSWDSLRQTIDSPTRWWEENLKVKLEEAKFRAKGLQNADQLDILFKNIA 92

Query: 61 VMEHG 66
          V   G
Sbjct: 93 VTGDG 97

BLAST of CsGy1G030200 vs. NCBI nr
Match: XP_022159819.1 (L10-interacting MYB domain-containing protein-like [Momordica charantia] >XP_022159820.1 L10-interacting MYB domain-containing protein-like [Momordica charantia])

HSP 1 Score: 86.3 bits (212), Expect = 5.4e-14
Identity = 38/61 (62.30%), Postives = 45/61 (73.77%), Query Frame = 0

Query: 1   IWTDLVGNNTGLGWDSSRQTIDAPTQWWEENLKVKAETAKFRAKGLQNADQLDILFKDIV 60
           +W DLVG   GL WD  RQTI+A TQWW+  LKV  E AKFRA+GLQN + L+ILFKD+ 
Sbjct: 83  VWNDLVGTEKGLEWDPLRQTIEATTQWWDNKLKVLPEAAKFRARGLQNVELLNILFKDVA 142

Query: 61  V 62
           V
Sbjct: 143 V 143

BLAST of CsGy1G030200 vs. NCBI nr
Match: XP_023549677.1 (L10-interacting MYB domain-containing protein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 86.3 bits (212), Expect = 5.4e-14
Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 0

Query: 1   IWTDLVGNNTGLGWDSSRQTIDAPTQWWEENLKVKAETAKFRAKGLQNADQLDILFKDIV 60
           +W DL+G +  LGWD+ RQTIDA +QWW+  LK+  E  KFRAKGLQN + L+ILFKD+ 
Sbjct: 87  VWNDLIGTDKQLGWDTQRQTIDATSQWWDSKLKILPEATKFRAKGLQNVELLNILFKDVA 146

Query: 61  VMEHG 66
               G
Sbjct: 147 AGNGG 151

BLAST of CsGy1G030200 vs. NCBI nr
Match: XP_019074421.1 (PREDICTED: L10-interacting MYB domain-containing protein-like [Vitis vinifera])

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-13
Identity = 35/65 (53.85%), Postives = 45/65 (69.23%), Query Frame = 0

Query: 1   IWTDLVGNNTGLGWDSSRQTIDAPTQWWEENLKVKAETAKFRAKGLQNADQLDILFKDIV 60
           +W  L+G  TGLGWD  RQTI+A  +WW++ LK   E  KF+ KGL+N +QLDILFKDI+
Sbjct: 60  LWNTLIGKETGLGWDPMRQTINASNEWWDKKLKENPEAIKFKTKGLKNVEQLDILFKDII 119

Query: 61  VMEHG 66
               G
Sbjct: 120 ATGEG 124

BLAST of CsGy1G030200 vs. TrEMBL
Match: tr|A0A1S4DWY7|A0A1S4DWY7_CUCME (L10-interacting MYB domain-containing protein-like OS=Cucumis melo OX=3656 GN=LOC103491789 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.7e-25
Identity = 57/65 (87.69%), Postives = 58/65 (89.23%), Query Frame = 0

Query: 1  IWTDLVGNNTGLGWDSSRQTIDAPTQWWEENLKVKAETAKFRAKGLQNADQLDILFKDIV 60
          IWTDLVGNNTGLGWDS RQTIDAPT+WWEENLKVK E AKFRA GLQNADQLDILFKDI 
Sbjct: 14 IWTDLVGNNTGLGWDSLRQTIDAPTEWWEENLKVKPEAAKFRANGLQNADQLDILFKDIT 73

Query: 61 VMEHG 66
          V E G
Sbjct: 74 VTEDG 78

BLAST of CsGy1G030200 vs. TrEMBL
Match: tr|A0A1S3B4J4|A0A1S3B4J4_CUCME (LOW QUALITY PROTEIN: L10-interacting MYB domain-containing protein-like OS=Cucumis melo OX=3656 GN=LOC103485728 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.0e-21
Identity = 53/65 (81.54%), Postives = 56/65 (86.15%), Query Frame = 0

