CsGy1G021030 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G021030
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionMADS-box protein 38
LocationChr1 : 19734709 .. 19735427 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAATCTCAAATTTTCCAACAAACAAGCCAAATTTAGAAAGAGATTTAAAAGCTTCCCATGTTAGTGAACAAATTGAACAAAATAATGTGTATAAAACAGACACCAAATTCCGATATTAGAAACATTCAACAACAAATCACAGATCTCCTGATCAGGAATCAATCTCTAAATTTTTCAGTAGACTACGTTATCAATGGGAAGGCGAAAGATCGAGATGAAAATGGTGAAGGATAGAGGTTCTAGACAAGTTACCTTCTCGAAGCGTCGAAACGGTCTGTTCAAGAAAGCGACCGATCTCGCAACTCTGTGCGGTTTAGAGATAGCGATTGTGGTTTTCTCTCCAGGCGGTAAGGCATTCTCGTTCGGCAATCCAAATGTAGAGGAGGTCGTAGATCGGTACCTAGGTTGTGAATGGAAGGCGAATGGGAATCCGGGGGTGAGGGAGAGGGGAATGTTGGAGAAGGAGAATGAGGAACTTTTAGATCTGGTTAAGCAGTTGCAAATGGAGAAGAAGAAGGGAGAGATTATGGAGAAAGAGATGAAATCGAGAGGGGAATTGATGAAAATTGAGGATATGGATTTGAATGAGCTCTTGAAATTGAAGGAATCGTTGGAAAAACTAAGAAAGAACGTGAAGATTGAAGAGAGCGAGTTGGAGGCTTCGTCTTCATTGCTGCTGCTTGCTAATGAAAAACCTGTTCCTGGAGATGGCTGA

mRNA sequence

ATGGGAATCTCAAATTTTCCAACAAACAAGCCAAATTTAGAAAGAGATTTAAAAGCTTCCCATACTACGTTATCAATGGGAAGGCGAAAGATCGAGATGAAAATGGTGAAGGATAGAGGTTCTAGACAAGTTACCTTCTCGAAGCGTCGAAACGGTCTGTTCAAGAAAGCGACCGATCTCGCAACTCTGTGCGGTTTAGAGATAGCGATTGTGGTTTTCTCTCCAGGCGGTAAGGCATTCTCGTTCGGCAATCCAAATGTAGAGGAGGTCGTAGATCGGTACCTAGGTTGTGAATGGAAGGCGAATGGGAATCCGGGGGTGAGGGAGAGGGGAATGTTGGAGAAGGAGAATGAGGAACTTTTAGATCTGGTTAAGCAGTTGCAAATGGAGAAGAAGAAGGGAGAGATTATGGAGAAAGAGATGAAATCGAGAGGGGAATTGATGAAAATTGAGGATATGGATTTGAATGAGCTCTTGAAATTGAAGGAATCGTTGGAAAAACTAAGAAAGAACGTGAAGATTGAAGAGAGCGAGTTGGAGGCTTCGTCTTCATTGCTGCTGCTTGCTAATGAAAAACCTGTTCCTGGAGATGGCTGA

Coding sequence (CDS)

ATGGGAATCTCAAATTTTCCAACAAACAAGCCAAATTTAGAAAGAGATTTAAAAGCTTCCCATACTACGTTATCAATGGGAAGGCGAAAGATCGAGATGAAAATGGTGAAGGATAGAGGTTCTAGACAAGTTACCTTCTCGAAGCGTCGAAACGGTCTGTTCAAGAAAGCGACCGATCTCGCAACTCTGTGCGGTTTAGAGATAGCGATTGTGGTTTTCTCTCCAGGCGGTAAGGCATTCTCGTTCGGCAATCCAAATGTAGAGGAGGTCGTAGATCGGTACCTAGGTTGTGAATGGAAGGCGAATGGGAATCCGGGGGTGAGGGAGAGGGGAATGTTGGAGAAGGAGAATGAGGAACTTTTAGATCTGGTTAAGCAGTTGCAAATGGAGAAGAAGAAGGGAGAGATTATGGAGAAAGAGATGAAATCGAGAGGGGAATTGATGAAAATTGAGGATATGGATTTGAATGAGCTCTTGAAATTGAAGGAATCGTTGGAAAAACTAAGAAAGAACGTGAAGATTGAAGAGAGCGAGTTGGAGGCTTCGTCTTCATTGCTGCTGCTTGCTAATGAAAAACCTGTTCCTGGAGATGGCTGA

