CSPIUnG00210 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPIUnG00210
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Methyl-CpG-binding domain protein
Location	Scaffold000101 : 34123 .. 36252 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATCCAACACCTTAAATGGGTCCCAAATTCCGACCACAAATCCTTCTTTTCTTTCTCTTTAGGCGCCACAAGTTCGCTATTTCTCATCAATTATCCACAGCAGATAGCTTTTTGTTGAAACTGAGAAACGGGGAGAGCTCTGTCTTTTACCCCGCCCCCCCTTTTTTCATCCTTAGTGGGCATCTCTCTTTTTTCTCCCCCTCTTCTTTTTCGATACTTTCTGATGAGCTTCTTGATTCTCATTTGATTTGGGAAGTTGCAGAACATGGCGAGCACACTGGAAAAACAGGGGTCTAAAGAGGATATTCTGTTCCTGGAATTGCCTGCTCCTCCTGGTTGGAACAAAAAGGTTTCCTCCTTTTTCTTCTTTTTATCTTACATTTTTGTCTCTCCTTTGAACTTCCCTTTGCTCATTTGTTGTGCTGTGAATTTTCTGATACTTCTGTACTTCTGTTCTGTGTTAGAATTTCAAGCTTGAATGTGTTTGTATGGAGGTTAGGGCTGATGGGTATCCTTGGAATTAAGCAGAATGCTATAACACTTATGCTTTGGGGCTTAGGGATTTGTTTTTTTCTTCTTCTTCTTTTTCTTTATAGATTCTATCGAATCTATCTTTTTGTTTAGTACTCATTAGCCAGTTATTGGAAAAAGTTGGTGTTAGTTCTGTCTCTTTTTCTTTATTGTTATTGTTTCTTTTTCTTGGAATGTTTTGAATCTCTTATCCTATACTCTGAATGATCAAACACGAAGTCTACTTGCTCTAGCAAGTTGGAGTCCTGATTGATGCACTCTAATAGAGTTGGGGTGCGACGCTTTTAGGCCGAAATTGTATTTATGTTATTTACATTATGATTTTGGTCAAATGGTTTAGAAGAGTGTGGTAGATGCATCTCTCTAAATCTGTAATATGATATTTTTTTCTCTCTCATTTTGTCTACGAACATAGCTAACATATTAGTGTATCACATAATTCACTCTGTCGATTTTGTTCACATTTTCTATTTGTTTTTTATTGTCGATTTATTAACAATACTTTACCGTTTCTCTTAAATGGTTCTTTCTAGTTGGAAGACCTTATTAGTATGCAACTGTTTGGTGTTTAGGTTAATTATAGTGAGGTTGCCTTGGTAGTGTCAATTTTCAATCAAGATAATTTGATTGATGCCAGTGAGTTTTCATTAAGTTGAGATAAAATGAGGTGAAAAATTAAAATCTTAGTTTATGTGCAGTTTCTACCCAAGTTAGATGGGATCACTAAGAAAAATGAAATCATCTTCATAGCTCCTACAGGGGAGGCGATCCATAACAAAAGGCAGCTGGATCAGTACTTGAAATCACATCCAGGTAATCCAGCATCTTCTGAGTTTGATTGGCGTACTGGTGAAACGCCTAGAAGATCAGCTAGAATTAGTGAGAAGGCAAAGGCAACTCCCCCCTCACCTCAAATTGAACGACGTAAGAAACGAACACGAAAACAAGCTCTTTCGAAAAAGGTTGAGGTTAAAGAGACAGTTGTTGTCCCATACGGTTTGGAGGAGGTAGGAGTTCATAAGGAAGACGAGACCAATGTCGATAGCGAGGTGAAAGAAATACACGAGGAGGAAAAGTATGAAAATAGAAAACTAGAAGATGAGAATGGAAAAGCTGAAACCACCCCCACCCCTGCCGAAATGGCTGAAGAGGGGTGGCGAATTGATGGCGATGAATGGGAGAAGCTTGCTAAAACGAAGCAGGGAAGTGAGGGTTCTGAGGATGCAAGAAAGGAAAATCAAAATTTGGAAGGAACAAATGGGGAAGAGAAGGTTCAACTTCAAAATGATGCAAAGGAATCCATTTCAGAAGAAATAACAGCTGAAGTTCAAAGAAACAACCAAGACGAACTTAGTGTTCCACAAAGAAGATGATGAAAAGGTAACAAATTGACACAATTGGAAGTAGTAGTGATGAGAGTCTGTGAGATTGATTTACATGTCTAGTTTGAACCGTTACCGGATTACCCGATTCATATGCTGAGACATATCTATGTAATTATCATTAATAGGATAGTCATTTGTATCTATCTGTATGTACCATATTTGTATAAACATTTTAGTGTGCAACAATTTTATTGAAGTTGTTAACTTAAAAACC

