CsGy1G023650 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G023650
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6
Location	Chr1 : 22433509 .. 22434177 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCAGTGTCTGAATCCGGCGGGGGTGGTGGTGCATCGGAGAGCACGGCGGAGGGTTGTTCATCGGCAACGGGAGGGGGAGGGGGAGGGGGAGCGGCGGTGGCTCCACCGAGCCGATATGAATCTCAAAAAAGAAGAGATTGGAACACTTTCTTACAATATTTGAAGAACCACAAGCCGCCACTGTGTTTAGCTCGATGCAGTGGTGCTCACGTGATCGAATTCTTGAAATATTTGGATCAGTTCGGAAAGACGAAGGTCCATGCTTCCCCCTGCCCTTATTTCGGTCACCCAAATCCACCTGCTCCCTGCCCCTGCCCCCTCAAACAAGCTTGGGGTAGCCTCGACGCTTTGATCGGCCGCCTCCGTGCCGCTTACGAAGAGAACGGTGGCCGCCCTGAATCCAACCCATTTGCCGCACGTGCCGTCAGGATTTATCTCCGTGAGGTTCGTGAAGCTCAGGCTAAAGCCAGAGGAATTCCTTACGAGAAAAAGAAACGGAAAAGACCCGCCCCCACCGCCCCTCCCCCTGCAGAGACTAGTACCTCCGCCACCACCACCCCCGCAGATAATCAGCCTGAAACAACCGCTGGTGGCGGTGGCGGTGGCGATGATCCCGCCCTTCCTCCTCCGCCGTCCACAACCGCCGCTTCCACCACCGTATAG

mRNA sequence

ATGGATTCAGTGTCTGAATCCGGCGGGGGTGGTGGTGCATCGGAGAGCACGGCGGAGGGTTGTTCATCGGCAACGGGAGGGGGAGGGGGAGGGGGAGCGGCGGTGGCTCCACCGAGCCGATATGAATCTCAAAAAAGAAGAGATTGGAACACTTTCTTACAATATTTGAAGAACCACAAGCCGCCACTGTGTTTAGCTCGATGCAGTGGTGCTCACGTGATCGAATTCTTGAAATATTTGGATCAGTTCGGAAAGACGAAGGTCCATGCTTCCCCCTGCCCTTATTTCGGTCACCCAAATCCACCTGCTCCCTGCCCCTGCCCCCTCAAACAAGCTTGGGGTAGCCTCGACGCTTTGATCGGCCGCCTCCGTGCCGCTTACGAAGAGAACGGTGGCCGCCCTGAATCCAACCCATTTGCCGCACGTGCCGTCAGGATTTATCTCCGTGAGGTTCGTGAAGCTCAGGCTAAAGCCAGAGGAATTCCTTACGAGAAAAAGAAACGGAAAAGACCCGCCCCCACCGCCCCTCCCCCTGCAGAGACTAGTACCTCCGCCACCACCACCCCCGCAGATAATCAGCCTGAAACAACCGCTGGTGGCGGTGGCGGTGGCGATGATCCCGCCCTTCCTCCTCCGCCGTCCACAACCGCCGCTTCCACCACCGTATAG

Coding sequence (CDS)

ATGGATTCAGTGTCTGAATCCGGCGGGGGTGGTGGTGCATCGGAGAGCACGGCGGAGGGTTGTTCATCGGCAACGGGAGGGGGAGGGGGAGGGGGAGCGGCGGTGGCTCCACCGAGCCGATATGAATCTCAAAAAAGAAGAGATTGGAACACTTTCTTACAATATTTGAAGAACCACAAGCCGCCACTGTGTTTAGCTCGATGCAGTGGTGCTCACGTGATCGAATTCTTGAAATATTTGGATCAGTTCGGAAAGACGAAGGTCCATGCTTCCCCCTGCCCTTATTTCGGTCACCCAAATCCACCTGCTCCCTGCCCCTGCCCCCTCAAACAAGCTTGGGGTAGCCTCGACGCTTTGATCGGCCGCCTCCGTGCCGCTTACGAAGAGAACGGTGGCCGCCCTGAATCCAACCCATTTGCCGCACGTGCCGTCAGGATTTATCTCCGTGAGGTTCGTGAAGCTCAGGCTAAAGCCAGAGGAATTCCTTACGAGAAAAAGAAACGGAAAAGACCCGCCCCCACCGCCCCTCCCCCTGCAGAGACTAGTACCTCCGCCACCACCACCCCCGCAGATAATCAGCCTGAAACAACCGCTGGTGGCGGTGGCGGTGGCGATGATCCCGCCCTTCCTCCTCCGCCGTCCACAACCGCCGCTTCCACCACCGTATAG

