CsGy1G020170 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G020170
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionU4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein
LocationChr1 : 18900413 .. 18903016 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCGACCGTGAACGAGACAGAGATAGAGGCCGCGACAGAGATAAAGATCGGGACCGTGATAGATACAAAGACCGGGAGCGAGACCGTGACCATCGGGAACGTGACCGGCGTAGGGATCGAGAAGATCGTGACCACCGTGAACGTGATCGGGACCGGGAACGCCGTAGGGATCAGGACGATCGTGACCGTGAAAGGGAGCGTGGCCGGAGTAAAAGGTCACTCACTCCCGACCGCTCAAGATCCCGCCGCTCTCGCACCCGCTCGCCGGACCGGCACCGGTCGCGGTCTCTTTCTCGTACTCCCGAGGACCGGCCATCTCGCCGCCGCCATCGTTCTCCTTCCCCAGATCATGCTCGGAAGCGTCATCGCCGGGATTTGACTGCGGATGACGAAAAGGAGCGGCAGAAAGCAGTTTCTGACTTTGTTGATGGCATTGCGAAAGAGCAGCACAAGCAGAAGAATAATAAAGACAACGTTGGTGGCGGAGAAGTAGTGGAGGAGGCCATGGCTGATGAAGATGAAATGGAGATGATGAAGAAATTAGGTATTCCCGTGGGTTTCGATTCGACCAAGGGCAAACCTGTCCCAGGTGCTGATGTGAGTGGCGTTAGGGTAGTTACCAAGAGGCAGCCTAGGCAGTACATGAATCGTCGTGGAGGGTTCAACAGGCCGTTGCCGGCCGAGCGCAGCCGGTAGCTAATATATTTGGCTAGGTCACTGAGGTTAGTCTATTGAACTGTTATTGGGATTTCTTAGCTCCGCCGTATTAAACTGTTGCAACAATTGAATAGCTTAGTCCACTGCCTTCTTCCTAAGGTTTGAGCAACAACTGCAACAAGAGTGTTTTTTGTATTTGTACAAAGATTAGAATGCTGTCTTCTTCCTGACATTCGGTTTTAGTAGTCCGATTAATGTTAATTCATTGTGCACTGTGTTTTTATGCTCCAGTTCCTAGTCACTTATAGTATTCTAGATGTTCAATGGGGTAGATGAGTATCTCGTCATTGTTGAGGATCTGACTAAAGTATTTGACATCTTTACTCCTGAAAATGCTCCTTAGAGAGAACACTAATTTCTTTGTCAATTTCATCTGTTTAAGATGGGTTTTAGACTAATGTTACCAGTAGTTAGTAGTTACTTAACGTTAGAGGTATGAACTTTTCACACATTTCTAAATATCACCAAACAGTTAGAACTTCATTGCCACCATTTTTTTTGTACAATGGTTGAAGGTCATACTCTGCCTAGTATTATCAAAGAGAACTTGAAGGACCCAAAATTTTGTTGAACGTATTTTTGGCATTTAGTTTTTGAAGTTATAATTGTAAAATTCTTAATCCAGTTGAGGAAACGTTGTGATGTACTTCTTCGGATGTGTTATAGGGCCGGGGCTTTTTGTATCAAAATATTGAGCTTATGTGTATGGTAGCTGGGCATGCGAATTTCTTGTGTGAGATAGTTTGTTTATGTTATTTGAGCCAACAGTTGATGAAAGTTCACAAGTGATGAATTTAGGAATATATTCAGACTTGCTGATATATGAAAATATGATTTAGTTTTTCATTAAAACAAAGAAAAGATTTAGGAGCTGTTGCCTGAAACTTACAAAGATGGTAAAATAATGAAACTGAGTATAGCTCTCCCGTGCTTCAGTGTAGCAACCAAGACTGACATTCTTCCTGAGATATCATTGAGCGGTGGGAGATAAATGCAGACCAGGCTATTGCAATGTGCTCGCATATTCTGGTAATAAAATCTTGTTACTGAATGTGTTTCCTGCTTAACCTGAAGTTTTGATATAGCTTGATTCGGATTTCAAATCCTCCCCTATCTTAGGGGACGCCTTGTGATTGTGAGTTCTTAGGGGTCCGCCTTGTGATTGTGAGTTCCAAAGACTTCCATCTGGTTTCTGAAATTAAAACTCACCCATATAGTTTGTGAGTGATTCAAGAGTTTGTGTGTAGATCCTTTAAGCACCCATTTAAACATAATCCTTTTTAGTTGCCAATTGCAAACACTCCTGCAATAACCTTTAGGTGCTTTGAAGTTTTCCGTTGATTTCATTTATCAATGAAATGTTTCTTTATCCCGAAAAAAAGTAACTAACAGCATAAACATCTGTGTGGGTGTCTGTTTATCGTCGCATTCTTCTAGATTGAAGTTTATTCTAGTATTTTATCAGTGCTGGGTTCCTTATAATAAAAAGTTATTTTTATGTACTCTTTATTTCATGTCAAGCTAGTTCCTTTCTTTTATTTAGTAATATTATCATTTACTCATGTCCGTTCAATGACACTAATTGAACCTGTTTTTGGTTTCTGCAGGATTTTGGTTTGCTTGACTTTGCTGGAGAGGCCAGATGGAAGTCTTTGGGCACAGTATTGTTTGTATGTAATATATATTCATGAAACCTTAGAATTCGAGTCGAGTTGAGTTAATTGATACTCGAAGAACGAGGGATATTTTTGGCTATTGTAGAAATTGGAGAATTTTCTATGTTGCTTATTTGTTTTCAGTAAAAAATGGATAGTGCTTAGATCAATTGAATTGGATTTGGTTCCTCCAAACTTGAGATTAGAGCTTTTCACAAAGGCCGGCTAA

