CsGy1G019000 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G019000
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	methyl-CpG-binding domain-containing protein 11-like
Location	Chr1 : 17325443 .. 17327766 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCATGCATTTGATTATCAGACACGTGTCGCTCAACCATCCCTGCCGTCATGCTTCAAAGAACACCAACAGAAAATCGAAACCCAAATACAGCCGCGCTCTCTCTCTCTCTCACTGTCCTTGTCTCGACGAGCATAGCAAGAGAATAGAAAAAAATTGGAAACGATAAACAAGAATTTGTTGATCCATCCATCCAACACCTTAAATGGGTCCCAAATTCCGACCACAAATCCTTCTTTTCTTTCTCTTTAGGCGCCACAAGTTCGCTATTTCTCATCAATTATCCACAGCAGATAGCTTTTTGTTGAAACTGAGAGACGGGGAGAGCTCTGTCTTTTACCCCGCCCCCCCTTTTTTCATCCTTAGTGGGCATCTCTCTTTTTTCTCCCCCTCTTCTTTTTCGATACTTTCTGATGAGCTTCTTGATTCTCATTTGATTTGGGAAGTTGCAGAACATGGCGAGCACACTGGAAAAACAGGGGTCTAAAGAGGGTATTCTGTTCCTGGAATTGCCTGCTCCTCCTGGTTGGAACAAAAAGGTTTCCTCCTTTTTCTTCTTTTTATCTTACATTTTTGTCTCTCCTTTGAACTTCCCTTTGCTCATTTGTTGTGCTGTGAATTTTCTGATACTTCTGTACTTCTGTTCTGTGTTAGAATTTCAAGCTTGAATGTGTTTGTATGGAGGTTAGGGCTGATGGGTATCCTTGGAATTAAGCCGAATGCTATAACACTTATGCTTTGGGGCTTAGGGATTTGTTTTTTTCTTCTTCTTCTTTTTCTTTATAGATTCTATCGAATCTATCTTTTTGTTTAGTACTCATTAGCCAGTTATTGGAAAAAGTTGGTGTTAGTTCTGTCTCTTTTTCTTTATTGTTATTGTTTCTTTTTCTTGGAATGTTTTGAATCTCTTATCCTATACTCTGAATGATCAAACACGAAGTCTACTTGCTCTAGCAAGTTGGAGTCCTGATTGATGCACTCTAATAGAGTTGGGGTGCGACGCTTTTAGGCCGAAATTGTATTTATGTTATTTACATTATGATTTTGGTCAAATGGTTTAGAAGAGTGTGGTAGATGCATCTCTCTAAATCTGTAATATGATATTTTTTTCTCTCTCATTTTGTCTACGAACATAGCTAACATATTAGTGTATCACATAATTCACTCTGTCGATTTTGTTCACATTTTCTATTTGTTTTTTATTGTCGATTTATTAACAATACTTTACCGTTTCTCTTAAATGGTTCTTTCTAGTTGGAAGACCTTATTAGTATGCAACTGTTTGGTGTTTAGGTTAATTATAGTGAGGTTGCCTTGGTAGTGTCAATTTTCAATCAAGATAATTTGATTGATGCCAGTGAGTTTTCATTAAGTTGAGATAAAATGAGGTGAAAAATTAAAATCTTAGTTTATGTGCAGTTTCTACCCAAGTTAGATGGGATCACTAAGAAAAATGAAATCATCTTCATAGCTCCTACAGGGGAGGCGATCCATAACAAAAGGCAGCTGGATCAGTACTTGAAATCACATCCAGGTAATCCAGCATCTTCTGAGTTTGATTGGCGTACTGGTGAAACGCCTAGAAGATCAGCTAGAATTAGTGAGAAGGCAAAGGCAACTCCCCCCTCACCTCAAATTGAACGACGTAAGAAACGAACACGAAAACAAGCTCTTTCGAAAAAGGTTGAGGTTAAAGAGACAGTTGTTGTCCCATACGGTTTGGAGGAGGTAGGAGTTCATAAGGAAGACGAGACCAATGTCGATAGCGAGGTGAAAGAAATACACGAGGAGGAAAAGTATGAAAATAGAAAACTAGAAGATGAGAATGGAAAAGCTGAAACCACCCCCACCCCTGCCGAAATGGCTGAAGAGGGGTGGCGAATTGATGGCGATGAATGGGAGAAGCTTGCTAAAACGAAGCAGGGAAGTGAGGGTTCTGAGGATGCAAGAAAGGAAAATCAAAATTTGGAAGGAACAAATGGGGAAGAGAAGGTTCAACTTCAAAATGATGCAAAGGAATCCATTTCAGAAGAAATAACAGCTGAAGTTCAAAGAAACAACCAAGACGAACTTAGTGTTCCACAAAGAAGATGATGAAAAGGTAACAAATTGACACAATTGGAAGTAGTAGTGATGAGAGTCTGTGAGATTGATTTACATGTCTAGTTTGAACCGTTACCGGATTACCGGATTCATATGCTGAGACATATCTATGTAATTATCATTAATAGGATAGTCATTTGTATCTATCTGTATGTACCATATTTGTATAAACATTTTAGTGTGCAACAATTTTATTGAAGTTGTTAACTTAAAAACCTTGTCT

