CmoCh07G001180 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh07G001180
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionMADS-box transcription factor family protein
LocationCmo_Chr07 : 667194 .. 667937 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGACGGCAGCACCAAAATTAAGCAAACAAAGGGCCGACAAAAGATCGAGATGAAGAAGATTGAAAACGAAGACGACCGCCTCATCACCTTCTCCAAGCGCCGCTCCGGCATCTACAAAAAGGCCAGCGAATTAGCCACCTTGTGCGGCGCTGAAGTCGGCGTGGTCGTGTTTTCCCCAGCTGGAAAGCCCTTTTCCTTTGCTCATCCATGCATCGAATCTGTGGCTAACAAATTCCTTGATGAAAACCCTCAGCCAAACGACAACACTCACCCGCTTGTCGAAGCACATCGACGCCTCAGAATCAACGAGCTGAACCAGCAACACAATCAACTTCTGAGCCAGCTGGATGCCGAGAAGGAGAAAGGTAAGGCGCTTGAGAAACTGAAGAAGGTGAGAGGCAATAACGGGCGTGGTTGGTGGGAGTCTCCAACTGAAGAACTGGGAATTGAGGAATTGCAACAAGTTGATGGATCGCTGGGAGAATTGTACCAAAATGTTTGTCATGAACTCAAAGAGCGCGGCGTTCTTGGATCTTCTTCATACTCAGCTTCAAACACTTTGGGCTTTGATCATGCCGGCCGTGAAGAAACAATTCCTTTCAATATCTTAGCAACTGGAGCTGCTGCTGCTGCTGCTGCTGGTCCTTCTTCCGCTACTTATCTTCCTGATCCTAATCCCTTTGATTATGGACAGCAACAACAACCACATCTCCCTCATCACCACCACCACCATCCATGA

mRNA sequence

ATGGCCGACGGCAGCACCAAAATTAAGCAAACAAAGGGCCGACAAAAGATCGAGATGAAGAAGATTGAAAACGAAGACGACCGCCTCATCACCTTCTCCAAGCGCCGCTCCGGCATCTACAAAAAGGCCAGCGAATTAGCCACCTTGTGCGGCGCTGAAGTCGGCGTGGTCGTGTTTTCCCCAGCTGGAAAGCCCTTTTCCTTTGCTCATCCATGCATCGAATCTGTGGCTAACAAATTCCTTGATGAAAACCCTCAGCCAAACGACAACACTCACCCGCTTGTCGAAGCACATCGACGCCTCAGAATCAACGAGCTGAACCAGCAACACAATCAACTTCTGAGCCAGCTGGATGCCGAGAAGGAGAAAGGTAAGGCGCTTGAGAAACTGAAGAAGGTGAGAGGCAATAACGGGCGTGGTTGGTGGGAGTCTCCAACTGAAGAACTGGGAATTGAGGAATTGCAACAAGTTGATGGATCGCTGGGAGAATTGTACCAAAATGTTTGTCATGAACTCAAAGAGCGCGGCGTTCTTGGATCTTCTTCATACTCAGCTTCAAACACTTTGGGCTTTGATCATGCCGGCCGTGAAGAAACAATTCCTTTCAATATCTTAGCAACTGGAGCTGCTGCTGCTGCTGCTGCTGGTCCTTCTTCCGCTACTTATCTTCCTGATCCTAATCCCTTTGATTATGGACAGCAACAACAACCACATCTCCCTCATCACCACCACCACCATCCATGA

Coding sequence (CDS)

ATGGCCGACGGCAGCACCAAAATTAAGCAAACAAAGGGCCGACAAAAGATCGAGATGAAGAAGATTGAAAACGAAGACGACCGCCTCATCACCTTCTCCAAGCGCCGCTCCGGCATCTACAAAAAGGCCAGCGAATTAGCCACCTTGTGCGGCGCTGAAGTCGGCGTGGTCGTGTTTTCCCCAGCTGGAAAGCCCTTTTCCTTTGCTCATCCATGCATCGAATCTGTGGCTAACAAATTCCTTGATGAAAACCCTCAGCCAAACGACAACACTCACCCGCTTGTCGAAGCACATCGACGCCTCAGAATCAACGAGCTGAACCAGCAACACAATCAACTTCTGAGCCAGCTGGATGCCGAGAAGGAGAAAGGTAAGGCGCTTGAGAAACTGAAGAAGGTGAGAGGCAATAACGGGCGTGGTTGGTGGGAGTCTCCAACTGAAGAACTGGGAATTGAGGAATTGCAACAAGTTGATGGATCGCTGGGAGAATTGTACCAAAATGTTTGTCATGAACTCAAAGAGCGCGGCGTTCTTGGATCTTCTTCATACTCAGCTTCAAACACTTTGGGCTTTGATCATGCCGGCCGTGAAGAAACAATTCCTTTCAATATCTTAGCAACTGGAGCTGCTGCTGCTGCTGCTGCTGGTCCTTCTTCCGCTACTTATCTTCCTGATCCTAATCCCTTTGATTATGGACAGCAACAACAACCACATCTCCCTCATCACCACCACCACCATCCATGA
Homology
[Close]
BLAST of CmoCh07G001180 vs. Swiss-Prot
Match: AGL62_ARATH (Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 9.5e-34
Identity = 94/233 (40.34%), Postives = 130/233 (55.79%), Query Frame = 1 