mRNA sequence

ATGGTCGACCGTGAACGAGACAGAGATAGAGGCCGCGACAGAGATAAAGATCGGGACCGTGATAGATACAAAGACCGGGAGCGAGACCGTGACCATCGGGAACGTGACCGGCGTAGGGATCGAGAAGATCGTGACCACCGTGAACGTGATCGGGACCGGGAACGCCGTAGGGATCAGGACGATCGTGACCGTGAAAGGGAGCGTGGCCGGAGTAAAAGGTCACTCACTCCCGACCGCTCAAGATCCCGCCGCTCTCGCACCCGCTCGCCGGACCGGCACCGGTCGCGGTCTCTTTCTCGTACTCCCGAGGACCGGCCATCTCGCCGCCGCCATCGTTCTCCTTCCCCAGATCATGCTCGGAAGCGTCATCGCCGGGATTTGACTGCGGATGACGAAAAGGAGCGGCAGAAAGCAGTTTCTGACTTTGTTGATGGCATTGCGAAAGAGCAGCACAAGCAGAAGAATAATAAAGACAACGTTGGTGGCGGAGAAGTAGTGGAGGAGGCCATGGCTGATGAAGATGAAATGGAGATGATGAAGAAATTAGGTATTCCCGTGGGTTTCGATTCGACCAAGGGCAAACCTGTCCCAGGTGCTGATGTGAGTGGCGTTAGGGTAGTTACCAAGAGGCAGCCTAGGCAGTACATGAATCGTCGTGGAGGGTTCAACAGGCCGTTGCCGGCCGAGCGCAGCCGGATTTTGGTTTGCTTGACTTTGCTGGAGAGGCCAGATGGAAGTCTTTGGGCACAGTATTGTTTTAAAAAATGGATAGTGCTTAGATCAATTGAATTGGATTTGGTTCCTCCAAACTTGAGATTAGAGCTTTTCACAAAGGCCGGCTAA

Coding sequence (CDS)

