CmaCh13G000460 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh13G000460
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6
Location	Cma_Chr13 : 439902 .. 440543 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCGGTGTCTAAACCTGGTGGTGGGCCGTCGGAGAGATCATCCGCCGGAGCGTCGGCTGCTGCGACAACTCCAGCTCCGGCGAGCCGGTATGAATCTCAGAAGAGAAGGGATTGGAACACGTTCTTGCAGTATTTGAAGAACCACAAGCCGCCACTGTCTTTAGCGCGTTGCAGTGGCGCTCACGTCATTGAATTCTTGAAGTATTTGGACCAGTTCGGGAAGACTAAGGTCCATTCCTCGGGCTGCCCCTATTTCGGCCACCCGAACCCACCTGCCCCTTGCCCCTGCCCGCTCAAGCAGGCCTGGGGCAGCCTCGACGCCTTGATCGGCCGCCTCAGAGCCGCCTACGAGGAGAACGGCGGCCGCCCTGAATCAAACCCATTTGCCGCACGCGCCGTCAGGATTTTTCTCCGTGAGGTTCGGGAATCTCAGGCCAAAGCCAGAGGGATTCCCTACGAGAAAAAAAAGCGGAAACGACACGCCGCCTTTGCCTCCGCCGCCGCTCCCGCCGCCGCTATTCTGTCTGTGCCTCCAGAGACCCATGTTGTTTTGGCCAGTGTCGATCATCAGCCGGAAACATCTGATCCGAGTGGTGCTCCTCCGCCGTCGACAACCGCCGCTTCCACCGCCGTATAG

mRNA sequence

ATGGATCCGGTGTCTAAACCTGGTGGTGGGCCGTCGGAGAGATCATCCGCCGGAGCGTCGGCTGCTGCGACAACTCCAGCTCCGGCGAGCCGGTATGAATCTCAGAAGAGAAGGGATTGGAACACGTTCTTGCAGTATTTGAAGAACCACAAGCCGCCACTGTCTTTAGCGCGTTGCAGTGGCGCTCACGTCATTGAATTCTTGAAGTATTTGGACCAGTTCGGGAAGACTAAGGTCCATTCCTCGGGCTGCCCCTATTTCGGCCACCCGAACCCACCTGCCCCTTGCCCCTGCCCGCTCAAGCAGGCCTGGGGCAGCCTCGACGCCTTGATCGGCCGCCTCAGAGCCGCCTACGAGGAGAACGGCGGCCGCCCTGAATCAAACCCATTTGCCGCACGCGCCGTCAGGATTTTTCTCCGTGAGGTTCGGGAATCTCAGGCCAAAGCCAGAGGGATTCCCTACGAGAAAAAAAAGCGGAAACGACACGCCGCCTTTGCCTCCGCCGCCGCTCCCGCCGCCGCTATTCTGTCTGTGCCTCCAGAGACCCATGTTGTTTTGGCCAGTGTCGATCATCAGCCGGAAACATCTGATCCGAGTGGTGCTCCTCCGCCGTCGACAACCGCCGCTTCCACCGCCGTATAG

Coding sequence (CDS)

ATGGATCCGGTGTCTAAACCTGGTGGTGGGCCGTCGGAGAGATCATCCGCCGGAGCGTCGGCTGCTGCGACAACTCCAGCTCCGGCGAGCCGGTATGAATCTCAGAAGAGAAGGGATTGGAACACGTTCTTGCAGTATTTGAAGAACCACAAGCCGCCACTGTCTTTAGCGCGTTGCAGTGGCGCTCACGTCATTGAATTCTTGAAGTATTTGGACCAGTTCGGGAAGACTAAGGTCCATTCCTCGGGCTGCCCCTATTTCGGCCACCCGAACCCACCTGCCCCTTGCCCCTGCCCGCTCAAGCAGGCCTGGGGCAGCCTCGACGCCTTGATCGGCCGCCTCAGAGCCGCCTACGAGGAGAACGGCGGCCGCCCTGAATCAAACCCATTTGCCGCACGCGCCGTCAGGATTTTTCTCCGTGAGGTTCGGGAATCTCAGGCCAAAGCCAGAGGGATTCCCTACGAGAAAAAAAAGCGGAAACGACACGCCGCCTTTGCCTCCGCCGCCGCTCCCGCCGCCGCTATTCTGTCTGTGCCTCCAGAGACCCATGTTGTTTTGGCCAGTGTCGATCATCAGCCGGAAACATCTGATCCGAGTGGTGCTCCTCCGCCGTCGACAACCGCCGCTTCCACCGCCGTATAG

Protein sequence

MDPVSKPGGGPSERSSAGASAAATTPAPASRYESQKRRDWNTFLQYLKNHKPPLSLARCSGAHVIEFLKYLDQFGKTKVHSSGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAYEENGGRPESNPFAARAVRIFLREVRESQAKARGIPYEKKKRKRHAAFASAAAPAAAILSVPPETHVVLASVDHQPETSDPSGAPPPSTTAASTAV

Homology

[Close]

BLAST of CmaCh13G000460 vs. Swiss-Prot
Match: G1L7_ORYSJ (Protein G1-like7 OS=Oryza sativa subsp. japonica GN=G1L7 PE=1 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 9.2e-70
Identity = 136/186 (73.12%), Postives = 152/186 (81.72%), Query Frame = 1