Protein sequence

MGISNFPTNKPNLERDLKASHTTLSMGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNPNVEEVVDRYLGCEWKANGNPGVRERGMLEKENEELLDLVKQLQMEKKKGEIMEKEMKSRGELMKIEDMDLNELLKLKESLEKLRKNVKIEESELEASSSLLLLANEKPVPGDG
Homology
[Close]
BLAST of CsGy1G021030 vs. NCBI nr
Match: XP_004147415.1 (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus])

HSP 1 Score: 285.0 bits (728), Expect = 1.9e-73
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0 

Query: 26  MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNP 85
           MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNP
Sbjct: 1   MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNP 60

Query: 86  NVEEVVDRYLGCEWKANGNPGVRERGMLEKENEELLDLVKQLQMEKKKGEIMEKEMXXXX 145
           NVEEVVDRYLGCEWKANGNPGVRERGMLEKENEELLDLVKQLQMEKKKGEIMEKEMXXXX
Sbjct: 61  NVEEVVDRYLGCEWKANGNPGVRERGMLEKENEELLDLVKQLQMEKKKGEIMEKEMXXXX 120

Query: 146 XXXXXXXXXXXXXXXXXXSLEKLRKNVKIEESELEASSSLLLLANEKPVPGDG 199
           XXXXXXXXXXXXXXXXXXSLEKLRKNVKIEESELEASSSLLLLANEKPVPGDG
Sbjct: 121 XXXXXXXXXXXXXXXXXXSLEKLRKNVKIEESELEASSSLLLLANEKPVPGDG 173

[Close]
BLAST of CsGy1G021030 vs. NCBI nr
Match: XP_008444113.1 (PREDICTED: agamous-like MADS-box protein AGL29 isoform X1 [Cucumis melo])

HSP 1 Score: 266.5 bits (680), Expect = 7.0e-68
Identity = 164/173 (94.80%), Postives = 165/173 (95.38%), Query Frame = 0 

Query: 26  MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNP 85
           MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNP
Sbjct: 1   MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNP 60

Query: 86  NVEEVVDRYLGCEWKANGNPGVRERGMLEKENEELLDLVKQLQMEKKKGEIMEKEMXXXX 145
           NVEEVVDRYL CEWK N N  VRERGMLEKENEELLDLVKQLQMEKKKGE+MEKEMXXXX
Sbjct: 61  NVEEVVDRYLSCEWKVNRNTAVRERGMLEKENEELLDLVKQLQMEKKKGEVMEKEMXXXX 120

Query: 146 XXXXXXXXXXXXXXXXXXSLEKLRKNVKIEESELEASSSLLLLANEKPVPGDG 199
           XXXXXXXXXXXXXXXXX SLEKLRKNVKIEESELEAS SLLLLANEKPV GDG
Sbjct: 121 XXXXXXXXXXXXXXXXXESLEKLRKNVKIEESELEASFSLLLLANEKPVRGDG 173

[Close]
BLAST of CsGy1G021030 vs. NCBI nr
Match: XP_016903730.1 (PREDICTED: agamous-like MADS-box protein AGL29 isoform X2 [Cucumis melo])

HSP 1 Score: 229.9 bits (585), Expect = 7.3e-57
Identity = 144/153 (94.12%), Postives = 145/153 (94.77%), Query Frame = 0 

Query: 46  FSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNPNVEEVVDRYLGCEWKANGNP 105
           FSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNPNVEEVVDRYL CEWK N N 
Sbjct: 8   FSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNPNVEEVVDRYLSCEWKVNRNT 67

Query: 106 GVRERGMLEKENEELLDLVKQLQMEKKKGEIMEKEMXXXXXXXXXXXXXXXXXXXXXXSL 165
            VRERGMLEKENEELLDLVKQLQMEKKKGE+MEKEMXXXXXXXXXXXXXXXXXXXXX SL
Sbjct: 68  AVRERGMLEKENEELLDLVKQLQMEKKKGEVMEKEMXXXXXXXXXXXXXXXXXXXXXESL 127

Query: 166 EKLRKNVKIEESELEASSSLLLLANEKPVPGDG 199
           EKLRKNVKIEESELEAS SLLLLANEKPV GDG
Sbjct: 128 EKLRKNVKIEESELEASFSLLLLANEKPVRGDG 160

[Close]
BLAST of CsGy1G021030 vs. NCBI nr
Match: KGN65556.1 (hypothetical protein Csa_1G446900 [Cucumis sativus])