mRNA sequence

GCATGCATTTGATTATCAGACACGTGTCGCTCAACCATCCCTGCCGTCATGCTTCAAAGAACACCAACAGAAAATCGAAACCCAAATACAGCCGCGCTCTCTCTCTCTCTCACTGTCCTTGTCTCGACGAGCATAGCAAGAGAATAGAAAAAAATTGGAAACGATAAACAAGAATTTGTTGATCCATCCATCCAACACCTTAAATGGGTCCCAAATTCCGACCACAAATCCTTCTTTTCTTTCTCTTTAGGCGCCACAAGTTCGCTATTTCTCATCAATTATCCACAGCAGATAGCTTTTTGTTGAAACTGAGAGACGGGGAGAGCTCTGTCTTTTACCCCGCCCCCCCTTTTTTCATCCTTAGTGGGCATCTCTCTTTTTTCTCCCCCTCTTCTTTTTCGATACTTTCTGATGAGCTTCTTGATTCTCATTTGATTTGGGAAGTTGCAGAACATGGCGAGCACACTGGAAAAACAGGGGTCTAAAGAGGGTATTCTGTTCCTGGAATTGCCTGCTCCTCCTGGTTGGAACAAAAAGTTTCTACCCAAGTTAGATGGGATCACTAAGAAAAATGAAATCATCTTCATAGCTCCTACAGGGGAGGCGATCCATAACAAAAGGCAGCTGGATCAGTACTTGAAATCACATCCAGGTAATCCAGCATCTTCTGAGTTTGATTGGCGTACTGGTGAAACGCCTAGAAGATCAGCTAGAATTAGTGAGAAGGCAAAGGCAACTCCCCCCTCACCTCAAATTGAACGACGTAAGAAACGAACACGAAAACAAGCTCTTTCGAAAAAGGTTGAGGTTAAAGAGACAGTTGTTGTCCCATACGGTTTGGAGGAGGTAGGAGTTCATAAGGAAGACGAGACCAATGTCGATAGCGAGGTGAAAGAAATACACGAGGAGGAAAAGTATGAAAATAGAAAACTAGAAGATGAGAATGGAAAAGCTGAAACCACCCCCACCCCTGCCGAAATGGCTGAAGAGGGGTGGCGAATTGATGGCGATGAATGGGAGAAGCTTGCTAAAACGAAGCAGGGAAGTGAGGGTTCTGAGGATGCAAGAAAGGAAAATCAAAATTTGGAAGGAACAAATGGGGAAGAGAAGGTTCAACTTCAAAATGATGCAAAGGAATCCATTTCAGAAGAAATAACAGCTGAAGTTCAAAGAAACAACCAAGACGAACTTAGTGTTCCACAAAGAAGATGATGAAAAGGTAACAAATTGACACAATTGGAAGTAGTAGTGATGAGAGTCTGTGAGATTGATTTACATGTCTAGTTTGAACCGTTACCGGATTACCGGATTCATATGCTGAGACATATCTATGTAATTATCATTAATAGGATAGTCATTTGTATCTATCTGTATGTACCATATTTGTATAAACATTTTAGTGTGCAACAATTTTATTGAAGTTGTTAACTTAAAAACCTTGTCT

Coding sequence (CDS)

ATGGCGAGCACACTGGAAAAACAGGGGTCTAAAGAGGGTATTCTGTTCCTGGAATTGCCTGCTCCTCCTGGTTGGAACAAAAAGTTTCTACCCAAGTTAGATGGGATCACTAAGAAAAATGAAATCATCTTCATAGCTCCTACAGGGGAGGCGATCCATAACAAAAGGCAGCTGGATCAGTACTTGAAATCACATCCAGGTAATCCAGCATCTTCTGAGTTTGATTGGCGTACTGGTGAAACGCCTAGAAGATCAGCTAGAATTAGTGAGAAGGCAAAGGCAACTCCCCCCTCACCTCAAATTGAACGACGTAAGAAACGAACACGAAAACAAGCTCTTTCGAAAAAGGTTGAGGTTAAAGAGACAGTTGTTGTCCCATACGGTTTGGAGGAGGTAGGAGTTCATAAGGAAGACGAGACCAATGTCGATAGCGAGGTGAAAGAAATACACGAGGAGGAAAAGTATGAAAATAGAAAACTAGAAGATGAGAATGGAAAAGCTGAAACCACCCCCACCCCTGCCGAAATGGCTGAAGAGGGGTGGCGAATTGATGGCGATGAATGGGAGAAGCTTGCTAAAACGAAGCAGGGAAGTGAGGGTTCTGAGGATGCAAGAAAGGAAAATCAAAATTTGGAAGGAACAAATGGGGAAGAGAAGGTTCAACTTCAAAATGATGCAAAGGAATCCATTTCAGAAGAAATAACAGCTGAAGTTCAAAGAAACAACCAAGACGAACTTAGTGTTCCACAAAGAAGATGA