mRNA sequence

ATGGCGAGCACACTGGAAAAACAGGGGTCTAAAGAGGATATTCTGTTCCTGGAATTGCCTGCTCCTCCTGGTTGGAACAAAAAGTTTCTACCCAAGTTAGATGGGATCACTAAGAAAAATGAAATCATCTTCATAGCTCCTACAGGGGAGGCGATCCATAACAAAAGGCAGCTGGATCAGTACTTGAAATCACATCCAGGTAATCCAGCATCTTCTGAGTTTGATTGGCGTACTGGTGAAACGCCTAGAAGATCAGCTAGAATTAGTGAGAAGGCAAAGGCAACTCCCCCCTCACCTCAAATTGAACGACGTAAGAAACGAACACGAAAACAAGCTCTTTCGAAAAAGGTTGAGGTTAAAGAGACAGTTGTTGTCCCATACGGTTTGGAGGAGGTAGGAGTTCATAAGGAAGACGAGACCAATGTCGATAGCGAGGTGAAAGAAATACACGAGGAGGAAAAGTATGAAAATAGAAAACTAGAAGATGAGAATGGAAAAGCTGAAACCACCCCCACCCCTGCCGAAATGGCTGAAGAGGGGTGGCGAATTGATGGCGATGAATGGGAGAAGCTTGCTAAAACGAAGCAGGGAAGTGAGGGTTCTGAGGATGCAAGAAAGGAAAATCAAAATTTGGAAGGAACAAATGGGGAAGAGAAGGTTCAACTTCAAAATGATGCAAAGGAATCCATTTCAGAAGAAATAACAGCTGAAGTTCAAAGAAACAACCAAGACGAACTTAGTGTTCCACAAAGAAGATGA

Coding sequence (CDS)

ATGGCGAGCACACTGGAAAAACAGGGGTCTAAAGAGGATATTCTGTTCCTGGAATTGCCTGCTCCTCCTGGTTGGAACAAAAAGTTTCTACCCAAGTTAGATGGGATCACTAAGAAAAATGAAATCATCTTCATAGCTCCTACAGGGGAGGCGATCCATAACAAAAGGCAGCTGGATCAGTACTTGAAATCACATCCAGGTAATCCAGCATCTTCTGAGTTTGATTGGCGTACTGGTGAAACGCCTAGAAGATCAGCTAGAATTAGTGAGAAGGCAAAGGCAACTCCCCCCTCACCTCAAATTGAACGACGTAAGAAACGAACACGAAAACAAGCTCTTTCGAAAAAGGTTGAGGTTAAAGAGACAGTTGTTGTCCCATACGGTTTGGAGGAGGTAGGAGTTCATAAGGAAGACGAGACCAATGTCGATAGCGAGGTGAAAGAAATACACGAGGAGGAAAAGTATGAAAATAGAAAACTAGAAGATGAGAATGGAAAAGCTGAAACCACCCCCACCCCTGCCGAAATGGCTGAAGAGGGGTGGCGAATTGATGGCGATGAATGGGAGAAGCTTGCTAAAACGAAGCAGGGAAGTGAGGGTTCTGAGGATGCAAGAAAGGAAAATCAAAATTTGGAAGGAACAAATGGGGAAGAGAAGGTTCAACTTCAAAATGATGCAAAGGAATCCATTTCAGAAGAAATAACAGCTGAAGTTCAAAGAAACAACCAAGACGAACTTAGTGTTCCACAAAGAAGATGA

Homology

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BLAST of CSPIUnG00210 vs. Swiss-Prot
Match: MBD10_ARATH (Methyl-CpG-binding domain-containing protein 10 OS=Arabidopsis thaliana GN=MBD10 PE=1 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.4e-27
Identity = 92/234 (39.32%), Postives = 133/234 (56.84%), Query Frame = 1


Query: 12  EDILFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEAIHNKRQLDQYLKSHPGNPAS 71
           ++++ +ELPAP  W K F PK  G  +K EI+F+APTGE I +++QL+QYLK+HPGNP  
Sbjct: 5   DELVSIELPAPASWKKLFYPKRAGTPRKTEIVFVAPTGEEISSRKQLEQYLKAHPGNPVI 64

Query: 72  SEFDWRTGETPRRSARISEKAKATPPSPQIERRKKRTRKQALSKK-----VEVKETVVVP 131
           SEF+W TGETPRRS+RIS+K KAT P+P  E   K+ R+ +L+KK      E  E   V 
Sbjct: 65  SEFEWTTGETPRRSSRISQKVKATTPTPDKEPLLKK-RRSSLTKKDNKEAAEKNEEAAVK 124

Query: 132 YGLEEVGVHKEDETNVDSEVKEIHEEEKYENRKLEDENGKAETTPTPAEMAEEGWRIDGD 191
              E + V K+ +T      KE  +E   E  + E EN + E   T AE   +       
Sbjct: 125 ---ENMDVDKDGKTENAEAEKEKEKEGVTEIAEAEKENNEGE--KTEAEKVNK------- 184

Query: 192 EWEKLAKTKQGSEGSEDARKENQNLEGTNGEEKVQLQNDAKESISEEITAEVQR 241
           E EK    K+G     +A KE +  +     ++ ++  D KES+ E  T+E+++
Sbjct: 185 EGEKTEAGKEGQTEIAEAEKEKEGEKAEAENKEAEVVRDKKESM-EVDTSELEK 224