Query: 8   IKQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFS 67
           +K++KGRQKIEM K++NE +  +TFSKRRSG++KKASEL TLCGAEV +VVFSP  K FS
Sbjct: 2   VKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFS 61

Query: 68  FAHPCIESVANKFLDENPQP--NDNTHPLVEAHRRLRINELNQQHNQLLSQLDAEKEKGK 127
           F HP ++SV ++F++ NP P    N   L E  R   + +LN    Q+LSQL+ EK+K  
Sbjct: 62  FGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYD 121

Query: 128 ALEKLK---KVRGNNGRGWWESPTEELGIEELQQVDGSLGELYQNVCHELKERGVLGSSS 187
            L+K++   K  GN    WWE P EEL + +L+   G+L          LK+   + +S 
Sbjct: 122 ELKKIREKTKALGN----WWEDPVEELALSQLEGFKGNL--------ENLKKVVTVEASR 181

Query: 188 YSASNTLGFDHAGREETIPFNILATGAAAAAAAGPSSATYLPDPNPFDYGQQQ 236
           +  +N   F          F I   G+         S   + D N F+Y Q Q
Sbjct: 182 FFQANVPNFYVGSSSNNAAFGI-DDGSHINPDMDLFSQRRMMDINAFNYNQNQ 221

[Close]
BLAST of CmoCh07G001180 vs. Swiss-Prot
Match: AGL61_ARATH (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.0e-31
Identity = 74/164 (45.12%), Postives = 109/164 (66.46%), Query Frame = 1 

Query: 6   TKIKQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKP 65
           +K K++ GRQKI M KI+ E  R +TFSKRR+G++KKASEL TLCGAE+G++VFSPA KP
Sbjct: 56  SKKKESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKP 115

Query: 66  FSFAHPCIESVANKFLDENPQPNDNTHPLVEAHRRLRINELNQQHNQLLSQLDAEKEKGK 125
           FSF HP +ESV ++++  N      +  L  +       ELN Q   +LS+++ EK+KG+
Sbjct: 116 FSFGHPSVESVLDRYVSRNNMSLAQSQQLQGS--PAASCELNMQLTHILSEVEEEKKKGQ 175

Query: 126 ALEKLKKVRGNNGR-GWWESPTEELGIEELQQVDGSLGELYQNV 169
           A+E+++K         WWE P EE+ + +LQ++  +L EL + V
Sbjct: 176 AMEEMRKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTV 217

[Close]
BLAST of CmoCh07G001180 vs. Swiss-Prot
Match: AGL29_ARATH (Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana GN=AGL29 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.1e-21
Identity = 65/175 (37.14%), Postives = 107/175 (61.14%), Query Frame = 1 

Query: 13  GRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSFAHPC 72
           GR+KI+M+ +++ + R +TFSKRR+G++KKASELATLC AE+G+VVFSP GKPFS+  P 
Sbjct: 2   GRRKIKMEMVQDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKPN 61

Query: 73  IESVANKFLDENPQPNDNTHPLVEAHRRLRINELNQQHNQLLSQLDAEKEKG-KALEKLK 132
           ++SVA +F+ E    +D+       + R ++  L+++ + L  +++AEKE+G K+ EKL+
Sbjct: 62  LDSVAERFMREY-DDSDSGDEEKSGNYRPKLKRLSERLDLLNQEVEAEKERGEKSQEKLE 121

Query: 133 KVRGNNGRGWWESPTEELGIEELQQ-----------VDGSLGELYQNVCHELKER 176
                 G   ++   E L ++EL +           ++G +  L  + C  L  R
Sbjct: 122 SA----GDERFKESIETLTLDELNEYKDRLQTVHGRIEGQVNHLQASSCLMLLSR 171

[Close]
BLAST of CmoCh07G001180 vs. Swiss-Prot
Match: AGL23_ARATH (Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana GN=AGL23 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 7.8e-20
Identity = 58/186 (31.18%), Postives = 102/186 (54.84%), Query Frame = 1 

Query: 8   IKQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFS 67
           +K+T GR+K+E+ K+  E +  +TFSKR++G++KKASE  TLC A++ ++VFSPAGK FS
Sbjct: 2   VKKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFS 61

Query: 68  FAHPCIESVANKFLDENPQPNDNTHPLVEAHRRLRINELNQQHNQLLSQLDAEKEKGKAL 127
           F HP ++ + + F         N   L E++ +L +  LN+ + ++ ++++ E +K K  
Sbjct: 62  FGHPNVDVLLDHF--RGCVVGHNNTNLDESYTKLHVQMLNKSYTEVKAEVEKE-QKNKQS 121

Query: 128 EKLKKVRGNNGRGWWESPTEELGIEE-------LQQVDGSLGELYQNVCHELKERGVLGS 187
               +    N   WW     EL + +       L+ +   + E    + H+      +GS
Sbjct: 122 RAQNERENENAEEWWSKSPLELNLSQSTCMIRVLKDLKKIVDEKAIQLIHQTNPNFYVGS 181