Protein sequence

MASTLEKQGSKEGILFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEAIHNKRQLDQYLKSHPGNPASSEFDWRTGETPRRSARISEKAKATPPSPQIERRKKRTRKQALSKKVEVKETVVVPYGLEEVGVHKEDETNVDSEVKEIHEEEKYENRKLEDENGKAETTPTPAEMAEEGWRIDGDEWEKLAKTKQGSEGSEDARKENQNLEGTNGEEKVQLQNDAKESISEEITAEVQRNNQDELSVPQRR

Homology

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BLAST of CsGy1G019000 vs. NCBI nr
Match: XP_004150031.1 (PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Cucumis sativus] >XP_011659821.1 PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Cucumis sativus])

HSP 1 Score: 414.5 bits (1064), Expect = 2.7e-112
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 0


Query: 1   MASTLEKQGSKEGILFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEAIHNKRQLDQ 60
           MASTLEKQGSKEGILFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEAIHNKRQLDQ
Sbjct: 1   MASTLEKQGSKEGILFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEAIHNKRQLDQ 60

Query: 61  YLKSHPGNPASSEFDWRTGETPRRSARISEKAKATPPSPQIERRKKRTRKQALSKKVEVK 120
           YLKSHPGNPASSEFDWRTGETPRRSARISEKAKATPPSPQIERRKKRTRKQALSKKVEVK
Sbjct: 61  YLKSHPGNPASSEFDWRTGETPRRSARISEKAKATPPSPQIERRKKRTRKQALSKKVEVK 120

Query: 121 ETVVVPYGLEEVGVHKEDETNVDSEVKEIHEEEKYENRKLEDENGKAETTPTPAEMAEEG 180
           ETVVVPYGLEEVGVHKEDETNVDSEVKEIHEEEKYENRKLEDENGKAETTPTPAEMAEEG
Sbjct: 121 ETVVVPYGLEEVGVHKEDETNVDSEVKEIHEEEKYENRKLEDENGKAETTPTPAEMAEEG 180

Query: 181 WRIDGDEWEKLAKTKQGSEGSEDARKENQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           WRIDGDEWEKLAKTKQGSEGSEDARKENQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 WRIDGDEWEKLAKTKQGSEGSEDARKENQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXQDELSVPQRR 253
           XXQDELSVPQRR
Sbjct: 241 XXQDELSVPQRR 252

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BLAST of CsGy1G019000 vs. NCBI nr
Match: XP_008443980.1 (PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Cucumis melo] >XP_008443981.1 PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Cucumis melo])

HSP 1 Score: 344.7 bits (883), Expect = 2.6e-91
Identity = 185/209 (88.52%), Postives = 188/209 (89.95%), Query Frame = 0


Query: 1   MASTLEKQGSKEGILFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEAIHNKRQLDQ 60
           MASTLEKQGSKE +LFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGE IHNKRQLDQ
Sbjct: 1   MASTLEKQGSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHNKRQLDQ 60

Query: 61  YLKSHPGNPASSEFDWRTGETPRRSARISEKAKATPPSPQIERRKKRTRKQALSKKVEVK 120
           YLKSHPGN ASSEFDW TGETPRRSARISEKAKATPPSP IER KKRTRKQAL KK E K
Sbjct: 61  YLKSHPGNLASSEFDWGTGETPRRSARISEKAKATPPSPHIERPKKRTRKQALLKKFEDK 120

Query: 121 ETVVVPYGLEEVGVHKEDETNVDSEVKEIHEEEKYENRKLEDENGKAETTPTPAEMAEEG 180
           ETVVVP G EE GVHKEDETNVDSEVKEI  E KYENRKLEDE  KAETTPTPAEMAEEG
Sbjct: 121 ETVVVPDGFEEAGVHKEDETNVDSEVKEIQVEGKYENRKLEDEKLKAETTPTPAEMAEEG 180

Query: 181 WRIDGDEWEKLAKTKQGSEGSEDARKENQ 210
            + D DE +KLAKTKQGSEGSEDARKENQ
Sbjct: 181 RQSDDDECKKLAKTKQGSEGSEDARKENQ 209

