CmaCh10G003910 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh10G003910
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein
Location	Cma_Chr10 : 1815460 .. 1816149 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCGACCGTGAACGAGATCGAGACAGAGGACGCGACAGAGATAAAGATCGGGACCGTGACAGGTATATAGACCGGGAGCGAGACCGTGACTACCGTGAACGTGACCGGCGTAGGGATCGAGAAGATCGTGATCGGGACCGGGAACGGCGTAGGGAGAAGGACGACCGTGACCATGAACGGGAGCGCGGCAGGGGTAAAAGGTCTCATACTCCTGAACGCCCCAGATCCCGCCACACACGCTCTCGCACCCGCTCGCCGGACCGGCACCGGTCGCGGTCTCTTTCTCGTACCCCTGAGGATCGATCCCTTCGCCGCCGGCATCGCTCACCCTCCCCGGATCATGTTAGGAAGCGTCATCGCCGGGATTTGACTGCGGACGATGAAAAGGACCGGCAGAAAGCAGTGTCTGACTTCGTCGAAGGCATTGCGAAGGAGCAGCACAAACAAAAGAATAATAAAGATAGCGTTGGTGGCGGAGAATCAGTGGAGGAGGCCATGGCTGATGAGGATGAAATTGAGATGATGAAGAAATTAGGTATTCCCGTGGGTTTCGATTCGACCAAGGGAAAGCCTGTTGCCGGTGCTGATGTGAGTGGCGTTAGGGCAGTGACCAAGAGACAGCCTAGGCAGTACATGAATCGTCGTGGCGGGTTCAACCGGCCGTTGCCGGCTGAGCGGACCCGGTAG

mRNA sequence

ATGGTCGACCGTGAACGAGATCGAGACAGAGGACGCGACAGAGATAAAGATCGGGACCGTGACAGGTATATAGACCGGGAGCGAGACCGTGACTACCGTGAACGTGACCGGCGTAGGGATCGAGAAGATCGTGATCGGGACCGGGAACGGCGTAGGGAGAAGGACGACCGTGACCATGAACGGGAGCGCGGCAGGGGTAAAAGGTCTCATACTCCTGAACGCCCCAGATCCCGCCACACACGCTCTCGCACCCGCTCGCCGGACCGGCACCGGTCGCGGTCTCTTTCTCGTACCCCTGAGGATCGATCCCTTCGCCGCCGGCATCGCTCACCCTCCCCGGATCATGTTAGGAAGCGTCATCGCCGGGATTTGACTGCGGACGATGAAAAGGACCGGCAGAAAGCAGTGTCTGACTTCGTCGAAGGCATTGCGAAGGAGCAGCACAAACAAAAGAATAATAAAGATAGCGTTGGTGGCGGAGAATCAGTGGAGGAGGCCATGGCTGATGAGGATGAAATTGAGATGATGAAGAAATTAGGTATTCCCGTGGGTTTCGATTCGACCAAGGGAAAGCCTGTTGCCGGTGCTGATGTGAGTGGCGTTAGGGCAGTGACCAAGAGACAGCCTAGGCAGTACATGAATCGTCGTGGCGGGTTCAACCGGCCGTTGCCGGCTGAGCGGACCCGGTAG

Coding sequence (CDS)

ATGGTCGACCGTGAACGAGATCGAGACAGAGGACGCGACAGAGATAAAGATCGGGACCGTGACAGGTATATAGACCGGGAGCGAGACCGTGACTACCGTGAACGTGACCGGCGTAGGGATCGAGAAGATCGTGATCGGGACCGGGAACGGCGTAGGGAGAAGGACGACCGTGACCATGAACGGGAGCGCGGCAGGGGTAAAAGGTCTCATACTCCTGAACGCCCCAGATCCCGCCACACACGCTCTCGCACCCGCTCGCCGGACCGGCACCGGTCGCGGTCTCTTTCTCGTACCCCTGAGGATCGATCCCTTCGCCGCCGGCATCGCTCACCCTCCCCGGATCATGTTAGGAAGCGTCATCGCCGGGATTTGACTGCGGACGATGAAAAGGACCGGCAGAAAGCAGTGTCTGACTTCGTCGAAGGCATTGCGAAGGAGCAGCACAAACAAAAGAATAATAAAGATAGCGTTGGTGGCGGAGAATCAGTGGAGGAGGCCATGGCTGATGAGGATGAAATTGAGATGATGAAGAAATTAGGTATTCCCGTGGGTTTCGATTCGACCAAGGGAAAGCCTGTTGCCGGTGCTGATGTGAGTGGCGTTAGGGCAGTGACCAAGAGACAGCCTAGGCAGTACATGAATCGTCGTGGCGGGTTCAACCGGCCGTTGCCGGCTGAGCGGACCCGGTAG