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BLAST of CSPIUnG00210 vs. Swiss-Prot
Match: MBD11_ARATH (Methyl-CpG-binding domain-containing protein 11 OS=Arabidopsis thaliana GN=MBD11 PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.8e-27
Identity = 98/244 (40.16%), Postives = 130/244 (53.28%), Query Frame = 1


Query: 9   GSKEDILFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEAIHNKRQLDQYLKSHPGN 68
           G +E+++ +ELPAP  W K F P   G  KK E++F+APTGE I N++QL+QYLKSHPGN
Sbjct: 2   GGEEEVVSVELPAPSSWKKLFYPNKVGSVKKTEVVFVAPTGEEISNRKQLEQYLKSHPGN 61

Query: 69  PASSEFDWRTGETPRRSARISEKAKATPPSPQIERRKKRTR-KQALSKKVEVKETVVVPY 128
           PA +EFDW T  TPRRSARISEK KAT PSP  E  KKR R K  +SKK    E      
Sbjct: 62  PAIAEFDWTTSGTPRRSARISEKTKAT-PSPDKEPPKKRGRTKSPVSKKDAEGEK--SEG 121

Query: 129 GLEEVGVHKEDETNVDSEVKE----IHEEEKYENRKLED--ENGKAETTPTPAEMAEEGW 188
           G EE    K+ E N    + E      +    E  ++ D  EN  AE TP  A + EEG 
Sbjct: 122 GGEENSHVKDTEMNPPEGIAENENVTDKNGSGETERVNDAKENIVAEETPNAAPVQEEGE 181

Query: 189 RIDGDEWEKLAKTKQGSEGSEDARKENQNLEGTNGEEKVQLQNDAKESISEEITAEVQRN 246
            +     EK   +        D  K+  ++E    +  V ++    E+  E+  +E +  
Sbjct: 182 SMK----EKALDSVDDKSKETDKEKDTGSIE----KNSVDVEKKTVEASDEKKNSEAETR 234

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BLAST of CSPIUnG00210 vs. TrEMBL
Match: F6HHA3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g05580 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 2.8e-40
Identity = 116/230 (50.43%), Postives = 151/230 (65.65%), Query Frame = 1


Query: 1   MASTLEKQGSKEDILFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEAIHNKRQLDQ 60
           MAS++EK    ++++ LELPAPPGW KKF+PK     KKNEIIF +PTGE I++KRQL+Q
Sbjct: 1   MASSVEK----DEVVSLELPAPPGWKKKFMPKRGLTPKKNEIIFTSPTGEEINSKRQLEQ 60

Query: 61  YLKSHPGNPASSEFDWRTGETPRRSARISEKAKATPPSPQIERRKKRTRKQALSKKVEVK 120
           YLKSHPG PA  EFDW TGETPRRSARISEKAKATPP  ++E  KKR+RK + SKK + K
Sbjct: 61  YLKSHPGGPAIQEFDWGTGETPRRSARISEKAKATPPR-ELEPAKKRSRKSSASKK-DNK 120

Query: 121 ETVVVPYGLEEVGVH----KEDETNVDSEV-KEIHEEEKYENR-KLEDENGKAETTPTPA 180
           ET  +P   E   VH    K+ E N ++E+ K++  E   E + K ED N K E  P   
Sbjct: 121 ETETIPDETETKEVHMQEAKKTEDNAEAEIQKDVVNENLIETKDKAEDVNTKTEEAPPEG 180

Query: 181 EMAEEGWRI--DGDEWEKLAKTKQGSEG--SEDARKENQNLEGTNGEEKV 221
              E+  +I  D +E +K A+ + G +G  SE A+ E ++ EGT  +E V
Sbjct: 181 TQVEQDVKIPDDAEEGKKNAEKEPGEKGGDSEVAQNEKESTEGTEVQENV 224

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BLAST of CSPIUnG00210 vs. TrEMBL
Match: A0A061GPN0_THECC (Methyl-CPG-binding domain 10, putative isoform 1 OS=Theobroma cacao GN=TCM_038107 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.3e-37
Identity = 120/275 (43.64%), Postives = 161/275 (58.55%), Query Frame = 1


Query: 1   MASTLEK---QGSKEDILFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEAIHNKRQ 60
           MAS++EK   +G+KED++ LELPAPPGW KKF+PK  G  KKNEI+F APTGE I N++Q
Sbjct: 1   MASSVEKKETEGAKEDVVCLELPAPPGWKKKFMPKKGGTPKKNEILFTAPTGEEISNRKQ 60

Query: 61  LDQYLKSHPGNPASSEFDWRTGETPRRSARISEKAKATPPSPQIERRKKRTRKQALSKKV 120
           L+QYLK+HPG PA S FDW TGETPRRSARISEK KA  P+P+ E  KKR RK + SKK 
Sbjct: 61  LEQYLKAHPGGPAVSVFDWGTGETPRRSARISEKVKAM-PTPESEPPKKRGRKSSASKK- 120