Query: 1   MDPVSKPGGGPSERSSAGASAAATTPAPA---SRYESQKRRDWNTFLQYLKNHKPPLSLA 60
           MDP    G GPS  ++ GA A A  P P    SRYESQKRRDWNTFLQYL+NH+PPL+LA
Sbjct: 1   MDP---SGPGPSSAAAGGAPAVAAAPQPPAQLSRYESQKRRDWNTFLQYLRNHRPPLTLA 60

Query: 61  RCSGAHVIEFLKYLDQFGKTKVHSSGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAA 120
           RCSGAHVIEFL+YLDQFGKTKVH+SGC ++G P+PP PCPCPL+QAWGSLDALIGRLRAA
Sbjct: 61  RCSGAHVIEFLRYLDQFGKTKVHASGCAFYGQPSPPGPCPCPLRQAWGSLDALIGRLRAA 120

Query: 121 YEENGGRPESNPFAARAVRIFLREVRESQAKARGIPYEKKKRKRHAAF---------ASA 175
           YEE+GG PESNPFAARAVRI+LREVR+SQAKARGIPYEKKKRKR  A          +S+
Sbjct: 121 YEESGGTPESNPFAARAVRIYLREVRDSQAKARGIPYEKKKRKRSQAAQPAGVEPSGSSS 180

[Close]

BLAST of CmaCh13G000460 vs. Swiss-Prot
Match: G1L7_ORYSI (Protein G1-like7 OS=Oryza sativa subsp. indica GN=OsI_10694 PE=3 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 9.2e-70
Identity = 136/186 (73.12%), Postives = 152/186 (81.72%), Query Frame = 1


Query: 1   MDPVSKPGGGPSERSSAGASAAATTPAPA---SRYESQKRRDWNTFLQYLKNHKPPLSLA 60
           MDP    G GPS  ++ GA A A  P P    SRYESQKRRDWNTFLQYL+NH+PPL+LA
Sbjct: 1   MDP---SGPGPSSAAAGGAPAVAAAPQPPAQLSRYESQKRRDWNTFLQYLRNHRPPLTLA 60

Query: 61  RCSGAHVIEFLKYLDQFGKTKVHSSGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAA 120
           RCSGAHVIEFL+YLDQFGKTKVH+SGC ++G P+PP PCPCPL+QAWGSLDALIGRLRAA
Sbjct: 61  RCSGAHVIEFLRYLDQFGKTKVHASGCAFYGQPSPPGPCPCPLRQAWGSLDALIGRLRAA 120

Query: 121 YEENGGRPESNPFAARAVRIFLREVRESQAKARGIPYEKKKRKRHAAF---------ASA 175
           YEE+GG PESNPFAARAVRI+LREVR+SQAKARGIPYEKKKRKR  A          +S+
Sbjct: 121 YEESGGTPESNPFAARAVRIYLREVRDSQAKARGIPYEKKKRKRSQAAQPAGVEPSGSSS 180

[Close]

BLAST of CmaCh13G000460 vs. Swiss-Prot
Match: LSH6_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana GN=LSH6 PE=1 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 2.1e-69
Identity = 127/161 (78.88%), Postives = 137/161 (85.09%), Query Frame = 1


Query: 1   MDPVSKPGGGPSERSSAGASAAATTPAPASRYESQKRRDWNTFLQYLKNHKPPLSLARCS 60
           M+        P +    G S  ++ PA  SRYESQKRRDWNTFLQYLKNHKPPL+L+RCS
Sbjct: 1   MESADSGRSDPVKGDDPGPSFVSSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCS 60

Query: 61  GAHVIEFLKYLDQFGKTKVHSSGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAYEE 120
           GAHVIEFLKYLDQFGKTKVH + CPYFGH  PP+PC CPLKQAWGSLDALIGRLRAAYEE
Sbjct: 61  GAHVIEFLKYLDQFGKTKVHVAACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEE 120

Query: 121 NGGRPESNPFAARAVRIFLREVRESQAKARGIPYEKKKRKR 162
           NGGRP+SNPFAARAVRI+LREVRESQAKARGIPYEKKKRKR
Sbjct: 121 NGGRPDSNPFAARAVRIYLREVRESQAKARGIPYEKKKRKR 161

[Close]

BLAST of CmaCh13G000460 vs. Swiss-Prot
Match: G1L9_ORYSI (Protein G1-like9 OS=Oryza sativa subsp. indica GN=OsI_19565 PE=3 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 1.3e-68
Identity = 134/178 (75.28%), Postives = 148/178 (83.15%), Query Frame = 1


Query: 23  ATTPAPASRYESQKRRDWNTFLQYLKNHKPPLSLARCSGAHVIEFLKYLDQFGKTKVHSS 82
           A   A  SRYESQKRRDWNTFLQYL+NHKPPL+L RCSGAHVIEFLKYLDQFGKTKVH+ 
Sbjct: 59  APAAAGLSRYESQKRRDWNTFLQYLRNHKPPLTLPRCSGAHVIEFLKYLDQFGKTKVHAD 118

Query: 83  GCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAYEENGGRPESNPFAARAVRIFLREV 142
           GC YFG PNPPAPC CPL+QAWGSLDALIGRLRAAYEE+GGRPESNPFAARAVRI+LREV
Sbjct: 119 GCAYFGEPNPPAPCACPLRQAWGSLDALIGRLRAAYEESGGRPESNPFAARAVRIYLREV 178