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BLAST of CsGy1G019000 vs. NCBI nr
Match: XP_022144823.1 (methyl-CpG-binding domain-containing protein 11-like [Momordica charantia])

HSP 1 Score: 206.8 bits (525), Expect = 8.4e-50
Identity = 130/219 (59.36%), Postives = 153/219 (69.86%), Query Frame = 0


Query: 1   MASTLEKQGSKEGILFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEAIHNKRQLDQ 60
           MAST+ K+GS E +LFLELPAPPGW KKFLPKLDGITKK EIIF+APTGE I+ KRQL Q
Sbjct: 18  MASTV-KEGSNEDLLFLELPAPPGWKKKFLPKLDGITKKKEIIFLAPTGEEINGKRQLHQ 77

Query: 61  YLKSHPGNPASSEFDWRTGETPRRSARISEKAKATPPSPQIERRKKRTRKQALSKKVEVK 120
           YLKSHPGNPASSEFDW TGETPR+SARISE+ KA  P P+IE  KKRTRK A+SKK + +
Sbjct: 78  YLKSHPGNPASSEFDWGTGETPRKSARISERVKAA-PLPRIEWPKKRTRKLAVSKKDDKE 137

Query: 121 ETVVVPYGLEEVGVHKEDETNVDSEVKEIHEEEKYENRKLEDENGKAETTPTPA------ 180
             VV+    E   VHK+D    +S V +   +   ENR L+DE+   ET P PA      
Sbjct: 138 ADVVLDGSEEARAVHKQDADKYESGVTD--GKGNQENRTLQDED--VETAPAPAPVLASS 197

Query: 181 EMAEEGWRIDGDEWEKLAKTKQGS-------EGSEDARK 207
           E AEEG ++DG+E E  A+ + GS       EGSEDA K
Sbjct: 198 EPAEEGQQLDGEECENPAEIEWGSAEGNKETEGSEDATK 230

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BLAST of CsGy1G019000 vs. NCBI nr
Match: EOY31101.1 (Methyl-CPG-binding domain 10, putative isoform 1 [Theobroma cacao] >EOY31102.1 Methyl-CPG-binding domain 10, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 154.5 bits (389), Expect = 4.9e-34
Identity = 84/134 (62.69%), Postives = 100/134 (74.63%), Query Frame = 0


Query: 1   MASTLEK---QGSKEGILFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEAIHNKRQ 60
           MAS++EK   +G+KE ++ LELPAPPGW KKF+PK  G  KKNEI+F APTGE I N++Q
Sbjct: 1   MASSVEKKETEGAKEDVVCLELPAPPGWKKKFMPKKGGTPKKNEILFTAPTGEEISNRKQ 60

Query: 61  LDQYLKSHPGNPASSEFDWRTGETPRRSARISEKAKATPPSPQIERRKKRTRKQALSKKV 120
           L+QYLK+HPG PA S FDW TGETPRRSARISEK KA  P+P+ E  KKR RK + SKK 
Sbjct: 61  LEQYLKAHPGGPAVSVFDWGTGETPRRSARISEKVKAM-PTPESEPPKKRGRKSSASKK- 120

Query: 121 EVKETVVVPYGLEE 132
           +  ET   P G EE
Sbjct: 121 DNXETETGPEGTEE 132

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BLAST of CsGy1G019000 vs. NCBI nr
Match: XP_023537783.1 (methyl-CpG-binding domain-containing protein 10-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 154.1 bits (388), Expect = 6.5e-34
Identity = 85/153 (55.56%), Postives = 110/153 (71.90%), Query Frame = 0


Query: 1   MASTLEKQGSKEGILFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEAIHNKRQLDQ 60
           MA ++EK  S E +L  ELPAPPGW KKF PK     +K+E+IFI PTGE I++KR+LDQ
Sbjct: 1   MAESVEKDTSNEEVLSFELPAPPGWKKKFFPKQGKSPRKHEVIFITPTGEEINHKRKLDQ 60

Query: 61  YLKSHPGNPASSEFDWRTGETPRRSARISEKAKATPPSPQIERRKKRTRKQALSKKVEVK 120
           YLK+HPG PA++EFDW TGETPRRSARISEK+K TPP   +ER   + R+ ++SKK ++K
Sbjct: 61  YLKAHPGGPAAAEFDWSTGETPRRSARISEKSKVTPP---VEREHPKRRRSSVSKK-DIK 120

Query: 121 ETVVVPYGL-EEVGVHKED----ETNVDSEVKE 149
           ET   P  L EE  +  +D    E+ VD+EVK+
Sbjct: 121 ETEAEPEVLEEEKEIDNQDGEKHESMVDAEVKD 149