ATGGTCGACCGTGAACGAGACAGAGATAGAGGCCGCGACAGAGATAAAGATCGGGACCGTGATAGATACAAAGACCGGGAGCGAGACCGTGACCATCGGGAACGTGACCGGCGTAGGGATCGAGAAGATCGTGACCACCGTGAACGTGATCGGGACCGGGAACGCCGTAGGGATCAGGACGATCGTGACCGTGAAAGGGAGCGTGGCCGGAGTAAAAGGTCACTCACTCCCGACCGCTCAAGATCCCGCCGCTCTCGCACCCGCTCGCCGGACCGGCACCGGTCGCGGTCTCTTTCTCGTACTCCCGAGGACCGGCCATCTCGCCGCCGCCATCGTTCTCCTTCCCCAGATCATGCTCGGAAGCGTCATCGCCGGGATTTGACTGCGGATGACGAAAAGGAGCGGCAGAAAGCAGTTTCTGACTTTGTTGATGGCATTGCGAAAGAGCAGCACAAGCAGAAGAATAATAAAGACAACGTTGGTGGCGGAGAAGTAGTGGAGGAGGCCATGGCTGATGAAGATGAAATGGAGATGATGAAGAAATTAGGTATTCCCGTGGGTTTCGATTCGACCAAGGGCAAACCTGTCCCAGGTGCTGATGTGAGTGGCGTTAGGGTAGTTACCAAGAGGCAGCCTAGGCAGTACATGAATCGTCGTGGAGGGTTCAACAGGCCGTTGCCGGCCGAGCGCAGCCGGATTTTGGTTTGCTTGACTTTGCTGGAGAGGCCAGATGGAAGTCTTTGGGCACAGTATTGTTTTAAAAAATGGATAGTGCTTAGATCAATTGAATTGGATTTGGTTCCTCCAAACTTGAGATTAGAGCTTTTCACAAAGGCCGGCTAA

Protein sequence

MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRDQDDRDRERERGRSKRSLTPDRSRSRRSRTRSPDRHRSRSLSRTPEDRPSRRRHRSPSPDHARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDNVGGGEVVEEAMADEDEMEMMKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERSRILVCLTLLERPDGSLWAQYCFKKWIVLRSIELDLVPPNLRLELFTKAG
Homology
[Close]
BLAST of CsGy1G020170 vs. NCBI nr
Match: XP_004146322.1 (PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Cucumis sativus] >KGN65465.1 hypothetical protein Csa_1G423230 [Cucumis sativus])

HSP 1 Score: 203.0 bits (515), Expect = 1.3e-48
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 131 DEKERQKAVSDFVDGIAKEQHKQKNNKDNVGGGEVVEEAMADEDEMEMMKKLGIPVGFDS 190
           DEKERQKAVSDFVDGIAKEQHKQKNNKDNVGGGEVVEEAMADEDEMEMMKKLGIPVGFDS
Sbjct: 131 DEKERQKAVSDFVDGIAKEQHKQKNNKDNVGGGEVVEEAMADEDEMEMMKKLGIPVGFDS 190

Query: 191 TKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERSR 233
           TKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERSR
Sbjct: 191 TKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERSR 232

[Close]
BLAST of CsGy1G020170 vs. NCBI nr
Match: XP_008453595.1 (PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Cucumis melo])

HSP 1 Score: 189.1 bits (479), Expect = 2.0e-44
Identity = 94/98 (95.92%), Postives = 96/98 (97.96%), Query Frame = 0 

Query: 135 RQKAVSDFVDGIAKEQHKQKNNKDNVGGGEVVEEAMADEDEMEMMKKLGIPVGFDSTKGK 194
           RQKAVSDFVDGIAKEQHKQKNNKDN G GEVVEEAMADEDE+EMMKKLGIPVGFDSTKGK
Sbjct: 135 RQKAVSDFVDGIAKEQHKQKNNKDNAGSGEVVEEAMADEDEIEMMKKLGIPVGFDSTKGK 194

Query: 195 PVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERSR 233
           PVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAER+R
Sbjct: 195 PVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 232

[Close]
BLAST of CsGy1G020170 vs. NCBI nr
Match: XP_023007065.1 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita maxima] >XP_023007073.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita maxima])

HSP 1 Score: 186.8 bits (473), Expect = 1.0e-43
Identity = 93/102 (91.18%), Postives = 97/102 (95.10%), Query Frame = 0 

Query: 131 DEKERQKAVSDFVDGIAKEQHKQKNNKDNVGGGEVVEEAMADEDEMEMMKKLGIPVGFDS 190
           D+KERQK VSDFVDGIAKEQHKQK NKD VGG EVVEEA+ADEDE+EMMKKLGIPVGFDS
Sbjct: 123 DDKERQKVVSDFVDGIAKEQHKQKKNKDRVGGEEVVEEAVADEDEIEMMKKLGIPVGFDS 182