Query: 143 RESQAKARGIPYEKKKRKRHAAFASAAAPAAAILSVPPETHVVLASVDHQPETSDPSG 201
           RE+QAKARGIPYE KKRKR AA A+AA P   +++ PP    V+ + D    TS  +G
Sbjct: 179 REAQAKARGIPYE-KKRKRGAAAAAAAPP--VVVAPPP----VVTAPDDATGTSGGAG 229

[Close]

BLAST of CmaCh13G000460 vs. Swiss-Prot
Match: G1L9_ORYSJ (Protein G1-like9 OS=Oryza sativa subsp. japonica GN=G1L9 PE=1 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 1.3e-68
Identity = 134/178 (75.28%), Postives = 148/178 (83.15%), Query Frame = 1


Query: 23  ATTPAPASRYESQKRRDWNTFLQYLKNHKPPLSLARCSGAHVIEFLKYLDQFGKTKVHSS 82
           A   A  SRYESQKRRDWNTFLQYL+NHKPPL+L RCSGAHVIEFLKYLDQFGKTKVH+ 
Sbjct: 59  APAAAGLSRYESQKRRDWNTFLQYLRNHKPPLTLPRCSGAHVIEFLKYLDQFGKTKVHAD 118

Query: 83  GCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAYEENGGRPESNPFAARAVRIFLREV 142
           GC YFG PNPPAPC CPL+QAWGSLDALIGRLRAAYEE+GGRPESNPFAARAVRI+LREV
Sbjct: 119 GCAYFGEPNPPAPCACPLRQAWGSLDALIGRLRAAYEESGGRPESNPFAARAVRIYLREV 178

Query: 143 RESQAKARGIPYEKKKRKRHAAFASAAAPAAAILSVPPETHVVLASVDHQPETSDPSG 201
           RE+QAKARGIPYE KKRKR AA A+AA P   +++ PP    V+ + D    TS  +G
Sbjct: 179 REAQAKARGIPYE-KKRKRGAAAAAAAPP--VVVAPPP----VVTAPDDATGTSGGAG 229

[Close]

BLAST of CmaCh13G000460 vs. TrEMBL
Match: A5APB4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019556 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 3.6e-73
Identity = 147/184 (79.89%), Postives = 153/184 (83.15%), Query Frame = 1


Query: 2   DPVSKPGGGPSERSSAGASAAATTPAPASRYESQKRRDWNTFLQYLKNHKPPLSLARCSG 61
           DP S  G GPS     GA A  ++PAP SRYESQKRRDWNTFLQYLKNHKPPL+LARCSG
Sbjct: 11  DPSS--GEGPSAGGGGGA-AEGSSPAPPSRYESQKRRDWNTFLQYLKNHKPPLTLARCSG 70

Query: 62  AHVIEFLKYLDQFGKTKVHSSGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAYEEN 121
           AHVIEFLKYLDQFGKTKVH SGCPYFGHPNPPAPC CPLKQAWGSLDALIGRLRAAYEEN
Sbjct: 71  AHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCACPLKQAWGSLDALIGRLRAAYEEN 130

Query: 122 GGRPESNPFAARAVRIFLREVRESQAKARGIPYEKKKRKRHAAFASAAAPAAAILSVPPE 181
           GGRPESNPF ARAVRI+LREVRE QAKARGIPYEKKKRKR    A+A   AA  +S P  
Sbjct: 131 GGRPESNPFGARAVRIYLREVREGQAKARGIPYEKKKRKRPTVTATAVV-AATNVSAPAV 190

Query: 182 THVV 186
           T  V
Sbjct: 191 TQGV 190

[Close]

BLAST of CmaCh13G000460 vs. TrEMBL
Match: F6GUL9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g07090 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 4.8e-73
Identity = 144/178 (80.90%), Postives = 150/178 (84.27%), Query Frame = 1


Query: 8   GGGPSERSSAGASAAATTPAPASRYESQKRRDWNTFLQYLKNHKPPLSLARCSGAHVIEF 67
           G GPS     GA A  ++PAP SRYESQKRRDWNTFLQYLKNHKPPL+LARCSGAHVIEF
Sbjct: 15  GEGPSAGGGGGA-AEGSSPAPPSRYESQKRRDWNTFLQYLKNHKPPLTLARCSGAHVIEF 74

Query: 68  LKYLDQFGKTKVHSSGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAYEENGGRPES 127
           LKYLDQFGKTKVH SGCPYFGHPNPPAPC CPLKQAWGSLDALIGRLRAAYEENGGRPES
Sbjct: 75  LKYLDQFGKTKVHISGCPYFGHPNPPAPCACPLKQAWGSLDALIGRLRAAYEENGGRPES 134

Query: 128 NPFAARAVRIFLREVRESQAKARGIPYEKKKRKRHAAFASAAAPAAAILSVPPETHVV 186
           NPF ARAVRI+LREVRE QAKARGIPYEKKKRKR    A+A   AA  +S P  T  V
Sbjct: 135 NPFGARAVRIYLREVREGQAKARGIPYEKKKRKRPTVTATAVV-AATNVSAPAVTQGV 190

[Close]