Protein sequence

MDSVSESGGGGGASESTAEGCSSATGGGGGGGAAVAPPSRYESQKRRDWNTFLQYLKNHKPPLCLARCSGAHVIEFLKYLDQFGKTKVHASPCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAYEENGGRPESNPFAARAVRIYLREVREAQAKARGIPYEKKKRKRPAPTAPPPAETSTSATTTPADNQPETTAGGGGGGDDPALPPPPSTTAASTTV

Homology

[Close]

BLAST of CsGy1G023650 vs. NCBI nr
Match: XP_008457336.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like [Cucumis melo])

HSP 1 Score: 244.6 bits (623), Expect = 3.2e-61
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 42  ESQKRRDWNTFLQYLKNHKPPLCLARCSGAHVIEFLKYLDQFGKTKVHASPCPYFGHPNX 101
           ESQKRRDWNTFLQYLKNHKPPLCLARCSGAHVIEFLKYLDQFGKTKVHASPCPYFGHPNX
Sbjct: 41  ESQKRRDWNTFLQYLKNHKPPLCLARCSGAHVIEFLKYLDQFGKTKVHASPCPYFGHPNX 100

Query: 102 XXXXXXXLKQAWGSLDALIGRLRAAYEENGGRPESNPFAARAVRIYLREVREAQAKARGI 161
           XXXXXXXLKQAWGSLDALIGRLRAAYEENGGRPESNPFAARAVRIYLREVREAQAKARGI
Sbjct: 101 XXXXXXXLKQAWGSLDALIGRLRAAYEENGGRPESNPFAARAVRIYLREVREAQAKARGI 160

Query: 162 PYE 165
           PYE
Sbjct: 161 PYE 163

[Close]

BLAST of CsGy1G023650 vs. NCBI nr
Match: XP_022998564.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like [Cucurbita maxima])

HSP 1 Score: 235.7 bits (600), Expect = 1.5e-58
Identity = 120/123 (97.56%), Postives = 120/123 (97.56%), Query Frame = 0


Query: 42  ESQKRRDWNTFLQYLKNHKPPLCLARCSGAHVIEFLKYLDQFGKTKVHASPCPYFGHPNX 101
           ESQKRRDWNTFLQYLKNHKPPL LARCSGAHVIEFLKYLDQFGKTKVH S CPYFGHPNX
Sbjct: 37  ESQKRRDWNTFLQYLKNHKPPLSLARCSGAHVIEFLKYLDQFGKTKVHGSGCPYFGHPNX 96

Query: 102 XXXXXXXLKQAWGSLDALIGRLRAAYEENGGRPESNPFAARAVRIYLREVREAQAKARGI 161
           XXXXXXXLKQAWGSLDALIGRLRAAYEENGGRPESNPFAARAVRIYLREVREAQAKARGI
Sbjct: 97  XXXXXXXLKQAWGSLDALIGRLRAAYEENGGRPESNPFAARAVRIYLREVREAQAKARGI 156

Query: 162 PYE 165
           PYE
Sbjct: 157 PYE 159

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BLAST of CsGy1G023650 vs. NCBI nr
Match: XP_008237657.2 (PREDICTED: LOW QUALITY PROTEIN: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 [Prunus mume])

HSP 1 Score: 233.4 bits (594), Expect = 7.4e-58
Identity = 110/123 (89.43%), Postives = 112/123 (91.06%), Query Frame = 0


Query: 42  ESQKRRDWNTFLQYLKNHKPPLCLARCSGAHVIEFLKYLDQFGKTKVHASPCPYFGHPNX 101
           ESQKRRDWNTFLQYLKNHKPPL LARCSGAHVIEFLKYLDQFGKTKVHA+ CPYFGHPN 
Sbjct: 55  ESQKRRDWNTFLQYLKNHKPPLTLARCSGAHVIEFLKYLDQFGKTKVHAAGCPYFGHPNP 114

Query: 102 XXXXXXXLKQAWGSLDALIGRLRAAYEENGGRPESNPFAARAVRIYLREVREAQAKARGI 161
                  LKQAWGSLDALIGRLRAAYEENGGRPESNPF ARAVRIYLREVRE+QAKARGI
Sbjct: 115 PAPCACPLKQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRIYLREVRESQAKARGI 174

Query: 162 PYE 165
           PYE
Sbjct: 175 PYE 177

[Close]

BLAST of CsGy1G023650 vs. NCBI nr
Match: XP_022970622.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like [Cucurbita maxima])

HSP 1 Score: 233.4 bits (594), Expect = 7.4e-58
Identity = 118/123 (95.93%), Postives = 121/123 (98.37%), Query Frame = 0


Query: 42  ESQKRRDWNTFLQYLKNHKPPLCLARCSGAHVIEFLKYLDQFGKTKVHASPCPYFGHPNX 101
           ESQKRRDWNTFLQYLKNHKPPL LARCSGAHVIEFLKYLDQFGKTKVH+S CPYFGHPNX
Sbjct: 42  ESQKRRDWNTFLQYLKNHKPPLSLARCSGAHVIEFLKYLDQFGKTKVHSSGCPYFGHPNX 101

Query: 102 XXXXXXXLKQAWGSLDALIGRLRAAYEENGGRPESNPFAARAVRIYLREVREAQAKARGI 161
           XXXXXXXLKQAWGSLDALIGRLRAAYEENGGRPESNPFAARAVRI+LREVRE+QAKARGI
Sbjct: 102 XXXXXXXLKQAWGSLDALIGRLRAAYEENGGRPESNPFAARAVRIFLREVRESQAKARGI 161

Query: 162 PYE 165
           PYE
Sbjct: 162 PYE 164

[Close]

BLAST of CsGy1G023650 vs. NCBI nr
Match: XP_007205822.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 [Prunus persica] >ONH99813.1 hypothetical protein PRUPE_6G051600 [Prunus persica])

HSP 1 Score: 233.0 bits (593), Expect = 9.6e-58
Identity = 110/123 (89.43%), Postives = 111/123 (90.24%), Query Frame = 0


Query: 42  ESQKRRDWNTFLQYLKNHKPPLCLARCSGAHVIEFLKYLDQFGKTKVHASPCPYFGHPNX 101
           ESQKRRDWNTFLQYLKNHKPPL LARCSGAHVIEFLKYLDQFGKTKVHA+ CPYFGHPN 
Sbjct: 56  ESQKRRDWNTFLQYLKNHKPPLTLARCSGAHVIEFLKYLDQFGKTKVHAAGCPYFGHPNP 115

Query: 102 XXXXXXXLKQAWGSLDALIGRLRAAYEENGGRPESNPFAARAVRIYLREVREAQAKARGI 161
                  LKQAWGSLDALIGRLRAAYEENGGRPESNPF ARAVRIYLREVRE QAKARGI
Sbjct: 116 PAPCACPLKQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRIYLREVREGQAKARGI 175

Query: 162 PYE 165
           PYE
Sbjct: 176 PYE 178

[Close]

BLAST of CsGy1G023650 vs. TAIR10
Match: AT1G07090.1 (Protein of unknown function (DUF640))

HSP 1 Score: 226.5 bits (576), Expect = 1.6e-59
Identity = 106/123 (86.18%), Postives = 110/123 (89.43%), Query Frame = 0


Query: 42  ESQKRRDWNTFLQYLKNHKPPLCLARCSGAHVIEFLKYLDQFGKTKVHASPCPYFGHPNX 101
           ESQKRRDWNTFLQYLKNHKPPL L+RCSGAHVIEFLKYLDQFGKTKVH + CPYFGH   
Sbjct: 33  ESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAACPYFGHQQP 92

Query: 102 XXXXXXXLKQAWGSLDALIGRLRAAYEENGGRPESNPFAARAVRIYLREVREAQAKARGI 161
                  LKQAWGSLDALIGRLRAAYEENGGRP+SNPFAARAVRIYLREVRE+QAKARGI
Sbjct: 93  PSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRESQAKARGI 152

Query: 162 PYE 165
           PYE
Sbjct: 153 PYE 155

[Close]

BLAST of CsGy1G023650 vs. TAIR10
Match: AT5G58500.1 (Protein of unknown function (DUF640))

HSP 1 Score: 210.7 bits (535), Expect = 9.3e-55
Identity = 99/124 (79.84%), Postives = 109/124 (87.90%), Query Frame = 0


Query: 42  ESQKRRDWNTFLQYLKNHKPPLCLARCSGAHVIEFLKYLDQFGKTKVHASPCPYFGHPNX 101
           ESQKRRDWNTFLQYL+NHKPPL L+RCSGAHV+EFLKYLDQFGKTKVHA+ CP+FG PN 
Sbjct: 21  ESQKRRDWNTFLQYLRNHKPPLNLSRCSGAHVLEFLKYLDQFGKTKVHATACPFFGQPNP 80