HSP 1 Score: 226.1 bits (575), Expect = 1.1e-55
Identity = 152/198 (76.77%), Postives = 152/198 (76.77%), Query Frame = 0 

Query: 1   MGISNFPTNKPNLERDLKASHTTLSMGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDL 60
           MGISNFPTNKPNLERDLKASH                                       
Sbjct: 1   MGISNFPTNKPNLERDLKASH--------------------------------------- 60

Query: 61  ATLCGLEIAIVVFSPGGKAFSFGNPNVEEVVDRYLGCEWKANGNPGVRERGMLEKENEEL 120
                  IAIVVFSPGGKAFSFGNPNVEEVVDRYLGCEWKANGNPGVRERGMLEKENEEL
Sbjct: 61  -------IAIVVFSPGGKAFSFGNPNVEEVVDRYLGCEWKANGNPGVRERGMLEKENEEL 120

Query: 121 LDLVKQLQMEKKKGEIMEKEMXXXXXXXXXXXXXXXXXXXXXXSLEKLRKNVKIEESELE 180
           LDLVKQLQMEKKKGEIMEKEMXXXXXXXXXXXXXXXXXXXXXXSLEKLRKNVKIEESELE
Sbjct: 121 LDLVKQLQMEKKKGEIMEKEMXXXXXXXXXXXXXXXXXXXXXXSLEKLRKNVKIEESELE 152

Query: 181 ASSSLLLLANEKPVPGDG 199
           ASSSLLLLANEKPVPGDG
Sbjct: 181 ASSSLLLLANEKPVPGDG 152

[Close]
BLAST of CsGy1G021030 vs. NCBI nr
Match: XP_023001476.1 (agamous-like MADS-box protein AGL29 [Cucurbita maxima])

HSP 1 Score: 216.9 bits (551), Expect = 6.4e-53
Identity = 123/172 (71.51%), Postives = 133/172 (77.33%), Query Frame = 0 

Query: 26  MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNP 85
           MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKA DLATLCGLEIAI+VFSPGGKAFSFGNP
Sbjct: 1   MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLEIAIIVFSPGGKAFSFGNP 60

Query: 86  NVEEVVDRYLGCEWKANGNPGVRERGMLEKENEELLDLVKQLQMEKKKGEIMEKEMXXXX 145
           NVEEVVDRYL    K+   P   E GM EKENEEL+DLVKQLQ+EKKKGE++EKEM    
Sbjct: 61  NVEEVVDRYL--NRKSEPIPPASE-GMFEKENEELIDLVKQLQLEKKKGEMLEKEMKSRG 120

Query: 146 XXXXXXXXXXXXXXXXXXSLEKLRKNVKIEESELEASSSLLLLANEKPVPGD 198
                             SLE+LRKNV+++ESELEASSSLLLLANE  V  D
Sbjct: 121 ESIKIEDLDLDELLKLKESLERLRKNVRMKESELEASSSLLLLANEPVVEAD 169

[Close]
BLAST of CsGy1G021030 vs. TAIR10
Match: AT5G60440.1 (AGAMOUS-like 62)

HSP 1 Score: 108.2 bits (269), Expect = 5.8e-24
Identity = 60/127 (47.24%), Postives = 82/127 (64.57%), Query Frame = 0 

Query: 25  SMGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGN 84
           S GR+KIEM  +K+  + QVTFSKRR+GLFKKA++L TLCG E+AIVVFSPG K FSFG+
Sbjct: 5   SKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSFGH 64

Query: 85  PNVEEVVDRYLGCEWKANGNP------------GVRERGMLEKENEELLDLVKQLQMEKK 140
           PNV+ V+DR++      N NP              R   +++  N  L  ++ QL+ EKK
Sbjct: 65  PNVDSVIDRFI------NNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKK 124

[Close]
BLAST of CsGy1G021030 vs. TAIR10
Match: AT2G34440.1 (AGAMOUS-like 29)

HSP 1 Score: 105.1 bits (261), Expect = 4.9e-23
Identity = 67/173 (38.73%), Postives = 104/173 (60.12%), Query Frame = 0 

Query: 26  MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNP 85
           MGRRKI+M+MV+D  +RQVTFSKRR GLFKKA++LATLC  E+ IVVFSPGGK FS+G P
Sbjct: 1   MGRRKIKMEMVQDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKP 60

Query: 86  NVEEVVDRYLGCEWKANGNPGVRERGMLE---KENEELLDLVKQ-LQMEKKKGEIMEKEM 145
           N++ V +R++  E+  + +    + G      K   E LDL+ Q ++ EK++GE  ++++
Sbjct: 61  NLDSVAERFMR-EYDDSDSGDEEKSGNYRPKLKRLSERLDLLNQEVEAEKERGEKSQEKL 120