Protein sequence

MVDRERDRDRGRDRDKDRDRDRYIDRERDRDYRERDRRRDREDRDRDRERRREKDDRDHERERGRGKRSHTPERPRSRHTRSRTRSPDRHRSRSLSRTPEDRSLRRRHRSPSPDHVRKRHRRDLTADDEKDRQKAVSDFVEGIAKEQHKQKNNKDSVGGGESVEEAMADEDEIEMMKKLGIPVGFDSTKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR

Homology

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BLAST of CmaCh10G003910 vs. Swiss-Prot
Match: SNR27_MOUSE (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Mus musculus GN=Snrnp27 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.8e-10
Identity = 76/183 (41.53%), Postives = 94/183 (51.37%), Query Frame = 1


Query: 44  RDRDRERRREKDDRDHERERGRGKRSHTPERPRSRHTRSRTRSPDRHRSRSLSRTPEDRS 103
           R R R  RRE+          R  RS + +R R R  RSR+R  DR RSR  SR+P  R 
Sbjct: 3   RSRSRSPRRER----------RRSRSTSRDRERRRRERSRSRERDRRRSR--SRSPHRRR 62

Query: 104 LR--RRHRSPSPDHVRKRHRRDLTADDEKDRQKAVSDFVEGIAKEQHKQKNNKDSVGGGE 163
            R  RRHRS SP   R + RR    D+EK   K +        K + +Q   +D  G   
Sbjct: 63  SRSPRRHRSTSPSPSRLKERR----DEEKKETKEI--------KNKERQITEEDLEG--- 122

Query: 164 SVEEAMADEDEIEMMKKLGIPVGFDSTKGKPVAGA-DVSGVRAVTKRQPRQYMNRRGGFN 223
                   E+EIEMMK +G    FDSTKGK V G+ +   +    KR+ RQYMNR+GGFN
Sbjct: 123 ------KTEEEIEMMKLMGF-ASFDSTKGKKVDGSVNAYAINVSQKRKYRQYMNRKGGFN 151

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BLAST of CmaCh10G003910 vs. Swiss-Prot
Match: SNR27_HUMAN (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Homo sapiens GN=SNRNP27 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.2e-09
Identity = 77/183 (42.08%), Postives = 93/183 (50.82%), Query Frame = 1


Query: 44  RDRDRERRREKDDRDHERERGRGKRSHTPERPRSRHTRSRTRSPDRHRSRSLSRTPEDRS 103
           R R R  RRE+          R  RS + ER R R  RSR+R  DR RSR  SR+P  R 
Sbjct: 3   RSRSRSPRRER----------RRSRSTSRERERRRRERSRSRERDRRRSR--SRSPHRRR 62

Query: 104 LR--RRHRSPSPDHVRKRHRRDLTADDEKDRQKAVSDFVEGIAKEQHKQKNNKDSVGGGE 163
            R  RRHRS SP   R + RR    D+EK   K          K + +Q   +D  G   
Sbjct: 63  SRSPRRHRSTSPSPSRLKERR----DEEKKETKE--------TKSKERQITEEDLEG--- 122

Query: 164 SVEEAMADEDEIEMMKKLGIPVGFDSTKGKPVAGA-DVSGVRAVTKRQPRQYMNRRGGFN 223
                   E+EIEMMK +G    FDSTKGK V G+ +   +    KR+ RQYMNR+GGFN
Sbjct: 123 ------KTEEEIEMMKLMGF-ASFDSTKGKKVDGSVNAYAINVSQKRKYRQYMNRKGGFN 151

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BLAST of CmaCh10G003910 vs. Swiss-Prot
Match: SNR27_XENLA (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Xenopus laevis GN=snrnp27 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-09
Identity = 56/153 (36.60%), Postives = 78/153 (50.98%), Query Frame = 1


Query: 93  RSLSRTPEDRSLRRRHRSPSPDHVRKRHRRDLTADDEKDRQKA-------------VSDF 152
           RS SR+PE R  RRR RS S +  R+R  R  + +  + R ++              S  
Sbjct: 3   RSRSRSPERRRERRRSRSASRERERRRRERSRSRERRRSRSRSPHRRRSRSPRRHRSSSI 62

Query: 153 VEGIAKEQH--KQKNNKDSVGGGESVEEAMAD------EDEIEMMKKLGIPVGFDSTKGK 212
                K++    +K  K+S GGG    +  A+      E+EIEMMK +G    FDS+KGK
Sbjct: 63  SPSRLKDRRDDDKKEPKESKGGGSKERQLAAEDLEGKTEEEIEMMKLMGF-ASFDSSKGK 122

Query: 213 PVAGA-DVSGVRAVTKRQPRQYMNRRGGFNRPL 224
              G+ +   +    KR+ RQYMNR+GGFNRPL
Sbjct: 123 KTDGSVNAYAINVSQKRKYRQYMNRKGGFNRPL 154