Query: 102 XXXXXXXLKQAWGSLDALIGRLRAAYEE-NGGRPESNPFAARAVRIYLREVREAQAKARG 161
                  LKQAWGSLDALIGRLRAA+EE  GG PESNPFAA+AVRIYL+EVR+ QAKARG
Sbjct: 81  PSQCTCPLKQAWGSLDALIGRLRAAFEEIGGGLPESNPFAAKAVRIYLKEVRQTQAKARG 140

Query: 162 IPYE 165
           IPY+
Sbjct: 141 IPYD 144

[Close]

BLAST of CsGy1G023650 vs. TAIR10
Match: AT3G23290.2 (Protein of unknown function (DUF640))

HSP 1 Score: 208.4 bits (529), Expect = 4.6e-54
Identity = 94/123 (76.42%), Postives = 107/123 (86.99%), Query Frame = 0


Query: 42  ESQKRRDWNTFLQYLKNHKPPLCLARCSGAHVIEFLKYLDQFGKTKVHASPCPYFGHPNX 101
           E+QKRRDWNTF QYL+NH+PPL L+RCSGAHV+EFL+YLDQFGKTKVH   CP+FGHPN 
Sbjct: 50  ENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNP 109

Query: 102 XXXXXXXLKQAWGSLDALIGRLRAAYEENGGRPESNPFAARAVRIYLREVREAQAKARGI 161
                  L+QAWGSLDALIGRLRAA+EENGG PE+NPF ARAVR+YLREVR++QAKARGI
Sbjct: 110 PAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGI 169

Query: 162 PYE 165
            YE
Sbjct: 170 SYE 172

[Close]

BLAST of CsGy1G023650 vs. TAIR10
Match: AT2G31160.1 (Protein of unknown function (DUF640))

HSP 1 Score: 200.7 bits (509), Expect = 9.6e-52
Identity = 97/123 (78.86%), Postives = 114/123 (92.68%), Query Frame = 0


Query: 42  ESQKRRDWNTFLQYLKNHKPPLCLARCSGAHVIEFLKYLDQFGKTKVHASPCPYFGHPNX 101
           E+QKRRDWNTF QYL+NH+PPL L+RCSGAHV+EFL+YLDQFGKTKVH + C ++GHP X
Sbjct: 56  ENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPXX 115

Query: 102 XXXXXXXLKQAWGSLDALIGRLRAAYEENGGRPESNPFAARAVRIYLREVREAQAKARGI 161
           XXXXXXXL+QAWGSLDALIGRLRAA+EENGG+PE+NPF ARAVR+YLREVR+ Q+KARG+
Sbjct: 116 XXXXXXXLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRDMQSKARGV 175

Query: 162 PYE 165
            YE
Sbjct: 176 SYE 178

[Close]

BLAST of CsGy1G023650 vs. TAIR10
Match: AT5G28490.1 (Protein of unknown function (DUF640))

HSP 1 Score: 196.1 bits (497), Expect = 2.4e-50
Identity = 94/123 (76.42%), Postives = 107/123 (86.99%), Query Frame = 0


Query: 42  ESQKRRDWNTFLQYLKNHKPPLCLARCSGAHVIEFLKYLDQFGKTKVHASPCPYFGHPNX 101
           E+QKRRDWNTF QYL+NH+PPL L  CSGAHV+EFL+YLDQFGKTKVH   C +FG PN 
Sbjct: 27  ENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGKTKVHHQNCAFFGLPNP 86

Query: 102 XXXXXXXLKQAWGSLDALIGRLRAAYEENGGRPESNPFAARAVRIYLREVREAQAKARGI 161
             XXXXXL+QAWGSLDALIGRLRAAYEENGG PE+NPF +RAVR++LREVR+ QAKARG+
Sbjct: 87  PAXXXXXLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRLFLREVRDFQAKARGV 146

Query: 162 PYE 165
            YE
Sbjct: 147 SYE 149

[Close]

BLAST of CsGy1G023650 vs. Swiss-Prot
Match: sp|Q9LMK2|LSH6_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana OX=3702 GN=LSH6 PE=1 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.9e-58
Identity = 106/123 (86.18%), Postives = 110/123 (89.43%), Query Frame = 0