[Close]
BLAST of CmoCh07G001180 vs. Swiss-Prot
Match: AGL28_ARATH (Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana GN=AGL28 PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.7e-19
Identity = 54/141 (38.30%), Postives = 88/141 (62.41%), Query Frame = 1 

Query: 9   KQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 68
           ++  GR+KIE+ K+ NE +  +TFSKRRSG++KK SEL TLC AE+ ++VFSP+GK +SF
Sbjct: 3   RKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSF 62

Query: 69  AHPCIESVANKFLDEN--PQPNDNTHPLVEAHRRLRINELNQQHNQLLSQLDAEKEKGKA 128
            HP +    NK LD +       N     E+  +LRI  LN+   +++++ + E+E  ++
Sbjct: 63  GHPNV----NKLLDHSLGRVIRHNNTNFAESRTKLRIQMLNESLTEVMAEKEKEQETKQS 122

Query: 129 LEKLKKVRGNNGRGWWESPTE 148
           + + ++   +  + W  SPTE
Sbjct: 123 IVQNERENKDAEKWWRNSPTE 139

[Close]
BLAST of CmoCh07G001180 vs. TrEMBL
Match: A0A0A0KNT7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G522745 PE=4 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 4.5e-83
Identity = 181/277 (65.34%), Postives = 197/277 (71.12%), Query Frame = 1 

Query: 9   KQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 68
           KQTKGRQKIEMKKI NEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF
Sbjct: 15  KQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 74

Query: 69  AHPCIESVANKFLDENPQPNDN----------------------------THPLVEAHRR 128
           AHPCIE++ANKFL+ N     N                             HPLVEAHRR
Sbjct: 75  AHPCIETIANKFLNGNKNNKGNNDDNNNNGDSSSSNNNNNNSNNNNNSNAAHPLVEAHRR 134

Query: 129 LRINELNQQHNQLLSQLDAEKEKGKALEKLKKVRGNNGRGWWESPTEELGIEELQQVDGS 188
           +RINELNQQHNQLLSQLDAEKEKGKALEKLK+VRG NGRGWWE+PTEELGIEELQ+VD S
Sbjct: 135 VRINELNQQHNQLLSQLDAEKEKGKALEKLKRVRG-NGRGWWETPTEELGIEELQEVDAS 194

Query: 189 LGELYQNVCHELKERGVLGSSSYSASN------TLGF----DHAGREETIPFNILATGAA 245
            GE+Y NVCH+LK+RGV+G  SY+  N      ++GF    D  G EETIPFNILA    
Sbjct: 195 FGEIYSNVCHQLKQRGVIGCCSYNNYNNNMNNSSMGFPLTNDQLG-EETIPFNILAGNVP 254

[Close]
BLAST of CmoCh07G001180 vs. TrEMBL
Match: A0A061GD19_THECC (Agamous 57 OS=Theobroma cacao GN=TCM_029519 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 4.2e-57
Identity = 112/177 (63.28%), Postives = 145/177 (81.92%), Query Frame = 1 

Query: 9   KQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 68
           K+T+GRQKIEMKKIENEDDRLITFSKRRSGIYKKASELAT+CGAE+  +VFSPAGKPFS+
Sbjct: 163 KKTRGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATMCGAEIAFIVFSPAGKPFSY 222

Query: 69  AHPCIESVANKFLDENPQPNDNTHPLVEAHRRLRINELNQQHNQLLSQLDAEKEKGKALE 128
            HP +ESV N++L++NP PNDNTHPLVEAHR++RIN L QQHN+L++QLDAEKE+GK L+
Sbjct: 223 GHPSVESVVNRYLNQNPLPNDNTHPLVEAHRKVRINTLAQQHNELVTQLDAEKERGKMLD 282

Query: 129 KLKKVRGNNGRGWWESPTEELGIEELQQVDGSLGELYQNVCHELKERGVLGSSSYSA 186
           +L   RG   +GWWE+P ++L  +EL+++  S  EL  ++  ++KE+    +SS  A
Sbjct: 283 QL--TRGKETKGWWEAPIDQLNQQELEKLYLSFAELRTSLHSKMKEKSAEATSSQLA 337

[Close]
BLAST of CmoCh07G001180 vs. TrEMBL
Match: B9S146_RICCO (Mads box protein, putative OS=Ricinus communis GN=RCOM_0633680 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 1.2e-56
Identity = 110/178 (61.80%), Postives = 145/178 (81.46%), Query Frame = 1 

Query: 9   KQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 68
           KQTKGRQKI MK+IENE+DRLITFSKRRSGIYKKASEL TLCGAEVG++VFSPAGKPFSF
Sbjct: 5   KQTKGRQKITMKRIENEEDRLITFSKRRSGIYKKASELITLCGAEVGILVFSPAGKPFSF 64

Query: 69  AHPCIESVANKFLDENPQPNDNTHPLVEAHRRLRINELNQQHNQLLSQLDAEKEKGKALE 128
            HP +ES+AN+FL +N  P+DNTHPLVEAHR++RINELN+Q+N+LL++L++EKE+G  L+
Sbjct: 65  GHPSLESIANRFLGKNVPPSDNTHPLVEAHRKMRINELNKQYNELLNRLESEKERGSMLK 124