Query: 191 TKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERSR 233
           TKGKPVPGADVSGVR VTKRQPRQYMNRRGGFNRPLPAER+R
Sbjct: 183 TKGKPVPGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 224

[Close]
BLAST of CsGy1G020170 vs. NCBI nr
Match: XP_023530476.1 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita pepo subsp. pepo] >XP_023530477.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita pepo subsp. pepo] >XP_023530478.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita pepo subsp. pepo] >XP_023530479.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 177.2 bits (448), Expect = 7.9e-41
Identity = 88/96 (91.67%), Postives = 91/96 (94.79%), Query Frame = 0 

Query: 137 KAVSDFVDGIAKEQHKQKNNKDNVGGGEVVEEAMADEDEMEMMKKLGIPVGFDSTKGKPV 196
           K VSDFVDGIAKEQHKQK NKD VGG EVVEEA+ADEDE+EMMKKLGIPVGFDSTKGKPV
Sbjct: 129 KVVSDFVDGIAKEQHKQKKNKDGVGGEEVVEEAVADEDEIEMMKKLGIPVGFDSTKGKPV 188

Query: 197 PGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERSR 233
           PGADVSGVR VTKRQPRQYMNRRGGFNRPLPAER+R
Sbjct: 189 PGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 224

[Close]
BLAST of CsGy1G020170 vs. NCBI nr
Match: XP_022930164.1 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita moschata] >XP_022930170.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita moschata] >XP_022930179.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita moschata])

HSP 1 Score: 172.2 bits (435), Expect = 2.5e-39
Identity = 85/92 (92.39%), Postives = 89/92 (96.74%), Query Frame = 0 

Query: 141 DFVDGIAKEQHKQKNNKDNVGGGEVVEEAMADEDEMEMMKKLGIPVGFDSTKGKPVPGAD 200
           DFVDGIAKEQHKQK NKD+VGG EVVEEA+ADEDE+EMMKKLGIPVGFDSTKGKPVPGAD
Sbjct: 131 DFVDGIAKEQHKQKKNKDSVGGEEVVEEAVADEDEIEMMKKLGIPVGFDSTKGKPVPGAD 190

Query: 201 VSGVRVVTKRQPRQYMNRRGGFNRPLPAERSR 233
           VSGVR VTKRQPRQYMNRRGGFNRPLPAER+R
Sbjct: 191 VSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 222

[Close]
BLAST of CsGy1G020170 vs. TAIR10
Match: AT5G57370.1 (unknown protein)

HSP 1 Score: 119.0 bits (297), Expect = 4.6e-27
Identity = 62/95 (65.26%), Postives = 74/95 (77.89%), Query Frame = 0 

Query: 138 AVSDFVDGIAKEQHKQKNNKDNVGGGEVVEEAMADEDEMEMMKKLGIPVGFDSTKGKPVP 197
           +V +    I K++ KQ ++  + GGGE  +E   D +E+EMMK LGIP GFDSTKGKPV 
Sbjct: 127 SVDENASTITKKKDKQPSDAADNGGGE--DEEGMDVNEIEMMKMLGIPTGFDSTKGKPVA 186

Query: 198 GADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERSR 233
           GADVSG+R VTKRQPRQYMNRRGGFNRPLPAER+R
Sbjct: 187 GADVSGIRAVTKRQPRQYMNRRGGFNRPLPAERNR 219

[Close]
BLAST of CsGy1G020170 vs. Swiss-Prot
Match: sp|Q6DDA4|SNR27_XENTR (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Xenopus tropicalis OX=8364 GN=snrnp27 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.3e-07
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 0 

Query: 173 EDEMEMMKKLGIPVGFDSTKGKPVPGA-DVSGVRVVTKRQPRQYMNRRGGFNRPL 227
           E+E+EMMK +G    FD++KGK V G+ +   + V  KR+ RQYMNR+GGFNRPL
Sbjct: 99  EEEIEMMKMMGFAT-FDTSKGKKVDGSVNAYAINVSQKRKYRQYMNRKGGFNRPL 152