Query: 42  ESQKRRDWNTFLQYLKNHKPPLCLARCSGAHVIEFLKYLDQFGKTKVHASPCPYFGHPNX 101
           ESQKRRDWNTFLQYLKNHKPPL L+RCSGAHVIEFLKYLDQFGKTKVH + CPYFGH   
Sbjct: 33  ESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAACPYFGHQQP 92

Query: 102 XXXXXXXLKQAWGSLDALIGRLRAAYEENGGRPESNPFAARAVRIYLREVREAQAKARGI 161
                  LKQAWGSLDALIGRLRAAYEENGGRP+SNPFAARAVRIYLREVRE+QAKARGI
Sbjct: 93  PSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRESQAKARGI 152

Query: 162 PYE 165
           PYE
Sbjct: 153 PYE 155

[Close]

BLAST of CsGy1G023650 vs. Swiss-Prot
Match: sp|A2Y3I2|G1L9_ORYSI (Protein G1-like9 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_19565 PE=3 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.5e-57
Identity = 106/123 (86.18%), Postives = 109/123 (88.62%), Query Frame = 0


Query: 42  ESQKRRDWNTFLQYLKNHKPPLCLARCSGAHVIEFLKYLDQFGKTKVHASPCPYFGHPNX 101
           ESQKRRDWNTFLQYL+NHKPPL L RCSGAHVIEFLKYLDQFGKTKVHA  C YFG PN 
Sbjct: 69  ESQKRRDWNTFLQYLRNHKPPLTLPRCSGAHVIEFLKYLDQFGKTKVHADGCAYFGEPNP 128

Query: 102 XXXXXXXLKQAWGSLDALIGRLRAAYEENGGRPESNPFAARAVRIYLREVREAQAKARGI 161
                  L+QAWGSLDALIGRLRAAYEE+GGRPESNPFAARAVRIYLREVREAQAKARGI
Sbjct: 129 PAPCACPLRQAWGSLDALIGRLRAAYEESGGRPESNPFAARAVRIYLREVREAQAKARGI 188

Query: 162 PYE 165
           PYE
Sbjct: 189 PYE 191

[Close]

BLAST of CsGy1G023650 vs. Swiss-Prot
Match: sp|Q5W659|G1L9_ORYSJ (Protein G1-like9 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L9 PE=1 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.5e-57
Identity = 106/123 (86.18%), Postives = 109/123 (88.62%), Query Frame = 0


Query: 42  ESQKRRDWNTFLQYLKNHKPPLCLARCSGAHVIEFLKYLDQFGKTKVHASPCPYFGHPNX 101
           ESQKRRDWNTFLQYL+NHKPPL L RCSGAHVIEFLKYLDQFGKTKVHA  C YFG PN 
Sbjct: 69  ESQKRRDWNTFLQYLRNHKPPLTLPRCSGAHVIEFLKYLDQFGKTKVHADGCAYFGEPNP 128

Query: 102 XXXXXXXLKQAWGSLDALIGRLRAAYEENGGRPESNPFAARAVRIYLREVREAQAKARGI 161
                  L+QAWGSLDALIGRLRAAYEE+GGRPESNPFAARAVRIYLREVREAQAKARGI
Sbjct: 129 PAPCACPLRQAWGSLDALIGRLRAAYEESGGRPESNPFAARAVRIYLREVREAQAKARGI 188

Query: 162 PYE 165
           PYE
Sbjct: 189 PYE 191

[Close]

BLAST of CsGy1G023650 vs. Swiss-Prot
Match: sp|Q6ATW6|G1L8_ORYSJ (Protein G1-like8 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L8 PE=1 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.8e-55
Identity = 111/123 (90.24%), Postives = 117/123 (95.12%), Query Frame = 0


Query: 42  ESQKRRDWNTFLQYLKNHKPPLCLARCSGAHVIEFLKYLDQFGKTKVHASPCPYFGHPNX 101
           ESQKRRDWNTFLQYLKNH+PPL LARCSGAHVIEFLKYLDQFGKTKVHAS C Y+G P+X
Sbjct: 32  ESQKRRDWNTFLQYLKNHRPPLTLARCSGAHVIEFLKYLDQFGKTKVHASGCAYYGQPSX 91

Query: 102 XXXXXXXLKQAWGSLDALIGRLRAAYEENGGRPESNPFAARAVRIYLREVREAQAKARGI 161
           XXXXXXXL+QAWGSLDALIGRLRAAYEE+G  PESNPFAARAVRIYLREVR+AQAKARGI
Sbjct: 92  XXXXXXXLRQAWGSLDALIGRLRAAYEESGHAPESNPFAARAVRIYLREVRDAQAKARGI 151