Query: 129 KLKKVRGNNGRGWWESPTEELGIEELQQVDGSLGELYQNVCHELKERGVLGSSSYSAS 187
           K   +RG     WWE+P ++L ++EL+Q+     EL+  +C ++ E+   G S +S+S
Sbjct: 125 KT--IRGKGCNNWWEAPIDDLNMQELEQIYAMFEELHSTLCKKMNEKRNNGVSIWSSS 180

[Close]
BLAST of CmoCh07G001180 vs. TrEMBL
Match: B9H3Z2_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0004s13590g PE=4 SV=2)

HSP 1 Score: 220.3 bits (560), Expect = 2.6e-54
Identity = 110/171 (64.33%), Postives = 142/171 (83.04%), Query Frame = 1 

Query: 9   KQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 68
           KQT+GRQKI +K+IENEDDRLITFSKRRSGIYKKASEL TLCGAEV V+VFSPAGK FSF
Sbjct: 4   KQTRGRQKIAIKRIENEDDRLITFSKRRSGIYKKASELVTLCGAEVAVLVFSPAGKAFSF 63

Query: 69  AHPCIESVANKFLDENPQPNDNTHPLVEAHRRLRINELNQQHNQLLSQLDAEKEKGKALE 128
            HP IESVAN+FL +N  PNDNTHPLVEAHR++RINELNQQHN+LLS+++AE+++GK L+
Sbjct: 64  GHPSIESVANRFLGQNIAPNDNTHPLVEAHRKVRINELNQQHNELLSEMEAERDRGKVLK 123

Query: 129 KLKKVRGNNGRGWWESPTEELGIEELQQVDGSLGELYQNV---CHELKERG 177
           +    + +  +GWWE+P +EL ++EL+Q++  L E ++N+    +EL+  G
Sbjct: 124 EGTSEKSS--QGWWEAPIDELSLQELKQMNVMLEEFHKNLHKTINELRRNG 172

[Close]
BLAST of CmoCh07G001180 vs. TrEMBL
Match: V4RKC3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007104mg PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 3.7e-53
Identity = 110/175 (62.86%), Postives = 139/175 (79.43%), Query Frame = 1 

Query: 9   KQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 68
           K+T+GRQKIEMKKIENEDDR+ITFSKRRSGIYKKASEL TL GAE+G+VVFSP+GKPFSF
Sbjct: 4   KKTRGRQKIEMKKIENEDDRMITFSKRRSGIYKKASELVTLTGAEIGIVVFSPSGKPFSF 63

Query: 69  AHPCIESVANKFLDENPQ-PNDNTHPLVEAHRRLRINELNQQHNQLLSQLDAEKEKGKAL 128
            HP +E+VAN+FL  + + PNDNTHPLVEAHRR+RINELNQQHN+LL Q+D EK + K L
Sbjct: 64  GHPSLEAVANRFLGSSQEHPNDNTHPLVEAHRRVRINELNQQHNELLRQVDEEKAREKIL 123

Query: 129 EKLKKVRGNNGRGWWESPTEELGIEELQQVDGSLGELYQNVCHELKERGVLGSSS 183
           ++ +K R      WWE+P +EL  +EL Q+D ++ +L++    +L E+    SSS
Sbjct: 124 KQNRKGRETQPH-WWETPVDELNHQELLQMDAAIDDLHKTFLAKLNEKTAAASSS 177

[Close]
BLAST of CmoCh07G001180 vs. TAIR10
Match: AT5G60440.1 (AT5G60440.1 AGAMOUS-like 62)

HSP 1 Score: 145.2 bits (365), Expect = 5.3e-35
Identity = 94/233 (40.34%), Postives = 130/233 (55.79%), Query Frame = 1 

Query: 8   IKQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFS 67
           +K++KGRQKIEM K++NE +  +TFSKRRSG++KKASEL TLCGAEV +VVFSP  K FS
Sbjct: 2   VKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFS 61

Query: 68  FAHPCIESVANKFLDENPQP--NDNTHPLVEAHRRLRINELNQQHNQLLSQLDAEKEKGK 127
           F HP ++SV ++F++ NP P    N   L E  R   + +LN    Q+LSQL+ EK+K  
Sbjct: 62  FGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYD 121

Query: 128 ALEKLK---KVRGNNGRGWWESPTEELGIEELQQVDGSLGELYQNVCHELKERGVLGSSS 187
            L+K++   K  GN    WWE P EEL + +L+   G+L          LK+   + +S 
Sbjct: 122 ELKKIREKTKALGN----WWEDPVEELALSQLEGFKGNL--------ENLKKVVTVEASR 181

Query: 188 YSASNTLGFDHAGREETIPFNILATGAAAAAAAGPSSATYLPDPNPFDYGQQQ 236
           +  +N   F          F I   G+         S   + D N F+Y Q Q
Sbjct: 182 FFQANVPNFYVGSSSNNAAFGI-DDGSHINPDMDLFSQRRMMDINAFNYNQNQ 221

[Close]
BLAST of CmoCh07G001180 vs. TAIR10
Match: AT2G24840.1 (AT2G24840.1 AGAMOUS-like 61)