BLAST of CmaCh13G000460 vs. TrEMBL
Match: A0A068ULC9_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00028476001 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 1.1e-72
Identity = 142/172 (82.56%), Postives = 149/172 (86.63%), Query Frame = 1


Query: 8   GGGPSERSSAGASAAA-----TTPAPASRYESQKRRDWNTFLQYLKNHKPPLSLARCSGA 67
           GGG +  SSA  S +A     +T AP SRYESQKRRDWNTFLQYL+NHKPPL+LARCSGA
Sbjct: 12  GGGEAGPSSASGSGSAEGVGGSTAAPPSRYESQKRRDWNTFLQYLRNHKPPLTLARCSGA 71

Query: 68  HVIEFLKYLDQFGKTKVHSSGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAYEENG 127
           HVIEFLKYLDQFGKTKVH +GCPYFGHPNPPAPC CPLKQAWGSLDALIGRLRAAYEENG
Sbjct: 72  HVIEFLKYLDQFGKTKVHVAGCPYFGHPNPPAPCQCPLKQAWGSLDALIGRLRAAYEENG 131

Query: 128 GRPESNPFAARAVRIFLREVRESQAKARGIPYEKKKRKRHAAFASAAAPAAA 175
           GRPESNPF ARAVRI+LREVRESQAKARGIPYEKKKRKR AA A  A   AA
Sbjct: 132 GRPESNPFGARAVRIYLREVRESQAKARGIPYEKKKRKRPAATAVPAVSVAA 183

[Close]

BLAST of CmaCh13G000460 vs. TrEMBL
Match: M5W0Z1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010883mg PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.8e-72
Identity = 139/180 (77.22%), Postives = 151/180 (83.89%), Query Frame = 1


Query: 2   DPVSKPGGGPSERSS-------------AGASAAATTPAPASRYESQKRRDWNTFLQYLK 61
           DP +  G GPS  ++             A A+ A+++PAP SRYESQKRRDWNTFLQYLK
Sbjct: 12  DPNTSGGEGPSSAATGSIAAAAGGAVVPAAAAEASSSPAPPSRYESQKRRDWNTFLQYLK 71

Query: 62  NHKPPLSLARCSGAHVIEFLKYLDQFGKTKVHSSGCPYFGHPNPPAPCPCPLKQAWGSLD 121
           NHKPPL+LARCSGAHVIEFLKYLDQFGKTKVH++GCPYFGHPNPPAPC CPLKQAWGSLD
Sbjct: 72  NHKPPLTLARCSGAHVIEFLKYLDQFGKTKVHAAGCPYFGHPNPPAPCACPLKQAWGSLD 131

Query: 122 ALIGRLRAAYEENGGRPESNPFAARAVRIFLREVRESQAKARGIPYEKKKRKRHAAFASA 169
           ALIGRLRAAYEENGGRPESNPF ARAVRI+LREVRE QAKARGIPYEKKKRKR    A+A
Sbjct: 132 ALIGRLRAAYEENGGRPESNPFGARAVRIYLREVREGQAKARGIPYEKKKRKRPTVTATA 191

[Close]

BLAST of CmaCh13G000460 vs. TrEMBL
Match: A0A0B0NCC8_GOSAR (Error-prone DNA polymerase OS=Gossypium arboreum GN=F383_04581 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 3.1e-72
Identity = 133/158 (84.18%), Postives = 142/158 (89.87%), Query Frame = 1


Query: 11  PSERSSAGASAAATTPAPASRYESQKRRDWNTFLQYLKNHKPPLSLARCSGAHVIEFLKY 70
           P+     GA  ++++PAP SRYESQKRRDWNTFLQYLKNHKPPL+LARCSGAHVIEFLKY
Sbjct: 32  PTVSQQGGAGESSSSPAPPSRYESQKRRDWNTFLQYLKNHKPPLTLARCSGAHVIEFLKY 91

Query: 71  LDQFGKTKVHSSGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAYEENGGRPESNPF 130
           LDQFGKTKVH +GCPYFGHPNPPAPC CPLKQAWGSLDALIGRLRAAYEENGGRPESNPF
Sbjct: 92  LDQFGKTKVHITGCPYFGHPNPPAPCSCPLKQAWGSLDALIGRLRAAYEENGGRPESNPF 151

Query: 131 AARAVRIFLREVRESQAKARGIPYEKKKRKRHAAFASA 169
           AARAVRI+LREVRE QAKARGIPYEKKKRKR     +A
Sbjct: 152 AARAVRIYLREVREGQAKARGIPYEKKKRKRSTVNTTA 189

[Close]

BLAST of CmaCh13G000460 vs. TAIR10
Match: AT1G07090.1 (AT1G07090.1 Protein of unknown function (DUF640))

HSP 1 Score: 263.5 bits (672), Expect = 1.2e-70
Identity = 127/161 (78.88%), Postives = 137/161 (85.09%), Query Frame = 1


Query: 1   MDPVSKPGGGPSERSSAGASAAATTPAPASRYESQKRRDWNTFLQYLKNHKPPLSLARCS 60
           M+        P +    G S  ++ PA  SRYESQKRRDWNTFLQYLKNHKPPL+L+RCS
Sbjct: 1   MESADSGRSDPVKGDDPGPSFVSSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCS 60