Query: 121 EVKETVVVPYGLEEV------GVHKEDETNVDSEVKEIHEEEKYENR-KLEDENGKAETT 180
           + KET   P G EE          K ++ N     K   +E + EN+ K +D +GK E+T
Sbjct: 121 DNKETETGPEGTEETKDDHMQEAEKSEKDNEGEAGKVAVQENENENKNKTQDGDGKTEST 180

Query: 181 PTPAEMAEEGWRIDGDEW---------EKLAKTKQG--SEGSEDARKENQNLEGTNGEEK 240
           P   ++ E+       E+         +KL   K G  ++ S  A KE +  EGT  + K
Sbjct: 181 PQEVKLGEDANVSTNVEYGTESADAASKKLKNPKDGVEADASGVAEKEKEGSEGTASQGK 240

Query: 241 VQ---------LQNDAKESISEEITAEVQRNNQDE 246
           V+         L++  +E +   IT E++   + E
Sbjct: 241 VEQPVAEAEKGLRSGEQEKLDIGITGEIKNKVEVE 273

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BLAST of CSPIUnG00210 vs. TrEMBL
Match: M5W9H0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008789mg PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 8.5e-37
Identity = 118/265 (44.53%), Postives = 156/265 (58.87%), Query Frame = 1


Query: 1   MASTLEKQGSKEDILFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEAIHNKRQLDQ 60
           MAS++EK+G  E+++ LELPAP GW KKFLPK  G  KKNEIIF APTGE I NKRQL+Q
Sbjct: 1   MASSVEKEG--EEVVSLELPAPSGWVKKFLPKQSGTPKKNEIIFTAPTGEEITNKRQLEQ 60

Query: 61  YLKSHPGNPASSEFDWRTGETPRRSARISEKAKATPPSPQIERRKKRTRKQALSKKVEVK 120
           YLK+HPG PA SEFDW TGETPRRSARISEKAKATPP P+ E  KKR+RK   +KK + K
Sbjct: 61  YLKAHPGGPAVSEFDWSTGETPRRSARISEKAKATPP-PESEPPKKRSRKSTSAKK-DSK 120

Query: 121 ETVVVPYGLEE-----VGVHKEDETNVDSEVKEIHEEEKYENRKLEDENGKAETTPTPAE 180
           E    P G EE     V   ++ E   D+E+++   ++  +  K  D + K E       
Sbjct: 121 EKQAGPEGAEETKISDVQAAEKAEKVEDTEMEKDDVKDNQDEEKAPDADTKTEVAQPEET 180

Query: 181 MAEEGWRIDGDEWEKLAKTKQGSEGSEDA---------RKENQNLEGTNGEEK---VQLQ 240
             E+   I GD  E    +K G E S+ +         + E +N EG   EEK    Q++
Sbjct: 181 KVEQEANIPGDAEECKKTSKAGPEDSKASIDGGSGFGKQTEKENAEGEKVEEKGEQPQVE 240

Query: 241 NDAKESISEEITAEVQRNNQDELSV 249
              +E   ++  A++   ++D+  V
Sbjct: 241 VGKEEETGDQGKAKIAIVDEDKHEV 261

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BLAST of CSPIUnG00210 vs. TrEMBL
Match: A0A067KJI3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13350 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 8.0e-35
Identity = 107/239 (44.77%), Postives = 144/239 (60.25%), Query Frame = 1


Query: 1   MASTLEKQGS-KEDILFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEAIHNKRQLD 60
           MA+++EK+   KE+   LELPAPPGW KKF+PK  G  KKNEIIF APTGE I  +RQL+
Sbjct: 1   MANSVEKESLLKEEDFSLELPAPPGWKKKFMPKKSGTLKKNEIIFTAPTGEEITTRRQLE 60

Query: 61  QYLKSHPGNPASSEFDWRTGETPRRSARISEKAKATPPSPQIERRKKRTRKQALSKKVEV 120
           QYLK HPG PA+S+FDW TGETPRRS RISEKAKA PP    E  KKRTRK + SKK E 
Sbjct: 61  QYLKVHPGGPAASDFDWGTGETPRRSTRISEKAKAAPPRDS-EPPKKRTRKSSASKK-EN 120

Query: 121 KETVVVPYG--------LEEVGVHKEDETNVDSEVKEIHEEEKYENRKLEDENGKAETTP 180
           KET + P G        ++E G  ++D+  V    +   E ++    K +D + K E  P
Sbjct: 121 KETALAPEGAEDMKEIHMQEAGKAEKDDAEVKGRKENAKENQEENKDKPQDTDAKTEVVP 180

Query: 181 TP----AEMAEEGWRIDGDEWE-KLAKTKQGSEGSEDARKENQNLEGTNGEEKVQLQND 226
                  E A++    +  + E K A TK+ SE +++   E++ ++G + +  V   N+
Sbjct: 181 NEETKVGEDADKSKESEEGKGEVKPAPTKERSENNKE-NVEDEKVQGKDEQPHVAAPNE 236

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BLAST of CSPIUnG00210 vs. TrEMBL
Match: V4SIR1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025929mg PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.8e-34
Identity = 106/252 (42.06%), Postives = 151/252 (59.92%), Query Frame = 1


Query: 1   MASTLEKQGSKEDILFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEAIHNKRQLDQ 60
           ++ T E+  SK +++ +ELPAPP W K +LPK  G  +K+EI+FIAPTGE +HN++QL+Q
Sbjct: 31  LSFTGEQMESKGEVISVELPAPPAWKKMYLPKKGGTPRKSEIMFIAPTGEELHNRKQLEQ 90

Query: 61  YLKSHPGNPASSEFDWRTGETPRRSARISEKAKATPPSPQIERRKKRTRKQALSKKVEVK 120
           YLKSHPGNPA +EFDW TGETPRRS+RISEKAKAT P+P+ E  KKR R+   + K + K
Sbjct: 91  YLKSHPGNPAITEFDWGTGETPRRSSRISEKAKAT-PTPEKEPPKKRGRRSTSASKKDNK 150

Query: 121 ETVVVPYGLEEVGVHKEDETNVDSEVKEIHEEEKYENRKLEDENGKAETTPTPAEMAEEG 180
           ET        E   + E E  V+ +V      E+ E +K E E GK  +  T        
Sbjct: 151 ET--------EAPENAEREKEVEMQV-----AEETEKKKAEAEVGKDVSVETQVGK---- 210

Query: 181 WRIDGDEWEKLAKTKQGSEGSEDARKENQNLEGTNGEEKVQLQNDAKESIS----EEITA 240
              +G+  EK   T+      E+A  E QN +  +G E+ +  N+ +E+ S    EE  A
Sbjct: 211 ---EGETQEKAEVTENKDANMEEAGPE-QNNKAQDGAEETKNSNEEREAASVKENEETAA 260

Query: 241 EVQRNNQDELSV 249
           EV +N ++++ +
Sbjct: 271 EVTQNEKEKVEI 260

[Close]

BLAST of CSPIUnG00210 vs. TAIR10
Match: AT1G15340.1 (AT1G15340.1 methyl-CPG-binding domain 10)

HSP 1 Score: 124.8 bits (312), Expect = 7.6e-29
Identity = 92/234 (39.32%), Postives = 133/234 (56.84%), Query Frame = 1


Query: 12  EDILFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEAIHNKRQLDQYLKSHPGNPAS 71
           ++++ +ELPAP  W K F PK  G  +K EI+F+APTGE I +++QL+QYLK+HPGNP  
Sbjct: 5   DELVSIELPAPASWKKLFYPKRAGTPRKTEIVFVAPTGEEISSRKQLEQYLKAHPGNPVI 64

Query: 72  SEFDWRTGETPRRSARISEKAKATPPSPQIERRKKRTRKQALSKK-----VEVKETVVVP 131
           SEF+W TGETPRRS+RIS+K KAT P+P  E   K+ R+ +L+KK      E  E   V 
Sbjct: 65  SEFEWTTGETPRRSSRISQKVKATTPTPDKEPLLKK-RRSSLTKKDNKEAAEKNEEAAVK 124

Query: 132 YGLEEVGVHKEDETNVDSEVKEIHEEEKYENRKLEDENGKAETTPTPAEMAEEGWRIDGD 191
              E + V K+ +T      KE  +E   E  + E EN + E   T AE   +       
Sbjct: 125 ---ENMDVDKDGKTENAEAEKEKEKEGVTEIAEAEKENNEGE--KTEAEKVNK------- 184

Query: 192 EWEKLAKTKQGSEGSEDARKENQNLEGTNGEEKVQLQNDAKESISEEITAEVQR 241
           E EK    K+G     +A KE +  +     ++ ++  D KES+ E  T+E+++
Sbjct: 185 EGEKTEAGKEGQTEIAEAEKEKEGEKAEAENKEAEVVRDKKESM-EVDTSELEK 224

[Close]

BLAST of CSPIUnG00210 vs. TAIR10
Match: AT3G15790.1 (AT3G15790.1 methyl-CPG-binding domain 11)

HSP 1 Score: 124.4 bits (311), Expect = 1.0e-28
Identity = 98/244 (40.16%), Postives = 130/244 (53.28%), Query Frame = 1


Query: 9   GSKEDILFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEAIHNKRQLDQYLKSHPGN 68
           G +E+++ +ELPAP  W K F P   G  KK E++F+APTGE I N++QL+QYLKSHPGN
Sbjct: 2   GGEEEVVSVELPAPSSWKKLFYPNKVGSVKKTEVVFVAPTGEEISNRKQLEQYLKSHPGN 61

Query: 69  PASSEFDWRTGETPRRSARISEKAKATPPSPQIERRKKRTR-KQALSKKVEVKETVVVPY 128
           PA +EFDW T  TPRRSARISEK KAT PSP  E  KKR R K  +SKK    E      
Sbjct: 62  PAIAEFDWTTSGTPRRSARISEKTKAT-PSPDKEPPKKRGRTKSPVSKKDAEGEK--SEG 121

Query: 129 GLEEVGVHKEDETNVDSEVKE----IHEEEKYENRKLED--ENGKAETTPTPAEMAEEGW 188
           G EE    K+ E N    + E      +    E  ++ D  EN  AE TP  A + EEG 
Sbjct: 122 GGEENSHVKDTEMNPPEGIAENENVTDKNGSGETERVNDAKENIVAEETPNAAPVQEEGE 181