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-32
Identity = 74/164 (45.12%), Postives = 109/164 (66.46%), Query Frame = 1 

Query: 6   TKIKQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKP 65
           +K K++ GRQKI M KI+ E  R +TFSKRR+G++KKASEL TLCGAE+G++VFSPA KP
Sbjct: 56  SKKKESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKP 115

Query: 66  FSFAHPCIESVANKFLDENPQPNDNTHPLVEAHRRLRINELNQQHNQLLSQLDAEKEKGK 125
           FSF HP +ESV ++++  N      +  L  +       ELN Q   +LS+++ EK+KG+
Sbjct: 116 FSFGHPSVESVLDRYVSRNNMSLAQSQQLQGS--PAASCELNMQLTHILSEVEEEKKKGQ 175

Query: 126 ALEKLKKVRGNNGR-GWWESPTEELGIEELQQVDGSLGELYQNV 169
           A+E+++K         WWE P EE+ + +LQ++  +L EL + V
Sbjct: 176 AMEEMRKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTV 217

[Close]
BLAST of CmoCh07G001180 vs. TAIR10
Match: AT3G04100.1 (AT3G04100.1 AGAMOUS-like 57)

HSP 1 Score: 127.9 bits (320), Expect = 8.8e-30
Identity = 69/169 (40.83%), Postives = 111/169 (65.68%), Query Frame = 1 

Query: 7   KIKQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPF 66
           K ++TKG+QKIEMKK+EN  DR+ITFSKR++GI+KK +EL  +C  EV  ++FS   KP+
Sbjct: 8   KGRKTKGKQKIEMKKVENYGDRMITFSKRKTGIFKKMNELVAMCDVEVAFLIFSQPKKPY 67

Query: 67  SFAHPCIESVANKFLD---ENPQPNDNTHPLVEAHRRLRINELNQQHNQLLSQLDAEKEK 126
           +FAHP ++ VA++  +   + P   D+T PLVEA+++ R+++L ++   L  +L  + EK
Sbjct: 68  TFAHPSMKKVADRLKNPSRQEPLERDDTRPLVEAYKKRRLHDLVKKMEALEEELAMDLEK 127

Query: 127 GKALEKLKKVRGNNGRGWWESPTEELGIEELQQVDGSLGELYQNVCHEL 173
            K L++ +  +    + WW  P+E L  +ELQQ   ++ EL  N+C  +
Sbjct: 128 LKLLKESRNEK-KLDKMWWNFPSEGLSAKELQQRYQAMLELRDNLCDNM 175

[Close]
BLAST of CmoCh07G001180 vs. TAIR10
Match: AT4G36590.1 (AT4G36590.1 MADS-box transcription factor family protein)

HSP 1 Score: 120.2 bits (300), Expect = 1.8e-27
Identity = 70/174 (40.23%), Postives = 105/174 (60.34%), Query Frame = 1 

Query: 8   IKQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFS 67
           ++ TKGRQKIEMKK+ENE +  +TFSKRR G++KKASEL TL GAE+ ++VFSP GK FS
Sbjct: 2   VRSTKGRQKIEMKKMENESNLQVTFSKRRFGLFKKASELCTLSGAEILLIVFSPGGKVFS 61

Query: 68  FAHPCIESVANKFLDENPQPN-------DNTHPLVEAHRRLRINELNQQHNQLLSQLDAE 127
           F HP ++ + ++F   NP  N       +N   LVE      I  LN    ++L+  + E
Sbjct: 62  FGHPSVQELIHRF--SNPNHNSAIVHHQNNNLQLVETRPDRNIQYLNNILTEVLANQEKE 121

Query: 128 KEKGKALEKLKKVRGNNGRGWWESPTEELGIEELQQVDGSLGELYQNVCHELKE 175
           K+K   L+ LK+ R   G  W+E   ++L + E  Q+  +L ++ + +  E+ +
Sbjct: 122 KQKRMVLDLLKESREQVG-NWYEKDVKDLDMNETNQLISALQDVKKKLVREMSQ 172

[Close]
BLAST of CmoCh07G001180 vs. TAIR10
Match: AT1G29962.1 (AT1G29962.1 AGAMOUS-like 64)

HSP 1 Score: 119.4 bits (298), Expect = 3.1e-27
Identity = 65/173 (37.57%), Postives = 108/173 (62.43%), Query Frame = 1 

Query: 7   KIKQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPF 66
           K K+TKG+Q+I +KKIE ++DRL+T SKRR+GIY K SEL+ LCGAEV  + +S +GKP+
Sbjct: 2   KPKKTKGKQRINIKKIEKDEDRLVTLSKRRNGIYTKLSELSILCGAEVAFLGYSCSGKPY 61

Query: 67  SFAHPCIESVANKFLDENPQPNDNT---HPLVEAHRRLRINELNQQHNQLLSQLDAEKEK 126
           +F  P  ++VA +FL+     + ++     ++ AH++ +I EL + +N+L+ ++  E+ K
Sbjct: 62  TFGSPSFQAVAERFLNGEASSSSSSSLQRSVMNAHQQAKIQELCKVYNRLVEEITVEEVK 121