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BLAST of CmaCh10G003910 vs. Swiss-Prot
Match: SNR27_DANRE (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Danio rerio GN=snrnp27 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 9.8e-09
Identity = 69/170 (40.59%), Postives = 89/170 (52.35%), Query Frame = 1


Query: 57  RDHERERGRGKRSHTPERPRSRHTRSRTRSPDRHRSRSLSRTPEDRSLR--RRHRSPSPD 116
           R   R   R  RS + +R R R  R R+RS DR R RS SR+P  R  R  RRHRS S  
Sbjct: 7   RTPPRRERRRSRSSSRDRERRRRERERSRSRDRDRRRSRSRSPHRRRSRSPRRHRSSSLS 66

Query: 117 HVRKRHRRDLTADDEKDRQKAVSDFVEGIAKEQHKQKNNKDSVGGGESVEEAMADEDEIE 176
            +R++ RRD   DD KD ++  +  V  I+ E  + K                  E+EIE
Sbjct: 67  PLRQKDRRD---DDRKDVKEKPAK-VHQISAEDMQGKT-----------------EEEIE 126

Query: 177 MMKKLGIPVGFDSTKGKPVAGA-DVSGVRAVTKRQPRQYMNRRGGFNRPL 224
           MMK +G    F+++KGK   G+     V    KR+ RQYMNR+GGFNRPL
Sbjct: 127 MMKLMGFG-SFETSKGKKKDGSIKAFAVNVSQKRKYRQYMNRKGGFNRPL 154

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BLAST of CmaCh10G003910 vs. Swiss-Prot
Match: SNR27_XENTR (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Xenopus tropicalis GN=snrnp27 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 9.8e-09
Identity = 73/183 (39.89%), Postives = 94/183 (51.37%), Query Frame = 1


Query: 44  RDRDRERRREKDDRDHERERGRGKRSHTPERPRSRHTRSRTRSPDRHRSRSLSRTPEDRS 103
           R R  ERRRE+            +RS +  R R R  R R+RS +R RSR  SR+P  R 
Sbjct: 5   RSRSPERRRER------------RRSRSASRERERRRRERSRSRERRRSR--SRSPHRRR 64

Query: 104 LR--RRHRSPSPDHVRKRHRRDLTADDEKDRQKAVSDFVEGIAKEQHKQKNNKDSVGGGE 163
            R  RRHRS S    R + RRD   DD+KD +++       IA E  + K          
Sbjct: 65  SRSPRRHRSSSISPGRLKDRRD---DDKKDSKESKGAKERQIAAEDLEGKT--------- 124

Query: 164 SVEEAMADEDEIEMMKKLGIPVGFDSTKGKPVAGA-DVSGVRAVTKRQPRQYMNRRGGFN 223
                   E+EIEMMK +G    FD++KGK V G+ +   +    KR+ RQYMNR+GGFN
Sbjct: 125 --------EEEIEMMKMMGFAT-FDTSKGKKVDGSVNAYAINVSQKRKYRQYMNRKGGFN 152

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BLAST of CmaCh10G003910 vs. TrEMBL
Match: A0A0A0LU61_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G423230 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 2.2e-92
Identity = 207/234 (88.46%), Postives = 216/234 (92.31%), Query Frame = 1


Query: 1   MVDRERDRDRGRDRDKDRDRDRYIDRERDRDYRERDRRRDREDRD-----RDRERRREKD 60
           MVDRERDRDRGRDRDKDRDRDRY DRERDRD+RERDRRRDREDRD     RDRERRR++D
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRDQD 60

Query: 61  DRDHERERGRGKRSHTPERPRSRHTRSRTRSPDRHRSRSLSRTPEDRSLRRRHRSPSPDH 120
           DRD ERERGR KRS TP+R RSR  RSRTRSPDRHRSRSLSRTPEDR  RRRHRSPSPDH
Sbjct: 61  DRDRERERGRSKRSLTPDRSRSR--RSRTRSPDRHRSRSLSRTPEDRPSRRRHRSPSPDH 120

Query: 121 VRKRHRRDLTADDEKDRQKAVSDFVEGIAKEQHKQKNNKDSVGGGESVEEAMADEDEIEM 180
            RKRHRRDLTADDEK+RQKAVSDFV+GIAKEQHKQKNNKD+VGGGE VEEAMADEDE+EM
Sbjct: 121 ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDNVGGGEVVEEAMADEDEMEM 180

Query: 181 MKKLGIPVGFDSTKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 230
           MKKLGIPVGFDSTKGKPV GADVSGVR VTKRQPRQYMNRRGGFNRPLPAER+R
Sbjct: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERSR 232

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BLAST of CmaCh10G003910 vs. TrEMBL
Match: M5XT32_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011504mg PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 7.0e-54
Identity = 153/237 (64.56%), Postives = 172/237 (72.57%), Query Frame = 1