Query: 61  GAHVIEFLKYLDQFGKTKVHSSGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAYEE 120
           GAHVIEFLKYLDQFGKTKVH + CPYFGH  PP+PC CPLKQAWGSLDALIGRLRAAYEE
Sbjct: 61  GAHVIEFLKYLDQFGKTKVHVAACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEE 120

Query: 121 NGGRPESNPFAARAVRIFLREVRESQAKARGIPYEKKKRKR 162
           NGGRP+SNPFAARAVRI+LREVRESQAKARGIPYEKKKRKR
Sbjct: 121 NGGRPDSNPFAARAVRIYLREVRESQAKARGIPYEKKKRKR 161

[Close]

BLAST of CmaCh13G000460 vs. TAIR10
Match: AT5G58500.1 (AT5G58500.1 Protein of unknown function (DUF640))

HSP 1 Score: 246.5 bits (628), Expect = 1.5e-65
Identity = 115/144 (79.86%), Postives = 133/144 (92.36%), Query Frame = 1


Query: 19  ASAAATTPAPASRYESQKRRDWNTFLQYLKNHKPPLSLARCSGAHVIEFLKYLDQFGKTK 78
           A AAA++ +  SRYESQKRRDWNTFLQYL+NHKPPL+L+RCSGAHV+EFLKYLDQFGKTK
Sbjct: 7   AKAAASSSSSPSRYESQKRRDWNTFLQYLRNHKPPLNLSRCSGAHVLEFLKYLDQFGKTK 66

Query: 79  VHSSGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAYEE-NGGRPESNPFAARAVRI 138
           VH++ CP+FG PNPP+ C CPLKQAWGSLDALIGRLRAA+EE  GG PESNPFAA+AVRI
Sbjct: 67  VHATACPFFGQPNPPSQCTCPLKQAWGSLDALIGRLRAAFEEIGGGLPESNPFAAKAVRI 126

Query: 139 FLREVRESQAKARGIPYEKKKRKR 162
           +L+EVR++QAKARGIPY+KKKRKR
Sbjct: 127 YLKEVRQTQAKARGIPYDKKKRKR 150

[Close]

BLAST of CmaCh13G000460 vs. TAIR10
Match: AT3G23290.2 (AT3G23290.2 Protein of unknown function (DUF640))

HSP 1 Score: 245.7 bits (626), Expect = 2.5e-65
Identity = 117/158 (74.05%), Postives = 135/158 (85.44%), Query Frame = 1


Query: 15  SSAGASAAATTPAPASRYESQKRRDWNTFLQYLKNHKPPLSLARCSGAHVIEFLKYLDQF 74
           SS+ +S+  +     SRYE+QKRRDWNTF QYL+NH+PPLSL+RCSGAHV+EFL+YLDQF
Sbjct: 32  SSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQF 91

Query: 75  GKTKVHSSGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAYEENGGRPESNPFAARA 134
           GKTKVH+  CP+FGHPNPPAPC CPL+QAWGSLDALIGRLRAA+EENGG PE+NPF ARA
Sbjct: 92  GKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARA 151

Query: 135 VRIFLREVRESQAKARGIPYEKKKRKRHAAFASAAAPA 173
           VR++LREVR+SQAKARGI YEKKKRKR       A PA
Sbjct: 152 VRLYLREVRDSQAKARGISYEKKKRKRPPPPLPPAQPA 189

[Close]

BLAST of CmaCh13G000460 vs. TAIR10
Match: AT2G31160.1 (AT2G31160.1 Protein of unknown function (DUF640))

HSP 1 Score: 241.9 bits (616), Expect = 3.6e-64
Identity = 112/165 (67.88%), Postives = 142/165 (86.06%), Query Frame = 1


Query: 9   GGPSERSSAGASAAATTPAPASRYESQKRRDWNTFLQYLKNHKPPLSLARCSGAHVIEFL 68
           G     ++   S++++  A +SRYE+QKRRDWNTF QYL+NH+PPLSL+RCSGAHV+EFL
Sbjct: 32  GATGGEATQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFL 91

Query: 69  KYLDQFGKTKVHSSGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAYEENGGRPESN 128
           +YLDQFGKTKVH++ C ++GHPNPPAPCPCPL+QAWGSLDALIGRLRAA+EENGG+PE+N
Sbjct: 92  RYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETN 151

Query: 129 PFAARAVRIFLREVRESQAKARGIPYEKKKRKRHAAFASAAAPAA 174
           PF ARAVR++LREVR+ Q+KARG+ YEKKKRKR    +S ++ +A
Sbjct: 152 PFGARAVRLYLREVRDMQSKARGVSYEKKKRKRPLPSSSTSSSSA 196

[Close]

BLAST of CmaCh13G000460 vs. TAIR10
Match: AT5G28490.1 (AT5G28490.1 Protein of unknown function (DUF640))

HSP 1 Score: 238.4 bits (607), Expect = 4.0e-63
Identity = 107/141 (75.89%), Postives = 124/141 (87.94%), Query Frame = 1


Query: 20  SAAATTPAPASRYESQKRRDWNTFLQYLKNHKPPLSLARCSGAHVIEFLKYLDQFGKTKV 79
           S+   TP  +SRYE+QKRRDWNTF QYL+NH+PPLSL  CSGAHV+EFL+YLDQFGKTKV
Sbjct: 14  SSTQLTPPSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGKTKV 73