Query: 127 GKALEKLKKVRGNNGRGWWE-SPTEELGIEELQQVDGSLGELYQNVCHELKER 176
            K    L ++   N   WW+  P +    EE++++     ELY+ +C E   R
Sbjct: 122 LKKTAALAEMMPMNEDAWWKVDPNDVKDREEVKKMMEKHQELYEKLCEEAASR 174

[Close]
BLAST of CmoCh07G001180 vs. NCBI nr
Match: gi|778721341|ref|XP_011658286.1| (PREDICTED: agamous-like MADS-box protein AGL61 [Cucumis sativus])

HSP 1 Score: 315.8 bits (808), Expect = 6.5e-83
Identity = 181/277 (65.34%), Postives = 197/277 (71.12%), Query Frame = 1 

Query: 9   KQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 68
           KQTKGRQKIEMKKI NEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF
Sbjct: 15  KQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 74

Query: 69  AHPCIESVANKFLDENPQPNDN----------------------------THPLVEAHRR 128
           AHPCIE++ANKFL+ N     N                             HPLVEAHRR
Sbjct: 75  AHPCIETIANKFLNGNKNNKGNNDDNNNNGDSSSSNNNNNNSNNNNNSNAAHPLVEAHRR 134

Query: 129 LRINELNQQHNQLLSQLDAEKEKGKALEKLKKVRGNNGRGWWESPTEELGIEELQQVDGS 188
           +RINELNQQHNQLLSQLDAEKEKGKALEKLK+VRG NGRGWWE+PTEELGIEELQ+VD S
Sbjct: 135 VRINELNQQHNQLLSQLDAEKEKGKALEKLKRVRG-NGRGWWETPTEELGIEELQEVDAS 194

Query: 189 LGELYQNVCHELKERGVLGSSSYSASN------TLGF----DHAGREETIPFNILATGAA 245
            GE+Y NVCH+LK+RGV+G  SY+  N      ++GF    D  G EETIPFNILA    
Sbjct: 195 FGEIYSNVCHQLKQRGVIGCCSYNNYNNNMNNSSMGFPLTNDQLG-EETIPFNILAGNVP 254

[Close]
BLAST of CmoCh07G001180 vs. NCBI nr
Match: gi|659078296|ref|XP_008439651.1| (PREDICTED: LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL61 [Cucumis melo])

HSP 1 Score: 313.2 bits (801), Expect = 4.2e-82
Identity = 184/277 (66.43%), Postives = 200/277 (72.20%), Query Frame = 1 

Query: 9   KQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 68
           KQTKGRQKIEMKKI NEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF
Sbjct: 15  KQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 74

Query: 69  AHPCIESVANKFLDENPQP---------------------------NDNTHPLVEAHRRL 128
           AHPCIE++ANKFL++  +                            N+  HPLVEAHRR+
Sbjct: 75  AHPCIETIANKFLNDKNKTRETRMITITTTTVAAAANNSNNKISINNNAAHPLVEAHRRV 134

Query: 129 RINELNQQHNQLLSQLDAEKEKGKALEKLKKVRGNNGRGWWESPTEELGIEELQQVDGSL 188
           RINELNQQHNQLLSQLDAEKEKGKALEKLKKVRG NGRGWWE+PTEELGI+ELQ+VD S 
Sbjct: 135 RINELNQQHNQLLSQLDAEKEKGKALEKLKKVRG-NGRGWWETPTEELGIDELQEVDASF 194

Query: 189 GELYQNVCHELKERGVLGSSSYSASNT------LGF---DHAGREETIPFNILATGAAAA 248
           GE+Y NVCH+LK+RGV+G  SY+  N       +GF   D  G EETIPFNILA G    
Sbjct: 195 GEIYSNVCHQLKQRGVIGCCSYNNYNNNITNSPMGFTTNDQLG-EETIPFNILA-GNVPP 254

[Close]
BLAST of CmoCh07G001180 vs. NCBI nr
Match: gi|1009106884|ref|XP_015876782.1| (PREDICTED: agamous-like MADS-box protein AGL62 [Ziziphus jujuba])

HSP 1 Score: 255.4 bits (651), Expect = 1.0e-64
Identity = 131/199 (65.83%), Postives = 154/199 (77.39%), Query Frame = 1 

Query: 9   KQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 68
           KQTKGRQKIEMK+IENEDDRLITFSKRRSGIYKK+SEL TLCGAEVGVV+FSP+GKPFSF
Sbjct: 4   KQTKGRQKIEMKRIENEDDRLITFSKRRSGIYKKSSELVTLCGAEVGVVIFSPSGKPFSF 63

Query: 69  AHPCIESVANKFLDENPQPNDNTHPLVEAHRRLRINELNQQHNQLLSQLDAEKEKGKALE 128
           AHP IES+AN+FL++NP   DNTHPLVEAHRR+RI+ELNQQHN L +QL+AEKE+GK L+
Sbjct: 64  AHPSIESIANRFLNQNPPQTDNTHPLVEAHRRVRIDELNQQHNDLHNQLEAEKERGKELQ 123

Query: 129 KLKKVRGNNGRGWWESPTEELGIEELQQVDGSLGELYQNVCHELKERGVLGSSSYSASNT 188
            L + RGN  +GWWE+P EELG EELQ +  SL EL++N+C+ +K R     SS S    
Sbjct: 124 MLARARGNQ-QGWWETPLEELGFEELQNMHASLEELHRNICNHVKGRSRFPMSSSSFHGG 183