Query: 146 XXXXXXXXXXXXXXXXXXXXXXSLEKLRK---NVKIEESELEASSSLLLLANE 192
                                   ++L+     ++ + + L+ASS L+LL+ +
Sbjct: 121 ESAGDERFKESIETLTLDELNEYKDRLQTVHGRIEGQVNHLQASSCLMLLSRK 172

[Close]
BLAST of CsGy1G021030 vs. TAIR10
Match: AT2G24840.1 (AGAMOUS-like 61)

HSP 1 Score: 102.4 bits (254), Expect = 3.2e-22
Identity = 57/122 (46.72%), Postives = 80/122 (65.57%), Query Frame = 0 

Query: 25  SMGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGN 84
           S+GR+KI M  +K    RQVTFSKRR GLFKKA++L TLCG EI I+VFSP  K FSFG+
Sbjct: 61  SIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFGH 120

Query: 85  PNVEEVVDRYLGCEWKANGNPGVRERGMLE-------KENEELLDLVKQLQMEKKKGEIM 140
           P+VE V+DRY+     +  N  + +   L+       + N +L  ++ +++ EKKKG+ M
Sbjct: 121 PSVESVLDRYV-----SRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAM 177

[Close]
BLAST of CsGy1G021030 vs. TAIR10
Match: AT3G66656.1 (AGAMOUS-like 91)

HSP 1 Score: 100.5 bits (249), Expect = 1.2e-21
Identity = 65/181 (35.91%), Postives = 99/181 (54.70%), Query Frame = 0 

Query: 26  MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNP 85
           MGRRKI+M+ V+D  ++QVTFSKRR GLFKKA++LATLC  E+ IVVFSPG K +SFG P
Sbjct: 1   MGRRKIKMEKVQDTNTKQVTFSKRRLGLFKKASELATLCNAEVGIVVFSPGNKPYSFGKP 60

Query: 86  NVEEVVDRYL----------GCEWK--ANGNPGVRERGMLEKENEELLDLVKQLQMEKKK 145
           N + + +R+            CE    + GN   +E+ + ++ N     + ++ + EKK 
Sbjct: 61  NFDVIAERFKNEFEEEEEGDSCETSGYSRGNRARQEKKICKRLN----SITEEAEAEKKH 120

Query: 146 GEIMEKEMXXXXXXXXXXXXXXXXXXXXXXSLEKLRK---NVKIEESELEASSSLLLLAN 192
           GE + K +                         K++K    ++   S ++ASSSL+ L+N
Sbjct: 121 GEDLHKWLESAEQDKFNKPIEELTLEELKEFEAKIKKISCGIQSNISHMQASSSLMFLSN 177

[Close]
BLAST of CsGy1G021030 vs. TAIR10
Match: AT1G01530.1 (AGAMOUS-like 28)

HSP 1 Score: 93.6 bits (231), Expect = 1.5e-19
Identity = 43/72 (59.72%), Postives = 58/72 (80.56%), Query Frame = 0 

Query: 25 SMGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGN 84
          ++GRRKIE+  + +  + QVTFSKRR+GLFKK ++L TLC  EIAI+VFSP GKA+SFG+
Sbjct: 5  NLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSFGH 64

Query: 85 PNVEEVVDRYLG 97
          PNV +++D  LG
Sbjct: 65 PNVNKLLDHSLG 76

[Close]
BLAST of CsGy1G021030 vs. Swiss-Prot
Match: sp|Q9FKK2|AGL62_ARATH (Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana OX=3702 GN=AGL62 PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.0e-22
Identity = 60/127 (47.24%), Postives = 82/127 (64.57%), Query Frame = 0 

Query: 25  SMGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGN 84
           S GR+KIEM  +K+  + QVTFSKRR+GLFKKA++L TLCG E+AIVVFSPG K FSFG+
Sbjct: 5   SKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSFGH 64

Query: 85  PNVEEVVDRYLGCEWKANGNP------------GVRERGMLEKENEELLDLVKQLQMEKK 140
           PNV+ V+DR++      N NP              R   +++  N  L  ++ QL+ EKK
Sbjct: 65  PNVDSVIDRFI------NNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKK 124

[Close]
BLAST of CsGy1G021030 vs. Swiss-Prot
Match: sp|O64703|AGL29_ARATH (Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana OX=3702 GN=AGL29 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 8.8e-22
Identity = 67/173 (38.73%), Postives = 104/173 (60.12%), Query Frame = 0 