Query: 80  HSSGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAYEENGGRPESNPFAARAVRIFL 139
           H   C +FG PNPPAPCPCPL+QAWGSLDALIGRLRAAYEENGG PE+NPF +RAVR+FL
Sbjct: 74  HHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRLFL 133

Query: 140 REVRESQAKARGIPYEKKKRK 161
           REVR+ QAKARG+ YEKK+++
Sbjct: 134 REVRDFQAKARGVSYEKKRKR 154

[Close]

BLAST of CmaCh13G000460 vs. NCBI nr
Match: gi|659114999|ref|XP_008457336.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like isoform X2 [Cucumis melo])

HSP 1 Score: 303.1 bits (775), Expect = 3.7e-79
Identity = 166/227 (73.13%), Postives = 176/227 (77.53%), Query Frame = 1


Query: 1   MDPVSKPGGG-PSERSSAGAS-------AAATTPAPASRYESQKRRDWNTFLQYLKNHKP 60
           MD VS+ GGG  SE +  G S       AAA   AP SRYESQKRRDWNTFLQYLKNHKP
Sbjct: 1   MDSVSESGGGGASESTGEGCSSATGTGTAAAAGVAPPSRYESQKRRDWNTFLQYLKNHKP 60

Query: 61  PLSLARCSGAHVIEFLKYLDQFGKTKVHSSGCPYFGHPNPPAPCPCPLKQAWGSLDALIG 120
           PL LARCSGAHVIEFLKYLDQFGKTKVH+S CPYFGHPNPPAPCPCPLKQAWGSLDALIG
Sbjct: 61  PLCLARCSGAHVIEFLKYLDQFGKTKVHASPCPYFGHPNPPAPCPCPLKQAWGSLDALIG 120

Query: 121 RLRAAYEENGGRPESNPFAARAVRIFLREVRESQAKARGIPYEKKKRKRHAAFASAAAPA 180
           RLRAAYEENGGRPESNPFAARAVRI+LREVRE+QAKARGIPYEKKKRKR        AP 
Sbjct: 121 RLRAAYEENGGRPESNPFAARAVRIYLREVREAQAKARGIPYEKKKRKR-------PAPT 180

Query: 181 AAILSVPPETHVVLASVDHQPETS------DPSGAPPPSTTAASTAV 214
           A        T     + D+QPET+      DP+ APPPSTTAAST+V
Sbjct: 181 APPPETSTSTTATTTTGDNQPETTAGGGGDDPAVAPPPSTTAASTSV 220

[Close]

BLAST of CmaCh13G000460 vs. NCBI nr
Match: gi|659114997|ref|XP_008457335.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like isoform X1 [Cucumis melo])

HSP 1 Score: 301.2 bits (770), Expect = 1.4e-78
Identity = 165/226 (73.01%), Postives = 175/226 (77.43%), Query Frame = 1


Query: 1   MDPVSKPGGG-PSERSSAGAS-------AAATTPAPASRYESQKRRDWNTFLQYLKNHKP 60
           MD VS+ GGG  SE +  G S       AAA   AP SRYESQKRRDWNTFLQYLKNHKP
Sbjct: 1   MDSVSESGGGGASESTGEGCSSATGTGTAAAAGVAPPSRYESQKRRDWNTFLQYLKNHKP 60

Query: 61  PLSLARCSGAHVIEFLKYLDQFGKTKVHSSGCPYFGHPNPPAPCPCPLKQAWGSLDALIG 120
           PL LARCSGAHVIEFLKYLDQFGKTKVH+S CPYFGHPNPPAPCPCPLKQAWGSLDALIG
Sbjct: 61  PLCLARCSGAHVIEFLKYLDQFGKTKVHASPCPYFGHPNPPAPCPCPLKQAWGSLDALIG 120

Query: 121 RLRAAYEENGGRPESNPFAARAVRIFLREVRESQAKARGIPYEKKKRKRHAAFASAAAPA 180
           RLRAAYEENGGRPESNPFAARAVRI+LREVRE+QAKARGIPYEKKKRKR        AP 
Sbjct: 121 RLRAAYEENGGRPESNPFAARAVRIYLREVREAQAKARGIPYEKKKRKR-------PAPT 180

Query: 181 AAILSVPPETHVVLASVDHQPETS------DPSGAPPPSTTAASTA 213
           A        T     + D+QPET+      DP+ APPPSTTAAST+
Sbjct: 181 APPPETSTSTTATTTTGDNQPETTAGGGGDDPAVAPPPSTTAASTS 219

[Close]

BLAST of CmaCh13G000460 vs. NCBI nr
Match: gi|778665225|ref|XP_011648517.1| (PREDICTED: protein G1-like3 [Cucumis sativus])

HSP 1 Score: 284.3 bits (726), Expect = 1.8e-73
Identity = 150/201 (74.63%), Postives = 161/201 (80.10%), Query Frame = 1


Query: 1   MDPVSKPGGG--PSERSSAGASAAATTP---APASRYESQKRRDWNTFLQYLKNHKPPLS 60
           MD VS+ GGG   SE ++ G S+A       AP SRYESQKRRDWNTFLQYLKNHKPPL 
Sbjct: 1   MDSVSESGGGGGASESTAEGCSSATGGGGGGAPPSRYESQKRRDWNTFLQYLKNHKPPLC 60