[Close]
BLAST of CsGy1G020170 vs. Swiss-Prot
Match: sp|Q6GLZ8|SNR27_XENLA (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Xenopus laevis OX=8355 GN=snrnp27 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.0e-07
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 0 

Query: 173 EDEMEMMKKLGIPVGFDSTKGKPVPGA-DVSGVRVVTKRQPRQYMNRRGGFNRPL 227
           E+E+EMMK +G    FDS+KGK   G+ +   + V  KR+ RQYMNR+GGFNRPL
Sbjct: 101 EEEIEMMKLMGF-ASFDSSKGKKTDGSVNAYAINVSQKRKYRQYMNRKGGFNRPL 154

[Close]
BLAST of CsGy1G020170 vs. Swiss-Prot
Match: sp|Q8WVK2|SNR27_HUMAN (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP27 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.5e-06
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 0 

Query: 178 MMKKLGIPVGFDSTKGKPVPGA-DVSGVRVVTKRQPRQYMNRRGGFNRPL 227
           MMK +G    FDSTKGK V G+ +   + V  KR+ RQYMNR+GGFNRPL
Sbjct: 103 MMKLMGF-ASFDSTKGKKVDGSVNAYAINVSQKRKYRQYMNRKGGFNRPL 151

[Close]
BLAST of CsGy1G020170 vs. Swiss-Prot
Match: sp|Q8K194|SNR27_MOUSE (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Mus musculus OX=10090 GN=Snrnp27 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.5e-06
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 0 

Query: 178 MMKKLGIPVGFDSTKGKPVPGA-DVSGVRVVTKRQPRQYMNRRGGFNRPL 227
           MMK +G    FDSTKGK V G+ +   + V  KR+ RQYMNR+GGFNRPL
Sbjct: 103 MMKLMGF-ASFDSTKGKKVDGSVNAYAINVSQKRKYRQYMNRKGGFNRPL 151

[Close]
BLAST of CsGy1G020170 vs. Swiss-Prot
Match: sp|Q6DH74|SNR27_DANRE (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Danio rerio OX=7955 GN=snrnp27 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 7.4e-06
Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 0 

Query: 173 EDEMEMMKKLGIPVGFDSTKGKPVPGA-DVSGVRVVTKRQPRQYMNRRGGFNRPL 227
           E+E+EMMK +G    F+++KGK   G+     V V  KR+ RQYMNR+GGFNRPL
Sbjct: 101 EEEIEMMKLMGFG-SFETSKGKKKDGSIKAFAVNVSQKRKYRQYMNRKGGFNRPL 154

[Close]
BLAST of CsGy1G020170 vs. TrEMBL
Match: tr|A0A0A0LU61|A0A0A0LU61_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423230 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 8.9e-49
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 131 DEKERQKAVSDFVDGIAKEQHKQKNNKDNVGGGEVVEEAMADEDEMEMMKKLGIPVGFDS 190
           DEKERQKAVSDFVDGIAKEQHKQKNNKDNVGGGEVVEEAMADEDEMEMMKKLGIPVGFDS
Sbjct: 131 DEKERQKAVSDFVDGIAKEQHKQKNNKDNVGGGEVVEEAMADEDEMEMMKKLGIPVGFDS 190

Query: 191 TKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERSR 233
           TKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERSR
Sbjct: 191 TKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERSR 232

[Close]
BLAST of CsGy1G020170 vs. TrEMBL
Match: tr|A0A1S3BW27|A0A1S3BW27_CUCME (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Cucumis melo OX=3656 GN=LOC103494258 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.3e-44
Identity = 94/98 (95.92%), Postives = 96/98 (97.96%), Query Frame = 0 

Query: 135 RQKAVSDFVDGIAKEQHKQKNNKDNVGGGEVVEEAMADEDEMEMMKKLGIPVGFDSTKGK 194
           RQKAVSDFVDGIAKEQHKQKNNKDN G GEVVEEAMADEDE+EMMKKLGIPVGFDSTKGK
Sbjct: 135 RQKAVSDFVDGIAKEQHKQKNNKDNAGSGEVVEEAMADEDEIEMMKKLGIPVGFDSTKGK 194