Query: 26  MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNP 85
           MGRRKI+M+MV+D  +RQVTFSKRR GLFKKA++LATLC  E+ IVVFSPGGK FS+G P
Sbjct: 1   MGRRKIKMEMVQDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKP 60

Query: 86  NVEEVVDRYLGCEWKANGNPGVRERGMLE---KENEELLDLVKQ-LQMEKKKGEIMEKEM 145
           N++ V +R++  E+  + +    + G      K   E LDL+ Q ++ EK++GE  ++++
Sbjct: 61  NLDSVAERFMR-EYDDSDSGDEEKSGNYRPKLKRLSERLDLLNQEVEAEKERGEKSQEKL 120

Query: 146 XXXXXXXXXXXXXXXXXXXXXXSLEKLRK---NVKIEESELEASSSLLLLANE 192
                                   ++L+     ++ + + L+ASS L+LL+ +
Sbjct: 121 ESAGDERFKESIETLTLDELNEYKDRLQTVHGRIEGQVNHLQASSCLMLLSRK 172

[Close]
BLAST of CsGy1G021030 vs. Swiss-Prot
Match: sp|Q4PSU4|AGL61_ARATH (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana OX=3702 GN=AGL61 PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 5.7e-21
Identity = 57/122 (46.72%), Postives = 80/122 (65.57%), Query Frame = 0 

Query: 25  SMGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGN 84
           S+GR+KI M  +K    RQVTFSKRR GLFKKA++L TLCG EI I+VFSP  K FSFG+
Sbjct: 61  SIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFGH 120

Query: 85  PNVEEVVDRYLGCEWKANGNPGVRERGMLE-------KENEELLDLVKQLQMEKKKGEIM 140
           P+VE V+DRY+     +  N  + +   L+       + N +L  ++ +++ EKKKG+ M
Sbjct: 121 PSVESVLDRYV-----SRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAM 177

[Close]
BLAST of CsGy1G021030 vs. Swiss-Prot
Match: sp|Q9LMM8|AGL28_ARATH (Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana OX=3702 GN=AGL28 PE=2 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.7e-18
Identity = 43/72 (59.72%), Postives = 58/72 (80.56%), Query Frame = 0 

Query: 25 SMGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGN 84
          ++GRRKIE+  + +  + QVTFSKRR+GLFKK ++L TLC  EIAI+VFSP GKA+SFG+
Sbjct: 5  NLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSFGH 64

Query: 85 PNVEEVVDRYLG 97
          PNV +++D  LG
Sbjct: 65 PNVNKLLDHSLG 76

[Close]
BLAST of CsGy1G021030 vs. Swiss-Prot
Match: sp|O80807|AGL23_ARATH (Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana OX=3702 GN=AGL23 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.0e-17
Identity = 39/73 (53.42%), Postives = 56/73 (76.71%), Query Frame = 0 

Query: 25 SMGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGN 84
          ++GRRK+E+  +    + QVTFSKR+ GLFKKA++  TLC  +IA++VFSP GK FSFG+
Sbjct: 5  TLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFSFGH 64

Query: 85 PNVEEVVDRYLGC 98
          PNV+ ++D + GC
Sbjct: 65 PNVDVLLDHFRGC 77

[Close]
BLAST of CsGy1G021030 vs. TrEMBL
Match: tr|A0A1S3B9N7|A0A1S3B9N7_CUCME (agamous-like MADS-box protein AGL29 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487550 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 4.6e-68
Identity = 164/173 (94.80%), Postives = 165/173 (95.38%), Query Frame = 0 

Query: 26  MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNP 85
           MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNP
Sbjct: 1   MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNP 60

Query: 86  NVEEVVDRYLGCEWKANGNPGVRERGMLEKENEELLDLVKQLQMEKKKGEIMEKEMXXXX 145
           NVEEVVDRYL CEWK N N  VRERGMLEKENEELLDLVKQLQMEKKKGE+MEKEMXXXX
Sbjct: 61  NVEEVVDRYLSCEWKVNRNTAVRERGMLEKENEELLDLVKQLQMEKKKGEVMEKEMXXXX 120

Query: 146 XXXXXXXXXXXXXXXXXXSLEKLRKNVKIEESELEASSSLLLLANEKPVPGDG 199
           XXXXXXXXXXXXXXXXX SLEKLRKNVKIEESELEAS SLLLLANEKPV GDG
Sbjct: 121 XXXXXXXXXXXXXXXXXESLEKLRKNVKIEESELEASFSLLLLANEKPVRGDG 173