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BLAST of CsGy1G019000 vs. TAIR10
Match: AT3G15790.1 (methyl-CPG-binding domain 11)

HSP 1 Score: 125.9 bits (315), Expect = 3.4e-29
Identity = 87/179 (48.60%), Postives = 105/179 (58.66%), Query Frame = 0


Query: 9   GSKEGILFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEAIHNKRQLDQYLKSHPGN 68
           G +E ++ +ELPAP  W K F P   G  KK E++F+APTGE I N++QL+QYLKSHPGN
Sbjct: 2   GGEEEVVSVELPAPSSWKKLFYPNKVGSVKKTEVVFVAPTGEEISNRKQLEQYLKSHPGN 61

Query: 69  PASSEFDWRTGETPRRSARISEKAKATPPSPQIERRKKRTR-KQALSKKVEVKETVVVPY 128
           PA +EFDW T  TPRRSARISEK KAT PSP  E  KKR R K  +SKK    E      
Sbjct: 62  PAIAEFDWTTSGTPRRSARISEKTKAT-PSPDKEPPKKRGRTKSPVSKKDAEGEK--SEG 121

Query: 129 GLEEVGVHKEDETNVDSEVKE----IHEEEKYENRKLED--ENGKAETTPTPAEMAEEG 181
           G EE    K+ E N    + E      +    E  ++ D  EN  AE TP  A + EEG
Sbjct: 122 GGEENSHVKDTEMNPPEGIAENENVTDKNGSGETERVNDAKENIVAEETPNAAPVQEEG 177

[Close]

BLAST of CsGy1G019000 vs. TAIR10
Match: AT1G15340.1 (methyl-CPG-binding domain 10)

HSP 1 Score: 120.9 bits (302), Expect = 1.1e-27
Identity = 56/96 (58.33%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 14  ILFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEAIHNKRQLDQYLKSHPGNPASSE 73
           ++ +ELPAP  W K F PK  G  +K EI+F+APTGE I +++QL+QYLK+HPGNP  SE
Sbjct: 7   LVSIELPAPASWKKLFYPKRAGTPRKTEIVFVAPTGEEISSRKQLEQYLKAHPGNPVISE 66

Query: 74  FDWRTGETPRRSARISEKAKATPPSPQIERRKKRTR 110
           F+W TGETPRRS+RIS+K KAT P+P  E   K+ R
Sbjct: 67  FEWTTGETPRRSSRISQKVKATTPTPDKEPLLKKRR 102

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BLAST of CsGy1G019000 vs. Swiss-Prot
Match: sp|Q9LW00|MBD11_ARATH (Methyl-CpG-binding domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=MBD11 PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 6.2e-28
Identity = 87/179 (48.60%), Postives = 105/179 (58.66%), Query Frame = 0


Query: 9   GSKEGILFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEAIHNKRQLDQYLKSHPGN 68
           G +E ++ +ELPAP  W K F P   G  KK E++F+APTGE I N++QL+QYLKSHPGN
Sbjct: 2   GGEEEVVSVELPAPSSWKKLFYPNKVGSVKKTEVVFVAPTGEEISNRKQLEQYLKSHPGN 61

Query: 69  PASSEFDWRTGETPRRSARISEKAKATPPSPQIERRKKRTR-KQALSKKVEVKETVVVPY 128
           PA +EFDW T  TPRRSARISEK KAT PSP  E  KKR R K  +SKK    E      
Sbjct: 62  PAIAEFDWTTSGTPRRSARISEKTKAT-PSPDKEPPKKRGRTKSPVSKKDAEGEK--SEG 121

Query: 129 GLEEVGVHKEDETNVDSEVKE----IHEEEKYENRKLED--ENGKAETTPTPAEMAEEG 181
           G EE    K+ E N    + E      +    E  ++ D  EN  AE TP  A + EEG
Sbjct: 122 GGEENSHVKDTEMNPPEGIAENENVTDKNGSGETERVNDAKENIVAEETPNAAPVQEEG 177

[Close]

BLAST of CsGy1G019000 vs. Swiss-Prot
Match: sp|Q9XI36|MBD10_ARATH (Methyl-CpG-binding domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=MBD10 PE=1 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.0e-26
Identity = 56/96 (58.33%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 14  ILFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEAIHNKRQLDQYLKSHPGNPASSE 73
           ++ +ELPAP  W K F PK  G  +K EI+F+APTGE I +++QL+QYLK+HPGNP  SE
Sbjct: 7   LVSIELPAPASWKKLFYPKRAGTPRKTEIVFVAPTGEEISSRKQLEQYLKAHPGNPVISE 66