Query: 189 RIDGDEWEKLAKTKQGSEGSEDARKENQNLEGTNGEEKVQLQNDAKESISEEITAEVQRN 246
            +     EK   +        D  K+  ++E    +  V ++    E+  E+  +E +  
Sbjct: 182 SMK----EKALDSVDDKSKETDKEKDTGSIE----KNSVDVEKKTVEASDEKKNSEAETR 234

[Close]

BLAST of CSPIUnG00210 vs. NCBI nr
Match: gi|449464628|ref|XP_004150031.1| (PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Cucumis sativus])

HSP 1 Score: 478.8 bits (1231), Expect = 5.9e-132
Identity = 251/252 (99.60%), Postives = 251/252 (99.60%), Query Frame = 1


Query: 1   MASTLEKQGSKEDILFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEAIHNKRQLDQ 60
           MASTLEKQGSKE ILFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEAIHNKRQLDQ
Sbjct: 1   MASTLEKQGSKEGILFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEAIHNKRQLDQ 60

Query: 61  YLKSHPGNPASSEFDWRTGETPRRSARISEKAKATPPSPQIERRKKRTRKQALSKKVEVK 120
           YLKSHPGNPASSEFDWRTGETPRRSARISEKAKATPPSPQIERRKKRTRKQALSKKVEVK
Sbjct: 61  YLKSHPGNPASSEFDWRTGETPRRSARISEKAKATPPSPQIERRKKRTRKQALSKKVEVK 120

Query: 121 ETVVVPYGLEEVGVHKEDETNVDSEVKEIHEEEKYENRKLEDENGKAETTPTPAEMAEEG 180
           ETVVVPYGLEEVGVHKEDETNVDSEVKEIHEEEKYENRKLEDENGKAETTPTPAEMAEEG
Sbjct: 121 ETVVVPYGLEEVGVHKEDETNVDSEVKEIHEEEKYENRKLEDENGKAETTPTPAEMAEEG 180

Query: 181 WRIDGDEWEKLAKTKQGSEGSEDARKENQNLEGTNGEEKVQLQNDAKESISEEITAEVQR 240
           WRIDGDEWEKLAKTKQGSEGSEDARKENQNLEGTNGEEKVQLQNDAKESISEEITAEVQR
Sbjct: 181 WRIDGDEWEKLAKTKQGSEGSEDARKENQNLEGTNGEEKVQLQNDAKESISEEITAEVQR 240

Query: 241 NNQDELSVPQRR 253
           NNQDELSVPQRR
Sbjct: 241 NNQDELSVPQRR 252

[Close]

BLAST of CSPIUnG00210 vs. NCBI nr
Match: gi|659086527|ref|XP_008443980.1| (PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Cucumis melo])

HSP 1 Score: 358.2 bits (918), Expect = 1.2e-95
Identity = 193/217 (88.94%), Postives = 196/217 (90.32%), Query Frame = 1


Query: 1   MASTLEKQGSKEDILFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEAIHNKRQLDQ 60
           MASTLEKQGSKED+LFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGE IHNKRQLDQ
Sbjct: 1   MASTLEKQGSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHNKRQLDQ 60

Query: 61  YLKSHPGNPASSEFDWRTGETPRRSARISEKAKATPPSPQIERRKKRTRKQALSKKVEVK 120
           YLKSHPGN ASSEFDW TGETPRRSARISEKAKATPPSP IER KKRTRKQAL KK E K
Sbjct: 61  YLKSHPGNLASSEFDWGTGETPRRSARISEKAKATPPSPHIERPKKRTRKQALLKKFEDK 120

Query: 121 ETVVVPYGLEEVGVHKEDETNVDSEVKEIHEEEKYENRKLEDENGKAETTPTPAEMAEEG 180
           ETVVVP G EE GVHKEDETNVDSEVKEI  E KYENRKLEDE  KAETTPTPAEMAEEG
Sbjct: 121 ETVVVPDGFEEAGVHKEDETNVDSEVKEIQVEGKYENRKLEDEKLKAETTPTPAEMAEEG 180

Query: 181 WRIDGDEWEKLAKTKQGSEGSEDARKENQNLEGTNGE 218
            + D DE +KLAKTKQGSEGSEDARKENQNLEGT GE
Sbjct: 181 RQSDDDECKKLAKTKQGSEGSEDARKENQNLEGTKGE 217

[Close]

BLAST of CSPIUnG00210 vs. NCBI nr
Match: gi|225445563|ref|XP_002285323.1| (PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Vitis vinifera])

HSP 1 Score: 173.7 bits (439), Expect = 4.1e-40
Identity = 116/230 (50.43%), Postives = 151/230 (65.65%), Query Frame = 1


Query: 1   MASTLEKQGSKEDILFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEAIHNKRQLDQ 60
           MAS++EK    ++++ LELPAPPGW KKF+PK     KKNEIIF +PTGE I++KRQL+Q
Sbjct: 1   MASSVEK----DEVVSLELPAPPGWKKKFMPKRGLTPKKNEIIFTSPTGEEINSKRQLEQ 60