[Close]
BLAST of CsGy1G021030 vs. TrEMBL
Match: tr|A0A1S4E6V9|A0A1S4E6V9_CUCME (agamous-like MADS-box protein AGL29 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487550 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 4.8e-57
Identity = 144/153 (94.12%), Postives = 145/153 (94.77%), Query Frame = 0 

Query: 46  FSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNPNVEEVVDRYLGCEWKANGNP 105
           FSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNPNVEEVVDRYL CEWK N N 
Sbjct: 8   FSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNPNVEEVVDRYLSCEWKVNRNT 67

Query: 106 GVRERGMLEKENEELLDLVKQLQMEKKKGEIMEKEMXXXXXXXXXXXXXXXXXXXXXXSL 165
            VRERGMLEKENEELLDLVKQLQMEKKKGE+MEKEMXXXXXXXXXXXXXXXXXXXXX SL
Sbjct: 68  AVRERGMLEKENEELLDLVKQLQMEKKKGEVMEKEMXXXXXXXXXXXXXXXXXXXXXESL 127

Query: 166 EKLRKNVKIEESELEASSSLLLLANEKPVPGDG 199
           EKLRKNVKIEESELEAS SLLLLANEKPV GDG
Sbjct: 128 EKLRKNVKIEESELEASFSLLLLANEKPVRGDG 160

[Close]
BLAST of CsGy1G021030 vs. TrEMBL
Match: tr|A0A0A0M045|A0A0A0M045_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G446900 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 6.9e-56
Identity = 152/198 (76.77%), Postives = 152/198 (76.77%), Query Frame = 0 

Query: 1   MGISNFPTNKPNLERDLKASHTTLSMGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDL 60
           MGISNFPTNKPNLERDLKASH                                       
Sbjct: 1   MGISNFPTNKPNLERDLKASH--------------------------------------- 60

Query: 61  ATLCGLEIAIVVFSPGGKAFSFGNPNVEEVVDRYLGCEWKANGNPGVRERGMLEKENEEL 120
                  IAIVVFSPGGKAFSFGNPNVEEVVDRYLGCEWKANGNPGVRERGMLEKENEEL
Sbjct: 61  -------IAIVVFSPGGKAFSFGNPNVEEVVDRYLGCEWKANGNPGVRERGMLEKENEEL 120

Query: 121 LDLVKQLQMEKKKGEIMEKEMXXXXXXXXXXXXXXXXXXXXXXSLEKLRKNVKIEESELE 180
           LDLVKQLQMEKKKGEIMEKEMXXXXXXXXXXXXXXXXXXXXXXSLEKLRKNVKIEESELE
Sbjct: 121 LDLVKQLQMEKKKGEIMEKEMXXXXXXXXXXXXXXXXXXXXXXSLEKLRKNVKIEESELE 152

Query: 181 ASSSLLLLANEKPVPGDG 199
           ASSSLLLLANEKPVPGDG
Sbjct: 181 ASSSLLLLANEKPVPGDG 152

[Close]
BLAST of CsGy1G021030 vs. TrEMBL
Match: tr|A0A2P6Q5E6|A0A2P6Q5E6_ROSCH (Putative transcription factor MADS-type1 family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0013531 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.4e-35
Identity = 93/170 (54.71%), Postives = 117/170 (68.82%), Query Frame = 0 

Query: 26  MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNP 85
           MGRRKIEMK V D  SRQVTFSKRR GLFKKA ++ATLCG E+AIVVFSPGGK FSFGNP
Sbjct: 1   MGRRKIEMKKVMDSSSRQVTFSKRRTGLFKKAHEIATLCGAEVAIVVFSPGGKPFSFGNP 60

Query: 86  NVEEVVDRYLGCEWKAN-GNPGVRERG-MLEKENEELLDLVKQLQMEKKKGEIMEKEM-- 145
           NV+ V DR+L  E + N  + GVR  G ++E+ N++L D+VK L+ EKK+GE++ K +  
Sbjct: 61  NVDSVADRFLNQEEEDNTDDRGVRRSGKVVERLNQQLADVVKNLEAEKKRGEVIAKALVK 120

Query: 146 XXXXXXXXXXXXXXXXXXXXXXSLEKLRKNVKIEESELEASSSLLLLANE 192
                                 SLE+L ++VK  ES++EASSSLLLLAN+
Sbjct: 121 AETKWGLTIQERSHGELVKVKQSLEELHESVKARESDMEASSSLLLLANK 170