Query: 1   MVDRERDRDRGRDRDKDRDRDRYIDRERDRDYRERDRRRDREDRDRDRERRREKDDRDHE 60
           M DRERDRDR R+R++DRDRDR             +RRRDR+DRDRDR+R          
Sbjct: 1   MGDRERDRDRDRERNRDRDRDR-------------ERRRDRDDRDRDRDR---------- 60

Query: 61  RERGRGKRSHTPERPRSRHTRSRTRSPDRHRSR----SLSRTPEDRSLRRRH---RSPSP 120
            +R R KRS TPER R RHTRSRTRSPDR+RSR    S SR+P+DRS RRRH   RSPS 
Sbjct: 61  -DRVRSKRSRTPERTRPRHTRSRTRSPDRYRSRTRSVSRSRSPDDRSHRRRHHHNRSPSA 120

Query: 121 DHVRKRHRRDLTADDEKDRQKA-VSDFVEGIAKEQHKQKNNKDSVGGGESVEEAMADEDE 180
           +  RKR RR+ TA+DE++RQKA V+DFVEGIAKEQ  Q+      GG E +     DEDE
Sbjct: 121 E-ARKRQRREPTAEDERERQKAAVADFVEGIAKEQKTQQKQSSDGGGDEGL-----DEDE 180

Query: 181 IEMMKKLGIPVGFDSTKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 230
           IEMMKK GIP GFDSTKGKPV GADVSG+RAVTKRQPRQYMNRRGGFNRPLPAER R
Sbjct: 181 IEMMKKFGIPTGFDSTKGKPVPGADVSGIRAVTKRQPRQYMNRRGGFNRPLPAERNR 207

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BLAST of CmaCh10G003910 vs. TrEMBL
Match: W9QVX9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_016764 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.1e-51
Identity = 142/211 (67.30%), Postives = 162/211 (76.78%), Query Frame = 1


Query: 36  DRRRDRE-DRDRDRERRREKDDRDHERERGRGKRSHTPERPRSRHTRSRTRSPDRHRSRS 95
           DR RDR+ DRDRDRERRR++DDRD    RGR KRSHTP+R RSRH RS    PDR+RSR+
Sbjct: 3   DRERDRDRDRDRDRERRRDRDDRD----RGRSKRSHTPDRTRSRHPRS----PDRYRSRT 62

Query: 96  LSRT---PEDRSLRRRH---RSPSPDHVRKRHRRDLTADDEKDRQKAVSDFVEGIAKEQH 155
           LSR+   P+DRS RRRH   R+PSP+  RKRHRRD TADDE++RQK VSDFV+ IAKEQ 
Sbjct: 63  LSRSRSPPDDRSHRRRHHHHRTPSPES-RKRHRRDSTADDERERQKVVSDFVDRIAKEQQ 122

Query: 156 KQKNNKDSVG----------GGESVEEAMADEDEIEMMKKLGIPVGFDSTKGKPVAGADV 215
           KQK   D+            GG   EE   +EDE+EMM+ +GIP+GFDSTKGK VAGADV
Sbjct: 123 KQKRQSDNGSEGGEGEREEEGGGGGEEGGMNEDEMEMMRMMGIPMGFDSTKGKQVAGADV 182

Query: 216 SGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 230
           SGV+AVTKRQPRQYMNRRGGFNRPLPAERTR
Sbjct: 183 SGVKAVTKRQPRQYMNRRGGFNRPLPAERTR 204

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BLAST of CmaCh10G003910 vs. TrEMBL
Match: A0A0S3R800_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G479700 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.4e-49
Identity = 154/244 (63.11%), Postives = 181/244 (74.18%), Query Frame = 1


Query: 1   MVDRERDRDRGRDRDKDRDRDRYID-----RERDRDYRERDRRRDREDRDR-----DRER 60
           M DRER+R+R RDR +DR+R R  D     R+R+RD  +RDR RD+ DRDR     DR+R
Sbjct: 1   MTDRERERERDRDRTRDRERKRRRDKDDRDRDRERDKGDRDRERDKGDRDRERDKGDRDR 60

Query: 61  RREKDDRDHERERGRGKRSHTPERPRSR-HT-RSRTRSPDRHRSR-SLSRTPEDRSLRRR 120
            R+KDDRD ERER +  R    ER R R H+ RSR+RSPDR RSR + S +P +RS RRR
Sbjct: 61  ERDKDDRDREREREKDDRDRERERDRDRVHSKRSRSRSPDRGRSRHARSPSPSERSHRRR 120

Query: 121 H-RSPSPDHVRKRHRRDLTADDEKDRQKAVSDFVEGIAKEQH-KQKNNKDSVGGGESVEE 180
           H R+P+PD  RKRHRR+   ++ K+ +KAVSDFV+GIAKEQ  KQK+N    GG     E
Sbjct: 121 HHRTPTPDQPRKRHRRESVEEEHKETKKAVSDFVDGIAKEQQQKQKDN----GG-----E 180