Query: 74  FDWRTGETPRRSARISEKAKATPPSPQIERRKKRTR 110
           F+W TGETPRRS+RIS+K KAT P+P  E   K+ R
Sbjct: 67  FEWTTGETPRRSSRISQKVKATTPTPDKEPLLKKRR 102

[Close]

BLAST of CsGy1G019000 vs. TrEMBL
Match: tr|A0A1S3B9A2|A0A1S3B9A2_CUCME (methyl-CpG-binding domain-containing protein 11-like OS=Cucumis melo OX=3656 GN=LOC103487437 PE=4 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 1.7e-91
Identity = 185/209 (88.52%), Postives = 188/209 (89.95%), Query Frame = 0


Query: 1   MASTLEKQGSKEGILFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEAIHNKRQLDQ 60
           MASTLEKQGSKE +LFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGE IHNKRQLDQ
Sbjct: 1   MASTLEKQGSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHNKRQLDQ 60

Query: 61  YLKSHPGNPASSEFDWRTGETPRRSARISEKAKATPPSPQIERRKKRTRKQALSKKVEVK 120
           YLKSHPGN ASSEFDW TGETPRRSARISEKAKATPPSP IER KKRTRKQAL KK E K
Sbjct: 61  YLKSHPGNLASSEFDWGTGETPRRSARISEKAKATPPSPHIERPKKRTRKQALLKKFEDK 120

Query: 121 ETVVVPYGLEEVGVHKEDETNVDSEVKEIHEEEKYENRKLEDENGKAETTPTPAEMAEEG 180
           ETVVVP G EE GVHKEDETNVDSEVKEI  E KYENRKLEDE  KAETTPTPAEMAEEG
Sbjct: 121 ETVVVPDGFEEAGVHKEDETNVDSEVKEIQVEGKYENRKLEDEKLKAETTPTPAEMAEEG 180

Query: 181 WRIDGDEWEKLAKTKQGSEGSEDARKENQ 210
            + D DE +KLAKTKQGSEGSEDARKENQ
Sbjct: 181 RQSDDDECKKLAKTKQGSEGSEDARKENQ 209

[Close]

BLAST of CsGy1G019000 vs. TrEMBL
Match: tr|A0A061GPN0|A0A061GPN0_THECC (Methyl-CPG-binding domain 10, putative isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_038107 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 3.3e-34
Identity = 84/134 (62.69%), Postives = 100/134 (74.63%), Query Frame = 0


Query: 1   MASTLEK---QGSKEGILFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEAIHNKRQ 60
           MAS++EK   +G+KE ++ LELPAPPGW KKF+PK  G  KKNEI+F APTGE I N++Q
Sbjct: 1   MASSVEKKETEGAKEDVVCLELPAPPGWKKKFMPKKGGTPKKNEILFTAPTGEEISNRKQ 60

Query: 61  LDQYLKSHPGNPASSEFDWRTGETPRRSARISEKAKATPPSPQIERRKKRTRKQALSKKV 120
           L+QYLK+HPG PA S FDW TGETPRRSARISEK KA  P+P+ E  KKR RK + SKK 
Sbjct: 61  LEQYLKAHPGGPAVSVFDWGTGETPRRSARISEKVKAM-PTPESEPPKKRGRKSSASKK- 120

Query: 121 EVKETVVVPYGLEE 132
           +  ET   P G EE
Sbjct: 121 DNXETETGPEGTEE 132

[Close]

BLAST of CsGy1G019000 vs. TrEMBL
Match: tr|A0A251JD02|A0A251JD02_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G133700 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 5.6e-34
Identity = 94/188 (50.00%), Postives = 121/188 (64.36%), Query Frame = 0


Query: 1   MASTLEKQGS-KEGILFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEAIHNKRQLD 60
           MAS++EK  S +E    LELPAPPGW KKF+PK  G  KKNEIIF AP+GE I  +RQL+
Sbjct: 1   MASSVEKDTSIQEEDFSLELPAPPGWKKKFVPKKSGTPKKNEIIFTAPSGEEITGRRQLE 60

Query: 61  QYLKSHPGNPASSEFDWRTGETPRRSARISEKAKATPPSPQIERRKKRTRKQALSKKVEV 120
           QYLK+HPG PA+SEFDW TGETPRRSARISEKAKA  P+P+ E  KKR+RK +  KK E 
Sbjct: 61  QYLKAHPGGPAASEFDWGTGETPRRSARISEKAKAA-PTPETESPKKRSRKLSAPKK-EN 120

Query: 121 KETVVVPYG--------LEEVGVHKEDETNVDSEVKEIHEEEKYENRKLEDENGKAETTP 180
           KE    P G        ++E G   +D+  +++  +++   ++    K  D + K E TP
Sbjct: 121 KEPETAPEGAEKTKDTQMQEAGKIGKDDAEMEAGKEDVKGNQEGNKDKPLDSDAKTEATP 180