Query: 195 PVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERSR 233
           PVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAER+R
Sbjct: 195 PVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 232

[Close]
BLAST of CsGy1G020170 vs. TrEMBL
Match: tr|A0A067KX07|A0A067KX07_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_08658 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 6.4e-31
Identity = 75/96 (78.12%), Postives = 82/96 (85.42%), Query Frame = 0 

Query: 138 AVSDFVDGIAKEQ-HKQKNNKDNVGGGEVVEEAMADEDEMEMMKKLGIPVGFDSTKGKPV 197
           AVSDFVDGIA+EQ  K  NN D  G G+ +E  + DEDE+EMMKK GIP+GFDSTKGKPV
Sbjct: 141 AVSDFVDGIAREQLEKIGNNNDGDGEGD-LEGGLVDEDEIEMMKKFGIPIGFDSTKGKPV 200

Query: 198 PGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERSR 233
           PGADVSGVRVVTKRQPRQYMNRRGGFNRPLP ER+R
Sbjct: 201 PGADVSGVRVVTKRQPRQYMNRRGGFNRPLPPERNR 235

[Close]
BLAST of CsGy1G020170 vs. TrEMBL
Match: tr|A0A0L9TEY8|A0A0L9TEY8_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan627s003600 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.1e-30
Identity = 77/97 (79.38%), Postives = 81/97 (83.51%), Query Frame = 0 

Query: 136 QKAVSDFVDGIAKEQHKQKNNKDNVGGGEVVEEAMADEDEMEMMKKLGIPVGFDSTKGKP 195
           +KAVSDFVDGIAKEQ  Q   KDN G      EA  +EDE+EMMK LGIPVGFDSTKGKP
Sbjct: 165 KKAVSDFVDGIAKEQ--QXKQKDNGG------EAEGNEDEVEMMKMLGIPVGFDSTKGKP 224

Query: 196 VPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERSR 233
           VPGADVSGVR VTKRQPRQYMNRRGGFNRPLPAER+R
Sbjct: 225 VPGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERNR 253

[Close]
BLAST of CsGy1G020170 vs. TrEMBL
Match: tr|A0A0S3R800|A0A0S3R800_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.01G479700 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.1e-30
Identity = 77/97 (79.38%), Postives = 81/97 (83.51%), Query Frame = 0 

Query: 136 QKAVSDFVDGIAKEQHKQKNNKDNVGGGEVVEEAMADEDEMEMMKKLGIPVGFDSTKGKP 195
           +KAVSDFVDGIAKEQ  Q   KDN G      EA  +EDE+EMMK LGIPVGFDSTKGKP
Sbjct: 147 KKAVSDFVDGIAKEQ--QXKQKDNGG------EAEGNEDEVEMMKMLGIPVGFDSTKGKP 206

Query: 196 VPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERSR 233
           VPGADVSGVR VTKRQPRQYMNRRGGFNRPLPAER+R
Sbjct: 207 VPGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERNR 235