Query: 61  LARCSGAHVIEFLKYLDQFGKTKVHSSGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLR 120
           LARCSGAHVIEFLKYLDQFGKTKVH+S CPYFGHPNPPAPCPCPLKQAWGSLDALIGRLR
Sbjct: 61  LARCSGAHVIEFLKYLDQFGKTKVHASPCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLR 120

Query: 121 AAYEENGGRPESNPFAARAVRIFLREVRESQAKARGIPYEKKKRKRHAAFASAAAPAAAI 180
           AAYEENGGRPESNPFAARAVRI+LREVRE+QAKARGIPYEKKKRKR A  A   A  +  
Sbjct: 121 AAYEENGGRPESNPFAARAVRIYLREVREAQAKARGIPYEKKKRKRPAPTAPPPAETSTS 180

Query: 181 LSVPPETHVVLASVDHQPETS 197
            +  P         D+QPET+
Sbjct: 181 ATTTP--------ADNQPETT 193

[Close]

BLAST of CmaCh13G000460 vs. NCBI nr
Match: gi|147768778|emb|CAN60458.1| (hypothetical protein VITISV_019556 [Vitis vinifera])

HSP 1 Score: 282.7 bits (722), Expect = 5.2e-73
Identity = 147/184 (79.89%), Postives = 153/184 (83.15%), Query Frame = 1


Query: 2   DPVSKPGGGPSERSSAGASAAATTPAPASRYESQKRRDWNTFLQYLKNHKPPLSLARCSG 61
           DP S  G GPS     GA A  ++PAP SRYESQKRRDWNTFLQYLKNHKPPL+LARCSG
Sbjct: 11  DPSS--GEGPSAGGGGGA-AEGSSPAPPSRYESQKRRDWNTFLQYLKNHKPPLTLARCSG 70

Query: 62  AHVIEFLKYLDQFGKTKVHSSGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAYEEN 121
           AHVIEFLKYLDQFGKTKVH SGCPYFGHPNPPAPC CPLKQAWGSLDALIGRLRAAYEEN
Sbjct: 71  AHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCACPLKQAWGSLDALIGRLRAAYEEN 130

Query: 122 GGRPESNPFAARAVRIFLREVRESQAKARGIPYEKKKRKRHAAFASAAAPAAAILSVPPE 181
           GGRPESNPF ARAVRI+LREVRE QAKARGIPYEKKKRKR    A+A   AA  +S P  
Sbjct: 131 GGRPESNPFGARAVRIYLREVREGQAKARGIPYEKKKRKRPTVTATAVV-AATNVSAPAV 190

Query: 182 THVV 186
           T  V
Sbjct: 191 TQGV 190

[Close]

BLAST of CmaCh13G000460 vs. NCBI nr
Match: gi|225434496|ref|XP_002278283.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 [Vitis vinifera])

HSP 1 Score: 282.3 bits (721), Expect = 6.8e-73
Identity = 144/178 (80.90%), Postives = 150/178 (84.27%), Query Frame = 1


Query: 8   GGGPSERSSAGASAAATTPAPASRYESQKRRDWNTFLQYLKNHKPPLSLARCSGAHVIEF 67
           G GPS     GA A  ++PAP SRYESQKRRDWNTFLQYLKNHKPPL+LARCSGAHVIEF
Sbjct: 15  GEGPSAGGGGGA-AEGSSPAPPSRYESQKRRDWNTFLQYLKNHKPPLTLARCSGAHVIEF 74

Query: 68  LKYLDQFGKTKVHSSGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAYEENGGRPES 127
           LKYLDQFGKTKVH SGCPYFGHPNPPAPC CPLKQAWGSLDALIGRLRAAYEENGGRPES
Sbjct: 75  LKYLDQFGKTKVHISGCPYFGHPNPPAPCACPLKQAWGSLDALIGRLRAAYEENGGRPES 134

Query: 128 NPFAARAVRIFLREVRESQAKARGIPYEKKKRKRHAAFASAAAPAAAILSVPPETHVV 186
           NPF ARAVRI+LREVRE QAKARGIPYEKKKRKR    A+A   AA  +S P  T  V
Sbjct: 135 NPFGARAVRIYLREVREGQAKARGIPYEKKKRKRPTVTATAVV-AATNVSAPAVTQGV 190

The following BLAST results are available for this feature:

BLAST of CmaCh13G000460 vs. Swiss-Prot


Match Name	E-value	Identity	Description
G1L7_ORYSJ	9.2e-70	73.12	Protein G1-like7 OS=Oryza sativa subsp. japonica GN=G1L7 PE=1 SV=1	[more]
G1L7_ORYSI	9.2e-70	73.12	Protein G1-like7 OS=Oryza sativa subsp. indica GN=OsI_10694 PE=3 SV=1	[more]
LSH6_ARATH	2.1e-69	78.88	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana GN=LSH6 PE=1 ...	[more]
G1L9_ORYSI	1.3e-68	75.28	Protein G1-like9 OS=Oryza sativa subsp. indica GN=OsI_19565 PE=3 SV=1	[more]
G1L9_ORYSJ	1.3e-68	75.28	Protein G1-like9 OS=Oryza sativa subsp. japonica GN=G1L9 PE=1 SV=1	[more]