Query: 189 LGFDHAGREETIPFNILAT 208
            G    G       N  AT
Sbjct: 184 AGTSAQGSMNPFLANASAT 201

[Close]
BLAST of CmoCh07G001180 vs. NCBI nr
Match: gi|590622712|ref|XP_007025123.1| (Agamous 57 [Theobroma cacao])

HSP 1 Score: 229.6 bits (584), Expect = 6.1e-57
Identity = 112/177 (63.28%), Postives = 145/177 (81.92%), Query Frame = 1 

Query: 9   KQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 68
           K+T+GRQKIEMKKIENEDDRLITFSKRRSGIYKKASELAT+CGAE+  +VFSPAGKPFS+
Sbjct: 163 KKTRGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATMCGAEIAFIVFSPAGKPFSY 222

Query: 69  AHPCIESVANKFLDENPQPNDNTHPLVEAHRRLRINELNQQHNQLLSQLDAEKEKGKALE 128
            HP +ESV N++L++NP PNDNTHPLVEAHR++RIN L QQHN+L++QLDAEKE+GK L+
Sbjct: 223 GHPSVESVVNRYLNQNPLPNDNTHPLVEAHRKVRINTLAQQHNELVTQLDAEKERGKMLD 282

Query: 129 KLKKVRGNNGRGWWESPTEELGIEELQQVDGSLGELYQNVCHELKERGVLGSSSYSA 186
           +L   RG   +GWWE+P ++L  +EL+++  S  EL  ++  ++KE+    +SS  A
Sbjct: 283 QL--TRGKETKGWWEAPIDQLNQQELEKLYLSFAELRTSLHSKMKEKSAEATSSQLA 337

[Close]
BLAST of CmoCh07G001180 vs. NCBI nr
Match: gi|255557369|ref|XP_002519715.1| (PREDICTED: agamous-like MADS-box protein AGL61 [Ricinus communis])

HSP 1 Score: 228.0 bits (580), Expect = 1.8e-56
Identity = 110/178 (61.80%), Postives = 145/178 (81.46%), Query Frame = 1 

Query: 9   KQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 68
           KQTKGRQKI MK+IENE+DRLITFSKRRSGIYKKASEL TLCGAEVG++VFSPAGKPFSF
Sbjct: 5   KQTKGRQKITMKRIENEEDRLITFSKRRSGIYKKASELITLCGAEVGILVFSPAGKPFSF 64

Query: 69  AHPCIESVANKFLDENPQPNDNTHPLVEAHRRLRINELNQQHNQLLSQLDAEKEKGKALE 128
            HP +ES+AN+FL +N  P+DNTHPLVEAHR++RINELN+Q+N+LL++L++EKE+G  L+
Sbjct: 65  GHPSLESIANRFLGKNVPPSDNTHPLVEAHRKMRINELNKQYNELLNRLESEKERGSMLK 124

Query: 129 KLKKVRGNNGRGWWESPTEELGIEELQQVDGSLGELYQNVCHELKERGVLGSSSYSAS 187
           K   +RG     WWE+P ++L ++EL+Q+     EL+  +C ++ E+   G S +S+S
Sbjct: 125 KT--IRGKGCNNWWEAPIDDLNMQELEQIYAMFEELHSTLCKKMNEKRNNGVSIWSSS 180