The following BLAST results are available for this feature:
BLAST of CsGy1G020170 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004146322.11.3e-48100.00PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Cucumis sati... [more]
XP_008453595.12.0e-4495.92PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Cucumis melo... [more]
XP_023007065.11.0e-4391.18U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita maxima] ... [more]
XP_023530476.17.9e-4191.67U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita pepo sub... [more]
XP_022930164.12.5e-3992.39U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita moschata... [more]
BLAST of CsGy1G020170 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G57370.14.6e-2765.26unknown protein[more]
BLAST of CsGy1G020170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q6DDA4|SNR27_XENTR2.3e-0754.55U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Xenopus tropicalis OX... [more]
sp|Q6GLZ8|SNR27_XENLA3.0e-0754.55U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Xenopus laevis OX=835... [more]
sp|Q8WVK2|SNR27_HUMAN2.5e-0658.00U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Homo sapiens OX=9606 ... [more]
sp|Q8K194|SNR27_MOUSE2.5e-0658.00U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Mus musculus OX=10090... [more]
sp|Q6DH74|SNR27_DANRE7.4e-0652.73U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Danio rerio OX=7955 G... [more]
BLAST of CsGy1G020170 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LU61|A0A0A0LU61_CUCSA8.9e-49100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423230 PE=4 SV=1[more]
tr|A0A1S3BW27|A0A1S3BW27_CUCME1.3e-4495.92U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Cucumis melo OX=3656 ... [more]
tr|A0A067KX07|A0A067KX07_JATCU6.4e-3178.13Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_08658 PE=4 SV=1[more]
tr|A0A0L9TEY8|A0A0L9TEY8_PHAAN1.1e-3079.38Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan627s003600 P... [more]
tr|A0A0S3R800|A0A0S3R800_PHAAN1.1e-3079.38Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.01G... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0008380RNA splicing
Vocabulary: INTERPRO
TermDefinition
IPR013957SNRNP27
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008380 RNA splicing
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G020170.1CsGy1G020170.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013957U4/U6.U5 small nuclear ribonucleoprotein 27kDa proteinPFAMPF08648DUF1777coord: 25..226
e-value: 1.9E-31
score: 109.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..137
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..111
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 120..137
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..85
NoneNo IPR availablePANTHERPTHR31077FAMILY NOT NAMEDcoord: 33..229

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy1G020170Cla018838Watermelon (97103) v1cgybwmB080
CsGy1G020170Csa1G423230Cucumber (Chinese Long) v2cgybcuB002
CsGy1G020170MELO3C017454Melon (DHL92) v3.5.1cgybmeB039
CsGy1G020170CSPI01G20360Wild cucumber (PI 183967)cgybcpiB002
CsGy1G020170CmaCh10G003910Cucurbita maxima (Rimu)cgybcmaB015
CsGy1G020170CmaCh11G003860Cucurbita maxima (Rimu)cgybcmaB041
CsGy1G020170CmoCh11G003810Cucurbita moschata (Rifu)cgybcmoB038
CsGy1G020170CmoCh10G004200Cucurbita moschata (Rifu)cgybcmoB015
CsGy1G020170MELO3C017454.2Melon (DHL92) v3.6.1cgybmedB033
CsGy1G020170CsaV3_1G031680Cucumber (Chinese Long) v3cgybcucB001
CsGy1G020170Cla97C06G122890Watermelon (97103) v2cgybwmbB064
CsGy1G020170Bhi02G000560Wax gourdcgybwgoB095
CsGy1G020170Carg15237Silver-seed gourdcarcgybB0779
CsGy1G020170Carg09032Silver-seed gourdcarcgybB0591
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy1G020170Watermelon (97103) v2cgybwmbB023
CsGy1G020170Wax gourdcgybwgoB007
CsGy1G020170Cucumber (Gy14) v2cgybcgybB009
CsGy1G020170Cucurbita maxima (Rimu)cgybcmaB056
CsGy1G020170Cucurbita maxima (Rimu)cgybcmaB135
CsGy1G020170Cucurbita moschata (Rifu)cgybcmoB052
CsGy1G020170Cucurbita moschata (Rifu)cgybcmoB126
CsGy1G020170Cucurbita pepo (Zucchini)cgybcpeB032
CsGy1G020170Cucurbita pepo (Zucchini)cgybcpeB042
CsGy1G020170Cucurbita pepo (Zucchini)cgybcpeB110
CsGy1G020170Cucurbita pepo (Zucchini)cgybcpeB145
CsGy1G020170Cucumber (Chinese Long) v2cgybcuB018
CsGy1G020170Bottle gourd (USVL1VR-Ls)cgyblsiB009
CsGy1G020170Bottle gourd (USVL1VR-Ls)cgyblsiB056
CsGy1G020170Melon (DHL92) v3.5.1cgybmeB067
CsGy1G020170Melon (DHL92) v3.6.1cgybmedB063
CsGy1G020170Watermelon (Charleston Gray)cgybwcgB009
CsGy1G020170Watermelon (Charleston Gray)cgybwcgB064
CsGy1G020170Watermelon (97103) v1cgybwmB076
CsGy1G020170Wild cucumber (PI 183967)cgybcpiB016
CsGy1G020170Silver-seed gourdcarcgybB0059
CsGy1G020170Cucumber (Chinese Long) v3cgybcucB016