[Close]

BLAST of CsGy1G019000 vs. TrEMBL
Match: tr|W9RA09|W9RA09_9ROSA (Methyl-CpG-binding domain-containing protein 10 OS=Morus notabilis OX=981085 GN=L484_006426 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 7.3e-34
Identity = 81/134 (60.45%), Postives = 100/134 (74.63%), Query Frame = 0


Query: 1   MASTLEKQGSKEGILFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEAIHNKRQLDQ 60
           MAS++EK+ + E ++ LELPAPPGW KKFLPK  G  KKNEIIF APTGE I N++QL+Q
Sbjct: 13  MASSVEKESANEEVVSLELPAPPGWKKKFLPKQGGTPKKNEIIFTAPTGEEISNRKQLEQ 72

Query: 61  YLKSHPGNPASSEFDWRTGETPRRSARISEKAKATPPSPQIERRKKRTRKQALSKKVEVK 120
           YLK+HPG PA+S+FDW TGETPRRSARISEK KA  P  + E  KKR+RK + SK+ + K
Sbjct: 73  YLKAHPGGPAASDFDWGTGETPRRSARISEKTKAAHPR-ESEPPKKRSRKTSASKQ-DNK 132

Query: 121 ETVVVPYGLEEVGV 135
           +    P G +E  V
Sbjct: 133 DKDPAPEGTQETKV 144

[Close]

BLAST of CsGy1G019000 vs. TrEMBL
Match: tr|M5W9H0|M5W9H0_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G245300 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.1e-32
Identity = 74/97 (76.29%), Postives = 81/97 (83.51%), Query Frame = 0


Query: 1  MASTLEKQGSKEGILFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEAIHNKRQLDQ 60
          MAS++EK+G  E ++ LELPAP GW KKFLPK  G  KKNEIIF APTGE I NKRQL+Q
Sbjct: 1  MASSVEKEG--EEVVSLELPAPSGWVKKFLPKQSGTPKKNEIIFTAPTGEEITNKRQLEQ 60

Query: 61 YLKSHPGNPASSEFDWRTGETPRRSARISEKAKATPP 98
          YLK+HPG PA SEFDW TGETPRRSARISEKAKATPP
Sbjct: 61 YLKAHPGGPAVSEFDWSTGETPRRSARISEKAKATPP 95

The following BLAST results are available for this feature:

BLAST of CsGy1G019000 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150031.1	2.7e-112	100.00	PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Cucumis sativus...	[more]
XP_008443980.1	2.6e-91	88.52	PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Cucumis melo] >...	[more]
XP_022144823.1	8.4e-50	59.36	methyl-CpG-binding domain-containing protein 11-like [Momordica charantia]	[more]
EOY31101.1	4.9e-34	62.69	Methyl-CPG-binding domain 10, putative isoform 1 [Theobroma cacao] >EOY31102.1 M...	[more]
XP_023537783.1	6.5e-34	55.56	methyl-CpG-binding domain-containing protein 10-like isoform X1 [Cucurbita pepo ...	[more]

BLAST of CsGy1G019000 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15790.1	3.4e-29	48.60	methyl-CPG-binding domain 11	[more]
AT1G15340.1	1.1e-27	58.33	methyl-CPG-binding domain 10	[more]

BLAST of CsGy1G019000 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LW00\|MBD11_ARATH	6.2e-28	48.60	Methyl-CpG-binding domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 ...	[more]
sp\|Q9XI36\|MBD10_ARATH	2.0e-26	58.33	Methyl-CpG-binding domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of CsGy1G019000 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B9A2\|A0A1S3B9A2_CUCME	1.7e-91	88.52	methyl-CpG-binding domain-containing protein 11-like OS=Cucumis melo OX=3656 GN=...	[more]
tr\|A0A061GPN0\|A0A061GPN0_THECC	3.3e-34	62.69	Methyl-CPG-binding domain 10, putative isoform 1 OS=Theobroma cacao OX=3641 GN=T...	[more]
tr\|A0A251JD02\|A0A251JD02_MANES	5.6e-34	50.00	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G133700 PE=4 SV=...	[more]
tr\|W9RA09\|W9RA09_9ROSA	7.3e-34	60.45	Methyl-CpG-binding domain-containing protein 10 OS=Morus notabilis OX=981085 GN=...	[more]
tr\|M5W9H0\|M5W9H0_PRUPE	1.1e-32	76.29	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G245300 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **INTERPRO**
Term	Definition
IPR016177	DNA-bd_dom_sf
IPR001739	Methyl_CpG_DNA-bd