Query: 61  YLKSHPGNPASSEFDWRTGETPRRSARISEKAKATPPSPQIERRKKRTRKQALSKKVEVK 120
           YLKSHPG PA  EFDW TGETPRRSARISEKAKATPP  ++E  KKR+RK + SKK + K
Sbjct: 61  YLKSHPGGPAIQEFDWGTGETPRRSARISEKAKATPPR-ELEPAKKRSRKSSASKK-DNK 120

Query: 121 ETVVVPYGLEEVGVH----KEDETNVDSEV-KEIHEEEKYENR-KLEDENGKAETTPTPA 180
           ET  +P   E   VH    K+ E N ++E+ K++  E   E + K ED N K E  P   
Sbjct: 121 ETETIPDETETKEVHMQEAKKTEDNAEAEIQKDVVNENLIETKDKAEDVNTKTEEAPPEG 180

Query: 181 EMAEEGWRI--DGDEWEKLAKTKQGSEG--SEDARKENQNLEGTNGEEKV 221
              E+  +I  D +E +K A+ + G +G  SE A+ E ++ EGT  +E V
Sbjct: 181 TQVEQDVKIPDDAEEGKKNAEKEPGEKGGDSEVAQNEKESTEGTEVQENV 224

[Close]

BLAST of CSPIUnG00210 vs. NCBI nr
Match: gi|1009167086|ref|XP_015901933.1| (PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Ziziphus jujuba])

HSP 1 Score: 167.9 bits (424), Expect = 2.2e-38
Identity = 121/265 (45.66%), Postives = 157/265 (59.25%), Query Frame = 1


Query: 1   MASTLEKQGSKEDILFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEAIHNKRQLDQ 60
           MAS++ K+ +KED+  LELPAPPGW KKFLPK  G  KKNEIIF APTGE I N+RQL+Q
Sbjct: 1   MASSVGKEAAKEDVFSLELPAPPGWKKKFLPKQGGTPKKNEIIFTAPTGEEISNRRQLEQ 60

Query: 61  YLKSHPGNPASSEFDWRTGETPRRSARISEKAKATPPSPQIERRKKRTRKQALSKKVEVK 120
           YLK+HPG PA SEFDW TGETPRRSARISEKAKAT P+P+ E  KKR+RK + SKK + K
Sbjct: 61  YLKAHPGGPAVSEFDWGTGETPRRSARISEKAKAT-PTPESEPPKKRSRKSSASKK-DGK 120

Query: 121 ETVVVPYGLEE---VGVHKEDETNVDSEVKEIHEEEKYENRKLEDENGKAETTPTPAEMA 180
           E      G EE     + ++ +T  DSE  +  ++   EN+  + ++   +    PA  A
Sbjct: 121 EKEAASGGTEESKVTDIQEDQKTEKDSEDADAKKDVVKENQDEKAQDAGTKIEAAPAGEA 180

Query: 181 EEGWRID-GDEWEKLAKTKQG-SEGSEDARK---------ENQNLEGTNGEEKVQLQND- 240
             G   D  +  EK  +++QG SEG    +K         E+ N E     EKV+ Q D 
Sbjct: 181 AAGKESDLPNNSEKATESEQGNSEGITVGKKVEVSGIIQNESGNTEAAKLPEKVEQQQDE 240

Query: 241 ------AKESISEEITAEVQRNNQD 245
                 A E I  +  A+ +RN  +
Sbjct: 241 TEKNIVAGEQIKVDTNADKKRNETE 263

[Close]

BLAST of CSPIUnG00210 vs. NCBI nr
Match: gi|694374144|ref|XP_009364060.1| (PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Pyrus x bretschneideri])

HSP 1 Score: 167.2 bits (422), Expect = 3.8e-38
Identity = 109/243 (44.86%), Postives = 152/243 (62.55%), Query Frame = 1


Query: 1   MASTLEKQGSKEDILFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEAIHNKRQLDQ 60
           MAS++EK+G KE+++ LELPAP GW KKFLP+  G  KKNEI+F APTGE I +KRQL+Q
Sbjct: 1   MASSVEKEGGKEEVVSLELPAPSGWVKKFLPRQSGTPKKNEIVFTAPTGEEITSKRQLEQ 60

Query: 61  YLKSHPGNPASSEFDWRTGETPRRSARISEKAKATPPSPQIERRKKRTRKQALSKKVEVK 120
           YLK+HPG PA+SEFDW TGETPRRSARISEKAKATPP  + E  KKR+RK   +KK E K
Sbjct: 61  YLKAHPGGPAASEFDWGTGETPRRSARISEKAKATPPPIESEPPKKRSRKSTSAKK-EDK 120

Query: 121 ETVVVPYGLEEVGV---------HKEDETNVDS-EVKEIHEEEK-----YENRKLEDENG 180
           E    P G EE  +          K+ +T ++  +VKE  +EEK      E + L++ N 
Sbjct: 121 EQEAAPEGAEETKISDLQDAGKAEKDADTEMEKVDVKENQDEEKAPAPPEEAKVLQEVNV 180