Query: 162 PYE 165
           PYE
Sbjct: 152 PYE 154

[Close]

BLAST of CsGy1G023650 vs. Swiss-Prot
Match: sp|A2Y5N0|G1L8_ORYSI (Protein G1-like8 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_20303 PE=3 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 4.0e-55
Identity = 110/123 (89.43%), Postives = 117/123 (95.12%), Query Frame = 0


Query: 42  ESQKRRDWNTFLQYLKNHKPPLCLARCSGAHVIEFLKYLDQFGKTKVHASPCPYFGHPNX 101
           ESQKRRDWNTFLQYL+NH+PPL LARCSGAHVIEFLKYLDQFGKTKVHAS C Y+G P+X
Sbjct: 34  ESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEFLKYLDQFGKTKVHASGCAYYGQPSX 93

Query: 102 XXXXXXXLKQAWGSLDALIGRLRAAYEENGGRPESNPFAARAVRIYLREVREAQAKARGI 161
           XXXXXXXL+QAWGSLDALIGRLRAAYEE+G  PESNPFAARAVRIYLREVR+AQAKARGI
Sbjct: 94  XXXXXXXLRQAWGSLDALIGRLRAAYEESGHAPESNPFAARAVRIYLREVRDAQAKARGI 153

Query: 162 PYE 165
           PYE
Sbjct: 154 PYE 156

[Close]

BLAST of CsGy1G023650 vs. TrEMBL
Match: tr|A0A1S3C5Y5|A0A1S3C5Y5_CUCME (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like OS=Cucumis melo OX=3656 GN=LOC103497051 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.1e-61
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 42  ESQKRRDWNTFLQYLKNHKPPLCLARCSGAHVIEFLKYLDQFGKTKVHASPCPYFGHPNX 101
           ESQKRRDWNTFLQYLKNHKPPLCLARCSGAHVIEFLKYLDQFGKTKVHASPCPYFGHPNX
Sbjct: 41  ESQKRRDWNTFLQYLKNHKPPLCLARCSGAHVIEFLKYLDQFGKTKVHASPCPYFGHPNX 100

Query: 102 XXXXXXXLKQAWGSLDALIGRLRAAYEENGGRPESNPFAARAVRIYLREVREAQAKARGI 161
           XXXXXXXLKQAWGSLDALIGRLRAAYEENGGRPESNPFAARAVRIYLREVREAQAKARGI
Sbjct: 101 XXXXXXXLKQAWGSLDALIGRLRAAYEENGGRPESNPFAARAVRIYLREVREAQAKARGI 160

Query: 162 PYE 165
           PYE
Sbjct: 161 PYE 163

[Close]

BLAST of CsGy1G023650 vs. TrEMBL
Match: tr|M5W0Z1|M5W0Z1_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G051600 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 6.4e-58
Identity = 110/123 (89.43%), Postives = 111/123 (90.24%), Query Frame = 0


Query: 42  ESQKRRDWNTFLQYLKNHKPPLCLARCSGAHVIEFLKYLDQFGKTKVHASPCPYFGHPNX 101
           ESQKRRDWNTFLQYLKNHKPPL LARCSGAHVIEFLKYLDQFGKTKVHA+ CPYFGHPN 
Sbjct: 56  ESQKRRDWNTFLQYLKNHKPPLTLARCSGAHVIEFLKYLDQFGKTKVHAAGCPYFGHPNP 115

Query: 102 XXXXXXXLKQAWGSLDALIGRLRAAYEENGGRPESNPFAARAVRIYLREVREAQAKARGI 161
                  LKQAWGSLDALIGRLRAAYEENGGRPESNPF ARAVRIYLREVRE QAKARGI
Sbjct: 116 PAPCACPLKQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRIYLREVREGQAKARGI 175

Query: 162 PYE 165
           PYE
Sbjct: 176 PYE 178

[Close]

BLAST of CsGy1G023650 vs. TrEMBL
Match: tr|A0A0B0NCC8|A0A0B0NCC8_GOSAR (Error-prone DNA polymerase OS=Gossypium arboreum OX=29729 GN=F383_04581 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 8.3e-58
Identity = 110/123 (89.43%), Postives = 111/123 (90.24%), Query Frame = 0


Query: 42  ESQKRRDWNTFLQYLKNHKPPLCLARCSGAHVIEFLKYLDQFGKTKVHASPCPYFGHPNX 101
           ESQKRRDWNTFLQYLKNHKPPL LARCSGAHVIEFLKYLDQFGKTKVH + CPYFGHPN 
Sbjct: 54  ESQKRRDWNTFLQYLKNHKPPLTLARCSGAHVIEFLKYLDQFGKTKVHITGCPYFGHPNP 113