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G019000.1	CsGy1G019000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 150..170
None	No IPR available	GENE3D	G3DSA:3.30.890.10		coord: 7..113 e-value: 9.7E-7 score: 30.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..252
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..168
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 235..252
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 179..213
None	No IPR available	PANTHER	PTHR33729	FAMILY NOT NAMED	coord: 11..243
None	No IPR available	PANTHER	PTHR33729:SF4	METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 10-RELATED	coord: 11..243
IPR001739	Methyl-CpG DNA binding	PFAM	PF01429	MBD	coord: 18..81 e-value: 6.4E-10 score: 38.5
IPR001739	Methyl-CpG DNA binding	PROSITE	PS50982	MBD	coord: 11..81 score: 12.781
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	SSF54171	DNA-binding domain	coord: 14..109

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G019000	Cla012225	Watermelon (97103) v1	cgybwmB081
CsGy1G019000	Cla016699	Watermelon (97103) v1	cgybwmB075
CsGy1G019000	Csa2G006830	Cucumber (Chinese Long) v2	cgybcuB016
CsGy1G019000	Csa4G005520	Cucumber (Chinese Long) v2	cgybcuB028
CsGy1G019000	CsaUNG026610	Cucumber (Chinese Long) v2	cgybcuB032
CsGy1G019000	MELO3C017880	Melon (DHL92) v3.5.1	cgybmeB074
CsGy1G019000	MELO3C004492	Melon (DHL92) v3.5.1	cgybmeB066
CsGy1G019000	MELO3C010329	Melon (DHL92) v3.5.1	cgybmeB051
CsGy1G019000	ClCG11G003150	Watermelon (Charleston Gray)	cgybwcgB007
CsGy1G019000	ClCG06G011310	Watermelon (Charleston Gray)	cgybwcgB065
CsGy1G019000	CSPI02G01800	Wild cucumber (PI 183967)	cgybcpiB014
CsGy1G019000	CSPIUnG00210	Wild cucumber (PI 183967)	cgybcpiB048
CsGy1G019000	CmaCh12G012000	Cucurbita maxima (Rimu)	cgybcmaB059
CsGy1G019000	CmaCh05G012860	Cucurbita maxima (Rimu)	cgybcmaB137
CsGy1G019000	CmoCh12G012290	Cucurbita moschata (Rifu)	cgybcmoB055
CsGy1G019000	CmoCh05G013070	Cucurbita moschata (Rifu)	cgybcmoB129
CsGy1G019000	Lsi11G003270	Bottle gourd (USVL1VR-Ls)	cgyblsiB007
CsGy1G019000	Lsi06G009820	Bottle gourd (USVL1VR-Ls)	cgyblsiB057
CsGy1G019000	Cp4.1LG11g10530	Cucurbita pepo (Zucchini)	cgybcpeB031
CsGy1G019000	MELO3C004492.2	Melon (DHL92) v3.6.1	cgybmedB062
CsGy1G019000	MELO3C010329.2	Melon (DHL92) v3.6.1	cgybmedB047
CsGy1G019000	CsaV3_4G001590	Cucumber (Chinese Long) v3	cgybcucB032
CsGy1G019000	CsaV3_1G030350	Cucumber (Chinese Long) v3	cgybcucB001
CsGy1G019000	CsaV3_2G002970	Cucumber (Chinese Long) v3	cgybcucB015
CsGy1G019000	Cla97C11G209600	Watermelon (97103) v2	cgybwmbB020
CsGy1G019000	Cla97C06G120480	Watermelon (97103) v2	cgybwmbB065
CsGy1G019000	Bhi02G000814	Wax gourd	cgybwgoB096
CsGy1G019000	Carg10913	Silver-seed gourd	carcgybB0570

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CsGy1G019000	CsGy2G001830	Cucumber (Gy14) v2	cgybcgybB008
CsGy1G019000	CsGy4G001450	Cucumber (Gy14) v2	cgybcgybB023

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G019000	Wax gourd	cgybwgoB003
CsGy1G019000	Cucurbita maxima (Rimu)	cgybcmaB017
CsGy1G019000	Cucurbita maxima (Rimu)	cgybcmaB047
CsGy1G019000	Cucurbita moschata (Rifu)	cgybcmoB016
CsGy1G019000	Cucurbita moschata (Rifu)	cgybcmoB044
CsGy1G019000	Cucurbita pepo (Zucchini)	cgybcpeB044
CsGy1G019000	Cucurbita pepo (Zucchini)	cgybcpeB114
CsGy1G019000	Cucurbita pepo (Zucchini)	cgybcpeB146
CsGy1G019000	Cucumber (Chinese Long) v2	cgybcuB002
CsGy1G019000	Wild cucumber (PI 183967)	cgybcpiB002
CsGy1G019000	Silver-seed gourd	carcgybB0039
CsGy1G019000	Silver-seed gourd	carcgybB0133