The following BLAST results are available for this feature:
BLAST of CmoCh07G001180 vs. Swiss-Prot
Match NameE-valueIdentityDescription
AGL62_ARATH9.5e-3440.34Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1[more]
AGL61_ARATH2.0e-3145.12Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1[more]
AGL29_ARATH1.1e-2137.14Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana GN=AGL29 PE=2 SV=1[more]
AGL23_ARATH7.8e-2031.18Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana GN=AGL23 PE=2 SV=1[more]
AGL28_ARATH1.7e-1938.30Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana GN=AGL28 PE=2 SV=1[more]
BLAST of CmoCh07G001180 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KNT7_CUCSA4.5e-8365.34Uncharacterized protein OS=Cucumis sativus GN=Csa_6G522745 PE=4 SV=1[more]
A0A061GD19_THECC4.2e-5763.28Agamous 57 OS=Theobroma cacao GN=TCM_029519 PE=4 SV=1[more]
B9S146_RICCO1.2e-5661.80Mads box protein, putative OS=Ricinus communis GN=RCOM_0633680 PE=4 SV=1[more]
B9H3Z2_POPTR2.6e-5464.33Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0004s13590g P... [more]
V4RKC3_9ROSI3.7e-5362.86Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007104mg PE=4 SV=1[more]
BLAST of CmoCh07G001180 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G60440.15.3e-3540.34 AGAMOUS-like 62[more]
AT2G24840.11.1e-3245.12 AGAMOUS-like 61[more]
AT3G04100.18.8e-3040.83 AGAMOUS-like 57[more]
AT4G36590.11.8e-2740.23 MADS-box transcription factor family protein[more]
AT1G29962.13.1e-2737.57 AGAMOUS-like 64[more]
BLAST of CmoCh07G001180 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778721341|ref|XP_011658286.1|6.5e-8365.34PREDICTED: agamous-like MADS-box protein AGL61 [Cucumis sativus][more]
gi|659078296|ref|XP_008439651.1|4.2e-8266.43PREDICTED: LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL61 [Cucumis mel... [more]
gi|1009106884|ref|XP_015876782.1|1.0e-6465.83PREDICTED: agamous-like MADS-box protein AGL62 [Ziziphus jujuba][more]
gi|590622712|ref|XP_007025123.1|6.1e-5763.28Agamous 57 [Theobroma cacao][more]
gi|255557369|ref|XP_002519715.1|1.8e-5661.80PREDICTED: agamous-like MADS-box protein AGL61 [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002100TF_MADSbox
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046983protein dimerization activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0045944 positive regulation of transcription from RNA polymerase II promoter
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G001180.1CmoCh07G001180.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 49..70
score: 3.6E-20coord: 14..34
score: 3.6E-20coord: 34..49
score: 3.6
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 21..68
score: 2.9
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 12..71
score: 1.2
IPR002100Transcription factor, MADS-boxPROFILEPS50066MADS_BOX_2coord: 12..72
score: 25
IPR002100Transcription factor, MADS-boxunknownSSF55455SRF-likecoord: 13..88
score: 3.79
NoneNo IPR availableunknownCoilCoilcoord: 103..123
scor
NoneNo IPR availablePANTHERPTHR11945MADS BOX PROTEINcoord: 13..168
score: 8.7
NoneNo IPR availablePANTHERPTHR11945:SF185AGAMOUS-LIKE MADS-BOX PROTEIN AGL62coord: 13..168
score: 8.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh07G001180Cucsa.047600Cucumber (Gy14) v1cgycmoB0043
CmoCh07G001180Cucsa.212320Cucumber (Gy14) v1cgycmoB0620
CmoCh07G001180CmaCh13G005470Cucurbita maxima (Rimu)cmacmoB240
CmoCh07G001180CmaCh07G001180Cucurbita maxima (Rimu)cmacmoB875
CmoCh07G001180Cla009758Watermelon (97103) v1cmowmB816
CmoCh07G001180Cla019599Watermelon (97103) v1cmowmB809
CmoCh07G001180MELO3C002723Melon (DHL92) v3.5.1cmomeB771
CmoCh07G001180MELO3C007148Melon (DHL92) v3.5.1cmomeB782
CmoCh07G001180ClCG01G024450Watermelon (Charleston Gray)cmowcgB755
CmoCh07G001180ClCG03G006990Watermelon (Charleston Gray)cmowcgB760
CmoCh07G001180CSPI01G21340Wild cucumber (PI 183967)cmocpiB844
CmoCh07G001180CSPI06G36130Wild cucumber (PI 183967)cmocpiB873
CmoCh07G001180Lsi02G008750Bottle gourd (USVL1VR-Ls)cmolsiB783
CmoCh07G001180Lsi01G001640Bottle gourd (USVL1VR-Ls)cmolsiB774
CmoCh07G001180Cp4.1LG19g06160Cucurbita pepo (Zucchini)cmocpeB817
CmoCh07G001180Cp4.1LG20g05090Cucurbita pepo (Zucchini)cmocpeB818
CmoCh07G001180MELO3C002723.2Melon (DHL92) v3.6.1cmomedB875
CmoCh07G001180MELO3C007148.2Melon (DHL92) v3.6.1cmomedB886
CmoCh07G001180CsaV3_6G051590Cucumber (Chinese Long) v3cmocucB1019
CmoCh07G001180CsaV3_1G032570Cucumber (Chinese Long) v3cmocucB0988
CmoCh07G001180Cla97C01G024400Watermelon (97103) v2cmowmbB849
CmoCh07G001180Cla97C03G058240Watermelon (97103) v2cmowmbB857
CmoCh07G001180Bhi03G000056Wax gourdcmowgoB1062
CmoCh07G001180CsGy6G035540Cucumber (Gy14) v2cgybcmoB843
CmoCh07G001180CsGy1G021030Cucumber (Gy14) v2cgybcmoB132
CmoCh07G001180Carg19930Silver-seed gourdcarcmoB1083
CmoCh07G001180Carg15019Silver-seed gourdcarcmoB0996
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh07G001180CmoCh13G005780Cucurbita moschata (Rifu)cmocmoB190
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh07G001180Cucurbita pepo (Zucchini)cmocpeB798
CmoCh07G001180Cucurbita pepo (Zucchini)cmocpeB801
CmoCh07G001180Silver-seed gourdcarcmoB0210
CmoCh07G001180Silver-seed gourdcarcmoB0745
CmoCh07G001180Wax gourdcmowgoB1074
CmoCh07G001180Cucurbita moschata (Rifu)cmocmoB350
CmoCh07G001180Cucurbita moschata (Rifu)cmocmoB459
CmoCh07G001180Cucurbita maxima (Rimu)cmacmoB429
CmoCh07G001180Cucurbita maxima (Rimu)cmacmoB672
CmoCh07G001180Cucumber (Chinese Long) v2cmocuB834
CmoCh07G001180Cucumber (Chinese Long) v2cmocuB865