[Close]
BLAST of CsGy1G021030 vs. TrEMBL
Match: tr|V4W9E1|V4W9E1_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017472mg PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 4.4e-34
Identity = 91/171 (53.22%), Postives = 113/171 (66.08%), Query Frame = 0 

Query: 26  MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNP 85
           MGRRKIEMKMVKD  SRQVTFSKRRNGLFKKA +LATLC   IAIVVFSPGGK FSFG+P
Sbjct: 1   MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHP 60

Query: 86  NVEEVVDRYLGCEW----KANGNPGVRERGMLEKENEELLDLVKQLQMEKKKGEIMEKEM 145
           +V+ VV R L  E     + N +  V +   +E+ NE+L+DLV QL++EKK+GE+++K +
Sbjct: 61  SVDVVVQRLLNWEMDPKDETNSHVDVEQGAKVEQLNEQLIDLVNQLEIEKKRGEMLDKAL 120

Query: 146 ----XXXXXXXXXXXXXXXXXXXXXXSLEKLRKNVKIEESELEASSSLLLL 189
                                     SLEKLR+N+K    ++EASSSLLLL
Sbjct: 121 KAKGLSKYCKKSINDLGLDELLHMKASLEKLRENLKSHIDDMEASSSLLLL 171

The following BLAST results are available for this feature:
BLAST of CsGy1G021030 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004147415.11.9e-73100.00PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus][more]
XP_008444113.17.0e-6894.80PREDICTED: agamous-like MADS-box protein AGL29 isoform X1 [Cucumis melo][more]
XP_016903730.17.3e-5794.12PREDICTED: agamous-like MADS-box protein AGL29 isoform X2 [Cucumis melo][more]
KGN65556.11.1e-5576.77hypothetical protein Csa_1G446900 [Cucumis sativus][more]
XP_023001476.16.4e-5371.51agamous-like MADS-box protein AGL29 [Cucurbita maxima][more]
BLAST of CsGy1G021030 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G60440.15.8e-2447.24AGAMOUS-like 62[more]
AT2G34440.14.9e-2338.73AGAMOUS-like 29[more]
AT2G24840.13.2e-2246.72AGAMOUS-like 61[more]
AT3G66656.11.2e-2135.91AGAMOUS-like 91[more]
AT1G01530.11.5e-1959.72AGAMOUS-like 28[more]
BLAST of CsGy1G021030 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FKK2|AGL62_ARATH1.0e-2247.24Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana OX=3702 GN=AGL62 PE=... [more]
sp|O64703|AGL29_ARATH8.8e-2238.73Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana OX=3702 GN=AGL29 PE=... [more]
sp|Q4PSU4|AGL61_ARATH5.7e-2146.72Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana OX=3702 GN=AGL61 PE=... [more]
sp|Q9LMM8|AGL28_ARATH2.7e-1859.72Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana OX=3702 GN=AGL28 PE=... [more]
sp|O80807|AGL23_ARATH5.0e-1753.42Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana OX=3702 GN=AGL23 PE=... [more]
BLAST of CsGy1G021030 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B9N7|A0A1S3B9N7_CUCME4.6e-6894.80agamous-like MADS-box protein AGL29 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103... [more]
tr|A0A1S4E6V9|A0A1S4E6V9_CUCME4.8e-5794.12agamous-like MADS-box protein AGL29 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103... [more]
tr|A0A0A0M045|A0A0A0M045_CUCSA6.9e-5676.77Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G446900 PE=4 SV=1[more]
tr|A0A2P6Q5E6|A0A2P6Q5E6_ROSCH1.4e-3554.71Putative transcription factor MADS-type1 family OS=Rosa chinensis OX=74649 GN=Rc... [more]
tr|V4W9E1|V4W9E1_9ROSI4.4e-3453.22Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017472mg PE=4 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000977RNA polymerase II regulatory region sequence-specific DNA binding
GO:0003677DNA binding
GO:0046983protein dimerization activity
Vocabulary: Biological Process
TermDefinition
GO:0045944positive regulation of transcription from RNA polymerase II promoter
Vocabulary: INTERPRO
TermDefinition
IPR033896MADS_MEF2-like
IPR036879TF_MADSbox_sf
IPR002100TF_MADSbox
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045944 positive regulation of transcription from RNA polymerase II promoter
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G021030.1CsGy1G021030.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 110..133
NoneNo IPR availableCOILSCoilCoilcoord: 155..185
NoneNo IPR availablePANTHERPTHR11945:SF164SUBFAMILY NOT NAMEDcoord: 23..179
NoneNo IPR availablePANTHERPTHR11945MADS BOX PROTEINcoord: 23..179
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 28..48
score: 48.83
coord: 48..63
score: 63.89
coord: 63..84
score: 38.96
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 26..85
e-value: 2.6E-31
score: 120.0
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 37..82
e-value: 1.9E-22
score: 78.4
IPR002100Transcription factor, MADS-boxPROSITEPS50066MADS_BOX_2coord: 26..86
score: 26.058
IPR036879Transcription factor, MADS-box superfamilyGENE3DG3DSA:3.40.1810.10coord: 38..95
e-value: 3.2E-25
score: 89.4
IPR036879Transcription factor, MADS-box superfamilySUPERFAMILYSSF55455SRF-likecoord: 26..98
IPR033896MADS MEF2-likeCDDcd00265MADS_MEF2_likecoord: 27..98
e-value: 2.17991E-31
score: 109.949