Query: 181 AMADEDEIEMMKKLGIPVGFDSTKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPA 230
           A  +EDE+EMMK LGIPVGFDSTKGKPV GADVSGVRAVTKRQPRQYMNRRGGFNRPLPA
Sbjct: 181 AEGNEDEVEMMKMLGIPVGFDSTKGKPVPGADVSGVRAVTKRQPRQYMNRRGGFNRPLPA 235

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BLAST of CmaCh10G003910 vs. TrEMBL
Match: A0A061GRR3_THECC (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein isoform 1 OS=Theobroma cacao GN=TCM_039191 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.1e-48
Identity = 146/225 (64.89%), Postives = 165/225 (73.33%), Query Frame = 1


Query: 13  DRDKDRDRDRYIDRERDRDYRERDRRRDREDRDRDRERRREKDDRDHERERGRGKRSHTP 72
           DRD  RDRDR  +R+RDRD RER+RRRDREDR+RDR+R           ER R KRS TP
Sbjct: 3   DRDWPRDRDRERERDRDRD-RERERRRDREDRERDRDR-----------ERTRSKRSRTP 62

Query: 73  ERPRSRHTRSRTRSPDRH----RSRSLSRTPE---DRSLRRRHRSPSPDHVRKRHRRDL- 132
           ER RSRHTRSRTRSPDR+    RSRS +R+PE    R  R RHR+PS +  RKRHR +  
Sbjct: 63  ERTRSRHTRSRTRSPDRNRYRSRSRSHTRSPERSSHRHHRHRHRTPSAEPPRKRHRHESE 122

Query: 133 TADDEKDRQKAVSDFVEGIAKEQHKQKNNKDSVGGGESVEEAMADEDEIEMMKKLGIPVG 192
             D EKDRQKAVSDFV+ IAKEQ ++K N  +    E+      +EDE+EMMKKLGIPV 
Sbjct: 123 ERDKEKDRQKAVSDFVDEIAKEQQQKKENNSN----ENENGDGGEEDEMEMMKKLGIPVD 182

Query: 193 FDSTKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 230
           FDSTKGK V GAD+SGVRAVTKRQPRQYMNRRGGFNRPLPAER R
Sbjct: 183 FDSTKGKHVPGADISGVRAVTKRQPRQYMNRRGGFNRPLPAERNR 211

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BLAST of CmaCh10G003910 vs. TAIR10
Match: AT5G57370.1 (AT5G57370.1 unknown protein)

HSP 1 Score: 153.7 bits (387), Expect = 1.4e-37
Identity = 132/236 (55.93%), Postives = 160/236 (67.80%), Query Frame = 1


Query: 5   ERDRDRGRDRDKDRDRDRYIDRERDRDYRERDRRRDREDRDRDRERRREKDDRDHERERG 64
           ERDR R R+RDKDR+ DR             DRRR R+DRDRDR+R RE+D R+ +R+RG
Sbjct: 3   ERDR-RERERDKDREPDR-------------DRRRGRDDRDRDRDRDRERD-RERDRDRG 62

Query: 65  -RGKRSHTPERPRSRHTRSR-TRSPDRHRSRSLSRTPE---DRSLRRRHRSPSPDHVRKR 124
            R K+S +  R    H R+R  RSP+R+RSRS S   +   DR    R RSPSPD   ++
Sbjct: 63  LRNKKSRS--RTPDHHARARHVRSPERYRSRSRSIDRDRDRDRQRHHRRRSPSPDAPSRK 122

Query: 125 HRRDLTADDEKDR--QKAVSDFVEG----IAKEQHKQKNNKDSVGGGESVEEAMADEDEI 184
             R  + DDEK+R  ++ V+D V+     I K++ KQ ++    GGGE  EE M D +EI
Sbjct: 123 RPRQGSVDDEKERNRKRVVTDSVDENASTITKKKDKQPSDAADNGGGED-EEGM-DVNEI 182

Query: 185 EMMKKLGIPVGFDSTKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 230
           EMMK LGIP GFDSTKGKPVAGADVSG+RAVTKRQPRQYMNRRGGFNRPLPAER R
Sbjct: 183 EMMKMLGIPTGFDSTKGKPVAGADVSGIRAVTKRQPRQYMNRRGGFNRPLPAERNR 219

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BLAST of CmaCh10G003910 vs. NCBI nr
Match: gi|659107269|ref|XP_008453595.1| (PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Cucumis melo])

HSP 1 Score: 350.5 bits (898), Expect = 2.2e-93
Identity = 209/234 (89.32%), Postives = 215/234 (91.88%), Query Frame = 1


Query: 1   MVDRERDRDRGRDRDKDRDRDRYIDRERDRDYRERDRRRDREDRD-----RDRERRREKD 60
           MVDRERDRDRGRDRDKDRDRDRY DRERDRD+RERDRRRDREDRD     RDRERRR+ D
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRDLD 60