Query: 102 XXXXXXXLKQAWGSLDALIGRLRAAYEENGGRPESNPFAARAVRIYLREVREAQAKARGI 161
                  LKQAWGSLDALIGRLRAAYEENGGRPESNPFAARAVRIYLREVRE QAKARGI
Sbjct: 114 PAPCSCPLKQAWGSLDALIGRLRAAYEENGGRPESNPFAARAVRIYLREVREGQAKARGI 173

Query: 162 PYE 165
           PYE
Sbjct: 174 PYE 176

[Close]

BLAST of CsGy1G023650 vs. TrEMBL
Match: tr|A0A1U8PF47|A0A1U8PF47_GOSHI (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6-like OS=Gossypium hirsutum OX=3635 GN=LOC107958534 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 8.3e-58
Identity = 110/123 (89.43%), Postives = 111/123 (90.24%), Query Frame = 0


Query: 42  ESQKRRDWNTFLQYLKNHKPPLCLARCSGAHVIEFLKYLDQFGKTKVHASPCPYFGHPNX 101
           ESQKRRDWNTFLQYLKNHKPPL LARCSGAHVIEFLKYLDQFGKTKVH + CPYFGHPN 
Sbjct: 54  ESQKRRDWNTFLQYLKNHKPPLTLARCSGAHVIEFLKYLDQFGKTKVHITGCPYFGHPNP 113

Query: 102 XXXXXXXLKQAWGSLDALIGRLRAAYEENGGRPESNPFAARAVRIYLREVREAQAKARGI 161
                  LKQAWGSLDALIGRLRAAYEENGGRPESNPFAARAVRIYLREVRE QAKARGI
Sbjct: 114 PAPCSCPLKQAWGSLDALIGRLRAAYEENGGRPESNPFAARAVRIYLREVREGQAKARGI 173

Query: 162 PYE 165
           PYE
Sbjct: 174 PYE 176

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BLAST of CsGy1G023650 vs. TrEMBL
Match: tr|A0A1U8JJ74|A0A1U8JJ74_GOSHI (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6-like OS=Gossypium hirsutum OX=3635 GN=LOC107906287 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 8.3e-58
Identity = 110/123 (89.43%), Postives = 111/123 (90.24%), Query Frame = 0


Query: 42  ESQKRRDWNTFLQYLKNHKPPLCLARCSGAHVIEFLKYLDQFGKTKVHASPCPYFGHPNX 101
           ESQKRRDWNTFLQYLKNHKPPL LARCSGAHVIEFLKYLDQFGKTKVH + CPYFGHPN 
Sbjct: 54  ESQKRRDWNTFLQYLKNHKPPLTLARCSGAHVIEFLKYLDQFGKTKVHITGCPYFGHPNP 113

Query: 102 XXXXXXXLKQAWGSLDALIGRLRAAYEENGGRPESNPFAARAVRIYLREVREAQAKARGI 161
                  LKQAWGSLDALIGRLRAAYEENGGRPESNPFAARAVRIYLREVRE QAKARGI
Sbjct: 114 PAPCSCPLKQAWGSLDALIGRLRAAYEENGGRPESNPFAARAVRIYLREVREGQAKARGI 173

Query: 162 PYE 165
           PYE
Sbjct: 174 PYE 176

The following BLAST results are available for this feature:

BLAST of CsGy1G023650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457336.1	3.2e-61	100.00	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like [Cucumis melo]	[more]
XP_022998564.1	1.5e-58	97.56	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like [Cucurbita maxima]	[more]
XP_008237657.2	7.4e-58	89.43	PREDICTED: LOW QUALITY PROTEIN: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 [Prun...	[more]
XP_022970622.1	7.4e-58	95.93	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like [Cucurbita maxima]	[more]
XP_007205822.1	9.6e-58	89.43	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 [Prunus persica] >ONH99813.1 hypothet...	[more]

BLAST of CsGy1G023650 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G07090.1	1.6e-59	86.18	Protein of unknown function (DUF640)	[more]
AT5G58500.1	9.3e-55	79.84	Protein of unknown function (DUF640)	[more]
AT3G23290.2	4.6e-54	76.42	Protein of unknown function (DUF640)	[more]
AT2G31160.1	9.6e-52	78.86	Protein of unknown function (DUF640)	[more]
AT5G28490.1	2.4e-50	76.42	Protein of unknown function (DUF640)	[more]