Query: 1  IWTDLVGNNTGLGWDSSRQTIDAPTQWWEENLKVKAETAKFRAKGLQNADQLDILFKDIV 60
          I TDLVGNNTGL WDS RQTID+PT+WWEENLKVK E AKFRAKGLQNADQLDILFK+I 
Sbjct: 33 ILTDLVGNNTGLSWDSLRQTIDSPTRWWEENLKVKLEEAKFRAKGLQNADQLDILFKNIA 92

Query: 61 VMEHG 66
          V   G
Sbjct: 93 VTGDG 97

BLAST of CsGy1G030200 vs. TrEMBL
Match: tr|A0A0A0KKV6|A0A0A0KKV6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G167170 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.0e-13
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 0

Query: 1   IWTDLVGNNTGLGWDSSRQTIDAPTQWWEENLKVKAETAKFRAKGLQNADQLDILFKDIV 60
           +W DL+GN   +GWD  RQTIDA +QWW+  LKV  E AKFRAKGLQ+ + L+ILFK + 
Sbjct: 81  VWNDLIGNEKEIGWDPLRQTIDATSQWWDHKLKVLPEAAKFRAKGLQSLELLNILFKGVA 140

Query: 61  V 62
           +
Sbjct: 141 I 141

BLAST of CsGy1G030200 vs. TrEMBL
Match: tr|A0A1S3AT15|A0A1S3AT15_CUCME (L10-interacting MYB domain-containing protein-like OS=Cucumis melo OX=3656 GN=LOC103482538 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.2e-13
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 0

Query: 1   IWTDLVGNNTGLGWDSSRQTIDAPTQWWEENLKVKAETAKFRAKGLQNADQLDILFKDIV 60
           +W DL+ N   +GWD  RQTIDA +QWW+  LKV  E AKFRAKGLQN + L+ILFK + 
Sbjct: 83  VWNDLIRNEKEIGWDPLRQTIDATSQWWDHKLKVLPEAAKFRAKGLQNVELLNILFKGVA 142

Query: 61  V 62
           +
Sbjct: 143 I 143

BLAST of CsGy1G030200 vs. TrEMBL
Match: tr|A5AXN9|A5AXN9_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_023669 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.0e-12
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 0

Query: 5   LVGNNTGLGWDSSRQTIDAPTQWWEENLKVKAETAKFRAKGLQNADQLDILFKDIVVMEH 64
           L+G  TGLGWD  RQTI+A  +WW++ LK   E  KF+ KGL+N +QLDILFKDI+    
Sbjct: 129 LIGKETGLGWDPMRQTINASNEWWDKKLKENLEAIKFKTKGLKNVEQLDILFKDIIATGE 188

Query: 65  G 66
           G
Sbjct: 189 G 189

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_016900494.14.0e-2587.69PREDICTED: L10-interacting MYB domain-containing protein-like [Cucumis melo][more]
XP_008441646.21.6e-2181.54PREDICTED: LOW QUALITY PROTEIN: L10-interacting MYB domain-containing protein-li... [more]
XP_022159819.15.4e-1462.30L10-interacting MYB domain-containing protein-like [Momordica charantia] >XP_022... [more]
XP_023549677.15.4e-1455.38L10-interacting MYB domain-containing protein-like [Cucurbita pepo subsp. pepo][more]
XP_019074421.11.2e-1353.85PREDICTED: L10-interacting MYB domain-containing protein-like [Vitis vinifera][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S4DWY7|A0A1S4DWY7_CUCME2.7e-2587.69L10-interacting MYB domain-containing protein-like OS=Cucumis melo OX=3656 GN=LO... [more]
tr|A0A1S3B4J4|A0A1S3B4J4_CUCME1.0e-2181.54LOW QUALITY PROTEIN: L10-interacting MYB domain-containing protein-like OS=Cucum... [more]
tr|A0A0A0KKV6|A0A0A0KKV6_CUCSA3.0e-1357.38Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G167170 PE=4 SV=1[more]
tr|A0A1S3AT15|A0A1S3AT15_CUCME5.2e-1357.38L10-interacting MYB domain-containing protein-like OS=Cucumis melo OX=3656 GN=LO... [more]
tr|A5AXN9|A5AXN9_VITVI2.0e-1255.74Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_023669 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G030200.1CsGy1G030200.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33068FAMILY NOT NAMEDcoord: 2..64

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy1G030200CsaV3_1G043330Cucumber (Chinese Long) v3cgybcucB001
The following gene(s) are paralogous to this gene:

None