Query: 61  DRDHERERGRGKRSHTPERPRSRHTRSRTRSPDRHRSRSLSRTPEDRSLRRRHRSPSPDH 120
           DRD ERERGR KRSHTP+R RSR  RSRTRSPDRHRSRSLSRTPEDRS RRRHRSPSPDH
Sbjct: 61  DRDRERERGRSKRSHTPDRSRSR--RSRTRSPDRHRSRSLSRTPEDRSSRRRHRSPSPDH 120

Query: 121 VRKRHRRDLTADDEKDRQKAVSDFVEGIAKEQHKQKNNKDSVGGGESVEEAMADEDEIEM 180
            RKRHRRDLTADDEK+RQKAVSDFV+GIAKEQHKQKNNKD+ G GE VEEAMADEDEIEM
Sbjct: 121 ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDNAGSGEVVEEAMADEDEIEM 180

Query: 181 MKKLGIPVGFDSTKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 230
           MKKLGIPVGFDSTKGKPV GADVSGVR VTKRQPRQYMNRRGGFNRPLPAERTR
Sbjct: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 232

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BLAST of CmaCh10G003910 vs. NCBI nr
Match: gi|449457171|ref|XP_004146322.1| (PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Cucumis sativus])

HSP 1 Score: 346.7 bits (888), Expect = 3.2e-92
Identity = 207/234 (88.46%), Postives = 216/234 (92.31%), Query Frame = 1


Query: 1   MVDRERDRDRGRDRDKDRDRDRYIDRERDRDYRERDRRRDREDRD-----RDRERRREKD 60
           MVDRERDRDRGRDRDKDRDRDRY DRERDRD+RERDRRRDREDRD     RDRERRR++D
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRDQD 60

Query: 61  DRDHERERGRGKRSHTPERPRSRHTRSRTRSPDRHRSRSLSRTPEDRSLRRRHRSPSPDH 120
           DRD ERERGR KRS TP+R RSR  RSRTRSPDRHRSRSLSRTPEDR  RRRHRSPSPDH
Sbjct: 61  DRDRERERGRSKRSLTPDRSRSR--RSRTRSPDRHRSRSLSRTPEDRPSRRRHRSPSPDH 120

Query: 121 VRKRHRRDLTADDEKDRQKAVSDFVEGIAKEQHKQKNNKDSVGGGESVEEAMADEDEIEM 180
            RKRHRRDLTADDEK+RQKAVSDFV+GIAKEQHKQKNNKD+VGGGE VEEAMADEDE+EM
Sbjct: 121 ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDNVGGGEVVEEAMADEDEMEM 180

Query: 181 MKKLGIPVGFDSTKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 230
           MKKLGIPVGFDSTKGKPV GADVSGVR VTKRQPRQYMNRRGGFNRPLPAER+R
Sbjct: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERSR 232

[Close]

BLAST of CmaCh10G003910 vs. NCBI nr
Match: gi|1009105406|ref|XP_015893702.1| (PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Ziziphus jujuba])

HSP 1 Score: 231.1 bits (588), Expect = 1.9e-57
Identity = 153/234 (65.38%), Postives = 179/234 (76.50%), Query Frame = 1


Query: 1   MVDRERDRDRGRDRDKDRDRDRYIDRERDRDYRERDRRRDREDRDRDRERRREKDDRDHE 60
           M DR+RDRDR RDRD+DRDRDR             +RRRDR++R+R+RER         E
Sbjct: 18  MGDRDRDRDRARDRDRDRDRDR-------------ERRRDRDERERERER---------E 77

Query: 61  RERGRGKRSHTPERPRSRHTRSRTRSPDRHRSRSLSRT--PEDRSLRRRH---RSPSPDH 120
           R+R R KRS TPER RSRHTRSRTRSP+ HRSRSLSR+  P+DRS RRRH   R+PSP+ 
Sbjct: 78  RDRVRSKRSRTPERTRSRHTRSRTRSPELHRSRSLSRSRSPDDRSHRRRHHHHRTPSPEP 137

Query: 121 VRKRHRRDLTADDEKDRQKAVSDFVEGIAKEQHKQKNNKDSVGGGESVEEAMADEDEIEM 180
             KR RR+ TA+DE++RQK VS+FV+GIAKE  KQ+  ++S G GE  +E   +EDEIEM
Sbjct: 138 W-KRQRRESTAEDERERQKVVSEFVDGIAKEHQKQQQKQNSTGNGEGEDEEGLNEDEIEM 197

Query: 181 MKKLGIPVGFDSTKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 230
           MKK+GIP+GFDSTKGK V GADVSGVRAVTKRQPRQYMNRRGGFNRPLPAER R
Sbjct: 198 MKKMGIPMGFDSTKGKQVPGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERNR 228

[Close]

BLAST of CmaCh10G003910 vs. NCBI nr
Match: gi|470120729|ref|XP_004296443.1| (PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Fragaria vesca subsp. vesca])