BLAST of CmaCh13G000460 vs. TrEMBL


Match Name	E-value	Identity	Description
A5APB4_VITVI	3.6e-73	79.89	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019556 PE=4 SV=1	[more]
F6GUL9_VITVI	4.8e-73	80.90	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g07090 PE=4 SV=...	[more]
A0A068ULC9_COFCA	1.1e-72	82.56	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00028476001 PE=4 SV=1	[more]
M5W0Z1_PRUPE	1.8e-72	77.22	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010883mg PE=4 SV=1	[more]
A0A0B0NCC8_GOSAR	3.1e-72	84.18	Error-prone DNA polymerase OS=Gossypium arboreum GN=F383_04581 PE=4 SV=1	[more]

BLAST of CmaCh13G000460 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G07090.1	1.2e-70	78.88	Protein of unknown function (DUF640)	[more]
AT5G58500.1	1.5e-65	79.86	Protein of unknown function (DUF640)	[more]
AT3G23290.2	2.5e-65	74.05	Protein of unknown function (DUF640)	[more]
AT2G31160.1	3.6e-64	67.88	Protein of unknown function (DUF640)	[more]
AT5G28490.1	4.0e-63	75.89	Protein of unknown function (DUF640)	[more]

BLAST of CmaCh13G000460 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114999\|ref\|XP_008457336.1\|	3.7e-79	73.13	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like isoform X2 [Cucumis m...	[more]
gi\|659114997\|ref\|XP_008457335.1\|	1.4e-78	73.01	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like isoform X1 [Cucumis m...	[more]
gi\|778665225\|ref\|XP_011648517.1\|	1.8e-73	74.63	PREDICTED: protein G1-like3 [Cucumis sativus]	[more]
gi\|147768778\|emb\|CAN60458.1\|	5.2e-73	79.89	hypothetical protein VITISV_019556 [Vitis vinifera]	[more]
gi\|225434496\|ref\|XP_002278283.1\|	6.8e-73	80.90	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006936	ALOG_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh13G000460.1	CmaCh13G000460.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 24..144 score: 3.8
IPR006936	ALOG domain	PROFILE	PS51697	ALOG	coord: 31..158 score: 83
None	No IPR available	PANTHER	PTHR31165	FAMILY NOT NAMED	coord: 8..170 score: 5.8E
None	No IPR available	PANTHER	PTHR31165:SF6	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 6	coord: 8..170 score: 5.8E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh13G000460	Cucsa.151770	Cucumber (Gy14) v1	cgycmaB0418
CmaCh13G000460	Cla008138	Watermelon (97103) v1	cmawmB185
CmaCh13G000460	Csa1G533430	Cucumber (Chinese Long) v2	cmacuB219
CmaCh13G000460	MELO3C020521	Melon (DHL92) v3.5.1	cmameB194
CmaCh13G000460	ClCG03G000450	Watermelon (Charleston Gray)	cmawcgB194
CmaCh13G000460	CSPI01G24170	Wild cucumber (PI 183967)	cmacpiB220
CmaCh13G000460	CmoCh01G007220	Cucurbita moschata (Rifu)	cmacmoB226
CmaCh13G000460	CmoCh13G000360	Cucurbita moschata (Rifu)	cmacmoB218
CmaCh13G000460	Lsi02G012530	Bottle gourd (USVL1VR-Ls)	cmalsiB201
CmaCh13G000460	Cp4.1LG20g07910	Cucurbita pepo (Zucchini)	cmacpeB235
CmaCh13G000460	Cp4.1LG02g11880	Cucurbita pepo (Zucchini)	cmacpeB245
CmaCh13G000460	MELO3C020521.2	Melon (DHL92) v3.6.1	cmamedB215
CmaCh13G000460	CsaV3_1G036470	Cucumber (Chinese Long) v3	cmacucB0250
CmaCh13G000460	Bhi08G000393	Wax gourd	cmawgoB0252
CmaCh13G000460	CsGy1G023650	Cucumber (Gy14) v2	cgybcmaB075
CmaCh13G000460	Carg26036	Silver-seed gourd	carcmaB0866
CmaCh13G000460	Carg07047	Silver-seed gourd	carcmaB0728

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh13G000460	CmaCh01G006950	Cucurbita maxima (Rimu)	cmacmaB220

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh13G000460	Watermelon (97103) v2	cmawmbB220
CmaCh13G000460	Watermelon (97103) v2	cmawmbB225
CmaCh13G000460	Wax gourd	cmawgoB0244
CmaCh13G000460	Cucurbita maxima (Rimu)	cmacmaB228
CmaCh13G000460	Cucurbita maxima (Rimu)	cmacmaB235
CmaCh13G000460	Cucurbita maxima (Rimu)	cmacmaB236
CmaCh13G000460	Cucurbita moschata (Rifu)	cmacmoB238
CmaCh13G000460	Cucurbita moschata (Rifu)	cmacmoB232
CmaCh13G000460	Cucurbita moschata (Rifu)	cmacmoB239
CmaCh13G000460	Watermelon (Charleston Gray)	cmawcgB189
CmaCh13G000460	Watermelon (97103) v1	cmawmB209
CmaCh13G000460	Cucurbita pepo (Zucchini)	cmacpeB231
CmaCh13G000460	Cucurbita pepo (Zucchini)	cmacpeB249
CmaCh13G000460	Bottle gourd (USVL1VR-Ls)	cmalsiB196
CmaCh13G000460	Silver-seed gourd	carcmaB0939