BLAST of CsGy1G023650 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LMK2\|LSH6_ARATH	2.9e-58	86.18	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
sp\|A2Y3I2\|G1L9_ORYSI	2.5e-57	86.18	Protein G1-like9 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_19565 PE=3 SV=1	[more]
sp\|Q5W659\|G1L9_ORYSJ	2.5e-57	86.18	Protein G1-like9 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L9 PE=1 SV=1	[more]
sp\|Q6ATW6\|G1L8_ORYSJ	1.8e-55	90.24	Protein G1-like8 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L8 PE=1 SV=1	[more]
sp\|A2Y5N0\|G1L8_ORYSI	4.0e-55	89.43	Protein G1-like8 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_20303 PE=3 SV=1	[more]

BLAST of CsGy1G023650 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C5Y5\|A0A1S3C5Y5_CUCME	2.1e-61	100.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|M5W0Z1\|M5W0Z1_PRUPE	6.4e-58	89.43	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G051600 PE=4 SV=1	[more]
tr\|A0A0B0NCC8\|A0A0B0NCC8_GOSAR	8.3e-58	89.43	Error-prone DNA polymerase OS=Gossypium arboreum OX=29729 GN=F383_04581 PE=4 SV=...	[more]
tr\|A0A1U8PF47\|A0A1U8PF47_GOSHI	8.3e-58	89.43	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6-like OS=Gossypium hirsutum OX=3635 GN...	[more]
tr\|A0A1U8JJ74\|A0A1U8JJ74_GOSHI	8.3e-58	89.43	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6-like OS=Gossypium hirsutum OX=3635 GN...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006936	ALOG_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G023650.1	CsGy1G023650.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 38..153 e-value: 3.3E-65 score: 217.9
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 40..167 score: 83.465
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 179..195
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 158..222
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 158..173
None	No IPR available	PANTHER	PTHR31165:SF6	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-RELATED	coord: 10..217
None	No IPR available	PANTHER	PTHR31165	FAMILY NOT NAMED	coord: 10..217

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G023650	Cla008138	Watermelon (97103) v1	cgybwmB023
CsGy1G023650	Csa1G533430	Cucumber (Chinese Long) v2	cgybcuB002
CsGy1G023650	MELO3C020521	Melon (DHL92) v3.5.1	cgybmeB023
CsGy1G023650	ClCG03G000450	Watermelon (Charleston Gray)	cgybwcgB044
CsGy1G023650	CSPI01G24170	Wild cucumber (PI 183967)	cgybcpiB002
CsGy1G023650	CmaCh13G000460	Cucurbita maxima (Rimu)	cgybcmaB075
CsGy1G023650	CmaCh01G006950	Cucurbita maxima (Rimu)	cgybcmaB104
CsGy1G023650	CmoCh01G007220	Cucurbita moschata (Rifu)	cgybcmoB098
CsGy1G023650	CmoCh13G000360	Cucurbita moschata (Rifu)	cgybcmoB069
CsGy1G023650	Lsi02G012530	Bottle gourd (USVL1VR-Ls)	cgyblsiB027
CsGy1G023650	Cp4.1LG02g11880	Cucurbita pepo (Zucchini)	cgybcpeB091
CsGy1G023650	Cp4.1LG20g07910	Cucurbita pepo (Zucchini)	cgybcpeB071
CsGy1G023650	MELO3C020521.2	Melon (DHL92) v3.6.1	cgybmedB021
CsGy1G023650	CsaV3_1G036470	Cucumber (Chinese Long) v3	cgybcucB001
CsGy1G023650	Bhi08G000393	Wax gourd	cgybwgoB045
CsGy1G023650	Carg07047	Silver-seed gourd	carcgybB0525
CsGy1G023650	Carg26036	Silver-seed gourd	carcgybB0614

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G023650	Silver-seed gourd	carcgybB0655
CsGy1G023650	Watermelon (97103) v2	cgybwmbB042
CsGy1G023650	Cucurbita maxima (Rimu)	cgybcmaB133
CsGy1G023650	Cucurbita moschata (Rifu)	cgybcmoB124
CsGy1G023650	Cucurbita moschata (Rifu)	cgybcmoB125
CsGy1G023650	Cucurbita pepo (Zucchini)	cgybcpeB065
CsGy1G023650	Watermelon (Charleston Gray)	cgybwcgB055
CsGy1G023650	Watermelon (97103) v1	cgybwmB066