HSP 1 Score: 230.7 bits (587), Expect = 2.5e-57
Identity = 161/234 (68.80%), Postives = 177/234 (75.64%), Query Frame = 1


Query: 1   MVDRERDRDRGRDRDKDRDRDRYIDRERDRDYRERDRRRDREDRDRDRERRREKDDRDHE 60
           M DRER+RDR RDR++ RDRDR           +RDRRRDR+DRDRDR+R         +
Sbjct: 1   MADRERERDRDRDRERIRDRDR-----------DRDRRRDRDDRDRDRDR---------D 60

Query: 61  RERGRGKRSHTPERPRSRHTRSRTRSPDRHRSRSLSR--TPEDRSLRRRH---RSPSPDH 120
           R+R R KRS TPER R+RHTRSRTRSPD++ SRSLSR  TPEDRS RRRH   RSPSP+ 
Sbjct: 61  RDRVRSKRSRTPERTRARHTRSRTRSPDQYHSRSLSRSRTPEDRSHRRRHHHHRSPSPES 120

Query: 121 VRKRHRRDLTADDEKDRQKAVSDFVEGIAKEQHKQKNNKDSVGGGESVEEAMADEDEIEM 180
            RKR RR+ T + EKDRQKAVS+FVEG+AKEQ    NN    GGG       ADEDEIEM
Sbjct: 121 -RKRARREPTVEAEKDRQKAVSEFVEGVAKEQ---PNNGGGEGGG-------ADEDEIEM 180

Query: 181 MKKLGIPVGFDSTKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 230
           MKKLGIPVGFDSTKGKPV GADVSGVRAVTKRQPRQYMNRRGGFNRPLPAER R
Sbjct: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERNR 203

[Close]

BLAST of CmaCh10G003910 vs. NCBI nr
Match: gi|645234349|ref|XP_008223770.1| (PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Prunus mume])

HSP 1 Score: 224.2 bits (570), Expect = 2.4e-55
Identity = 156/237 (65.82%), Postives = 175/237 (73.84%), Query Frame = 1


Query: 1   MVDRERDRDRGRDRDKDRDRDRYIDRERDRDYRERDRRRDREDRDRDRERRREKDDRDHE 60
           M DRERDRDR RDR++DRDRDR             +RRRDR+DRDRDR       DRD +
Sbjct: 1   MGDRERDRDRDRDRNRDRDRDR-------------ERRRDRDDRDRDR-------DRDRD 60

Query: 61  RERGRGKRSHTPERPRSRHTRSRTRSPDRHRSR----SLSRTPEDRSLRRRH---RSPSP 120
           R+R R KRS TPER R RHTRSRTRSPDR+RSR    S SR+P+DRS RRRH   RSPS 
Sbjct: 61  RDRVRSKRSRTPERIRPRHTRSRTRSPDRYRSRTRSVSRSRSPDDRSHRRRHHHNRSPSA 120

Query: 121 DHVRKRHRRDLTADDEKDRQKA-VSDFVEGIAKEQHKQKNNKDSVGGGESVEEAMADEDE 180
           +  RKR +R+ TA+DE++RQKA V+DFVEGIAKEQ  Q+      GG E +     DEDE
Sbjct: 121 E-ARKRQKREPTAEDERERQKAAVADFVEGIAKEQKTQQKQSSDGGGDEGL-----DEDE 180

Query: 181 IEMMKKLGIPVGFDSTKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 230
           IEMMKK GIP GFDSTKGKPV GADVSG+RAVTKRQPRQYMNRRGGFNRPLPAER R
Sbjct: 181 IEMMKKFGIPTGFDSTKGKPVPGADVSGIRAVTKRQPRQYMNRRGGFNRPLPAERNR 211

The following BLAST results are available for this feature:

BLAST of CmaCh10G003910 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SNR27_MOUSE	8.8e-10	41.53	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Mus musculus GN=Snrnp...	[more]
SNR27_HUMAN	1.2e-09	42.08	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Homo sapiens GN=SNRNP...	[more]
SNR27_XENLA	1.5e-09	36.60	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Xenopus laevis GN=snr...	[more]
SNR27_DANRE	9.8e-09	40.59	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Danio rerio GN=snrnp2...	[more]
SNR27_XENTR	9.8e-09	39.89	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Xenopus tropicalis GN...	[more]

BLAST of CmaCh10G003910 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LU61_CUCSA	2.2e-92	88.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G423230 PE=4 SV=1	[more]
M5XT32_PRUPE	7.0e-54	64.56	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011504mg PE=4 SV=1	[more]
W9QVX9_9ROSA	1.1e-51	67.30	Uncharacterized protein OS=Morus notabilis GN=L484_016764 PE=4 SV=1	[more]
A0A0S3R800_PHAAN	1.4e-49	63.11	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G479700 PE=...	[more]
A0A061GRR3_THECC	1.1e-48	64.89	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein isoform 1 OS=Theobroma c...	[more]