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy1G021030Cla009758Watermelon (97103) v1cgybwmB052
CsGy1G021030Cla019599Watermelon (97103) v1cgybwmB011
CsGy1G021030Csa1G446900Cucumber (Chinese Long) v2cgybcuB002
CsGy1G021030MELO3C002723Melon (DHL92) v3.5.1cgybmeB011
CsGy1G021030MELO3C007148Melon (DHL92) v3.5.1cgybmeB075
CsGy1G021030ClCG01G024450Watermelon (Charleston Gray)cgybwcgB024
CsGy1G021030ClCG03G006990Watermelon (Charleston Gray)cgybwcgB034
CsGy1G021030CSPI06G36130Wild cucumber (PI 183967)cgybcpiB040
CsGy1G021030CSPI01G21340Wild cucumber (PI 183967)cgybcpiB002
CsGy1G021030CmaCh13G005470Cucurbita maxima (Rimu)cgybcmaB062
CsGy1G021030CmaCh07G001180Cucurbita maxima (Rimu)cgybcmaB141
CsGy1G021030CmoCh07G001180Cucurbita moschata (Rifu)cgybcmoB132
CsGy1G021030CmoCh13G005780Cucurbita moschata (Rifu)cgybcmoB059
CsGy1G021030Lsi02G008750Bottle gourd (USVL1VR-Ls)cgyblsiB028
CsGy1G021030Cp4.1LG20g05090Cucurbita pepo (Zucchini)cgybcpeB079
CsGy1G021030Cp4.1LG19g06160Cucurbita pepo (Zucchini)cgybcpeB068
CsGy1G021030MELO3C007148.2Melon (DHL92) v3.6.1cgybmedB070
CsGy1G021030MELO3C002723.2Melon (DHL92) v3.6.1cgybmedB010
CsGy1G021030CsaV3_1G032570Cucumber (Chinese Long) v3cgybcucB001
CsGy1G021030CsaV3_6G051590Cucumber (Chinese Long) v3cgybcucB047
CsGy1G021030Cla97C01G024400Watermelon (97103) v2cgybwmbB012
CsGy1G021030Cla97C03G058240Watermelon (97103) v2cgybwmbB033
CsGy1G021030Bhi03G000056Wax gourdcgybwgoB021
CsGy1G021030Carg19930Silver-seed gourdcarcgybB0789
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CsGy1G021030CsGy6G035540Cucumber (Gy14) v2cgybcgybB038
The following block(s) are covering this gene:
GeneOrganismBlock
CsGy1G021030Cucurbita maxima (Rimu)cgybcmaB094
CsGy1G021030Cucurbita maxima (Rimu)cgybcmaB127
CsGy1G021030Cucurbita moschata (Rifu)cgybcmoB089
CsGy1G021030Cucurbita moschata (Rifu)cgybcmoB117
CsGy1G021030Cucurbita pepo (Zucchini)cgybcpeB006
CsGy1G021030Cucurbita pepo (Zucchini)cgybcpeB022
CsGy1G021030Cucumber (Chinese Long) v2cgybcuB043
CsGy1G021030Bottle gourd (USVL1VR-Ls)cgyblsiB013
CsGy1G021030Silver-seed gourdcarcgybB0431
CsGy1G021030Silver-seed gourdcarcgybB0552
CsGy1G021030Silver-seed gourdcarcgybB0943
CsGy1G021030Watermelon (97103) v2cgybwmbB031
CsGy1G021030Wax gourdcgybwgoB026