BLAST of CmaCh10G003910 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G57370.1	1.4e-37	55.93	unknown protein	[more]

BLAST of CmaCh10G003910 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659107269\|ref\|XP_008453595.1\|	2.2e-93	89.32	PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Cucumis melo...	[more]
gi\|449457171\|ref\|XP_004146322.1\|	3.2e-92	88.46	PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Cucumis sati...	[more]
gi\|1009105406\|ref\|XP_015893702.1\|	1.9e-57	65.38	PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Ziziphus juj...	[more]
gi\|470120729\|ref\|XP_004296443.1\|	2.5e-57	68.80	PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Fragaria ves...	[more]
gi\|645234349\|ref\|XP_008223770.1\|	2.4e-55	65.82	PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013957	SNRNP27

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008380	RNA splicing
cellular_component	GO:0044424	intracellular part
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh10G003910.1	CmaCh10G003910.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013957	Domain of unknown function DUF1777	PFAM	PF08648	DUF1777	coord: 51..223 score: 1.6
None	No IPR available	PANTHER	PTHR31077	FAMILY NOT NAMED	coord: 134..229 score: 6.8E-52coord: 1..108 score: 6.8
None	No IPR available	PANTHER	PTHR31077:SF1	U4/U6.U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 27 KDA PROTEIN	coord: 1..108 score: 6.8E-52coord: 134..229 score: 6.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh10G003910	Cucsa.081160	Cucumber (Gy14) v1	cgycmaB0146
CmaCh10G003910	Cla018838	Watermelon (97103) v1	cmawmB071
CmaCh10G003910	Csa1G423230	Cucumber (Chinese Long) v2	cmacuB058
CmaCh10G003910	MELO3C017454	Melon (DHL92) v3.5.1	cmameB067
CmaCh10G003910	CSPI01G20360	Wild cucumber (PI 183967)	cmacpiB060
CmaCh10G003910	CmoCh11G003810	Cucurbita moschata (Rifu)	cmacmoB068
CmaCh10G003910	CmoCh10G004200	Cucurbita moschata (Rifu)	cmacmoB067
CmaCh10G003910	MELO3C017454.2	Melon (DHL92) v3.6.1	cmamedB070
CmaCh10G003910	CsaV3_1G031690	Cucumber (Chinese Long) v3	cmacucB0068
CmaCh10G003910	Cla97C06G122890	Watermelon (97103) v2	cmawmbB081
CmaCh10G003910	Bhi02G000560	Wax gourd	cmawgoB0076
CmaCh10G003910	CsGy1G020170	Cucumber (Gy14) v2	cgybcmaB015
CmaCh10G003910	Carg15237	Silver-seed gourd	carcmaB1091
CmaCh10G003910	Carg09032	Silver-seed gourd	carcmaB0828

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh10G003910	CmaCh11G003860	Cucurbita maxima (Rimu)	cmacmaB072

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh10G003910	Cucumber (Chinese Long) v3	cmacucB0083
CmaCh10G003910	Cucumber (Chinese Long) v3	cmacucB0084
CmaCh10G003910	Watermelon (97103) v2	cmawmbB057
CmaCh10G003910	Wax gourd	cmawgoB0047
CmaCh10G003910	Wax gourd	cmawgoB0048
CmaCh10G003910	Cucurbita maxima (Rimu)	cmacmaB117
CmaCh10G003910	Cucumber (Gy14) v1	cgycmaB0174
CmaCh10G003910	Cucurbita moschata (Rifu)	cmacmoB096
CmaCh10G003910	Wild cucumber (PI 183967)	cmacpiB074
CmaCh10G003910	Wild cucumber (PI 183967)	cmacpiB075
CmaCh10G003910	Cucumber (Chinese Long) v2	cmacuB076
CmaCh10G003910	Cucumber (Chinese Long) v2	cmacuB077
CmaCh10G003910	Melon (DHL92) v3.5.1	cmameB075
CmaCh10G003910	Watermelon (Charleston Gray)	cmawcgB045
CmaCh10G003910	Watermelon (Charleston Gray)	cmawcgB046
CmaCh10G003910	Watermelon (Charleston Gray)	cmawcgB071
CmaCh10G003910	Watermelon (97103) v1	cmawmB067
CmaCh10G003910	Cucurbita pepo (Zucchini)	cmacpeB076
CmaCh10G003910	Cucurbita pepo (Zucchini)	cmacpeB080
CmaCh10G003910	Cucurbita pepo (Zucchini)	cmacpeB092
CmaCh10G003910	Bottle gourd (USVL1VR-Ls)	cmalsiB050
CmaCh10G003910	Bottle gourd (USVL1VR-Ls)	cmalsiB075
CmaCh10G003910	Cucumber (Gy14) v2	cgybcmaB155
CmaCh10G003910	Cucumber (Gy14) v2	cgybcmaB156
CmaCh10G003910	Melon (DHL92) v3.6.1	cmamedB080