Query: 181 KAE-TTPTPAEMAEEGWRIDGDEWEKLAKTKQGSEGSEDARKENQNLEGTNGEEKVQLQN 228
             +   P  ++ + +G  ++G++ E +       +   +A KE + + G  G+  + + +
Sbjct: 181 PGDAAAPGDSKASVDGKEVEGEKEETV------KQPPVEAGKEEEEVAGDQGKPGIAIAD 236

The following BLAST results are available for this feature:

BLAST of CSPIUnG00210 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MBD10_ARATH	1.4e-27	39.32	Methyl-CpG-binding domain-containing protein 10 OS=Arabidopsis thaliana GN=MBD10...	[more]
MBD11_ARATH	1.8e-27	40.16	Methyl-CpG-binding domain-containing protein 11 OS=Arabidopsis thaliana GN=MBD11...	[more]

BLAST of CSPIUnG00210 vs. TrEMBL


Match Name	E-value	Identity	Description
F6HHA3_VITVI	2.8e-40	50.43	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g05580 PE=4 SV=...	[more]
A0A061GPN0_THECC	1.3e-37	43.64	Methyl-CPG-binding domain 10, putative isoform 1 OS=Theobroma cacao GN=TCM_03810...	[more]
M5W9H0_PRUPE	8.5e-37	44.53	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008789mg PE=4 SV=1	[more]
A0A067KJI3_JATCU	8.0e-35	44.77	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13350 PE=4 SV=1	[more]
V4SIR1_9ROSI	1.8e-34	42.06	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025929mg PE=4 SV=1	[more]

BLAST of CSPIUnG00210 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G15340.1	7.6e-29	39.32	methyl-CPG-binding domain 10	[more]
AT3G15790.1	1.0e-28	40.16	methyl-CPG-binding domain 11	[more]

BLAST of CSPIUnG00210 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449464628\|ref\|XP_004150031.1\|	5.9e-132	99.60	PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Cucumis sativus...	[more]
gi\|659086527\|ref\|XP_008443980.1\|	1.2e-95	88.94	PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Cucumis melo]	[more]
gi\|225445563\|ref\|XP_002285323.1\|	4.1e-40	50.43	PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Vitis vin...	[more]
gi\|1009167086\|ref\|XP_015901933.1\|	2.2e-38	45.66	PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Ziziphus jujuba...	[more]
gi\|694374144\|ref\|XP_009364060.1\|	3.8e-38	44.86	PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Pyrus x bretsch...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001739	Methyl_CpG_DNA-bd
IPR016177	DNA-bd_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPIUnG00210.1	CSPIUnG00210.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001739	Methyl-CpG DNA binding	GENE3D	G3DSA:3.30.890.10		coord: 12..107 score: 1.5
IPR001739	Methyl-CpG DNA binding	PFAM	PF01429	MBD	coord: 18..81 score: 5.5
IPR001739	Methyl-CpG DNA binding	PROFILE	PS50982	MBD	coord: 11..81 score: 12
IPR016177	DNA-binding domain	unknown	SSF54171	DNA-binding domain	coord: 13..109 score: 4.58
None	No IPR available	unknown	Coil	Coil	coord: 150..170 scor
None	No IPR available	PANTHER	PTHR33729	FAMILY NOT NAMED	coord: 1..246 score: 7.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPIUnG00210	Cla012225	Watermelon (97103) v1	cpiwmB637
CSPIUnG00210	CsaUNG026610	Cucumber (Chinese Long) v2	cpicuB362
CSPIUnG00210	Csa2G006830	Cucumber (Chinese Long) v2	cpicuB360
CSPIUnG00210	MELO3C010329	Melon (DHL92) v3.5.1	cpimeB578
CSPIUnG00210	ClCG06G011310	Watermelon (Charleston Gray)	cpiwcgB604
CSPIUnG00210	ClCG11G003150	Watermelon (Charleston Gray)	cpiwcgB603
CSPIUnG00210	Lsi06G009820	Bottle gourd (USVL1VR-Ls)	cpilsiB556
CSPIUnG00210	Lsi11G003270	Bottle gourd (USVL1VR-Ls)	cpilsiB555
CSPIUnG00210	MELO3C010329.2	Melon (DHL92) v3.6.1	cpimedB563
CSPIUnG00210	CsaV3_2G002970	Cucumber (Chinese Long) v3	cpicucB422
CSPIUnG00210	CsaV3_1G030350	Cucumber (Chinese Long) v3	cpicucB421
CSPIUnG00210	Cla97C11G209600	Watermelon (97103) v2	cpiwmbB604
CSPIUnG00210	Cla97C06G120480	Watermelon (97103) v2	cpiwmbB605
CSPIUnG00210	Bhi02G000814	Wax gourd	cpiwgoB727
CSPIUnG00210	Cucsa.295070	Cucumber (Gy14) v1	cgycpiB445
CSPIUnG00210	Cucsa.132180	Cucumber (Gy14) v1	cgycpiB191
CSPIUnG00210	CmaCh05G012860	Cucurbita maxima (Rimu)	cmacpiB823
CSPIUnG00210	CmoCh12G012290	Cucurbita moschata (Rifu)	cmocpiB191
CSPIUnG00210	CmoCh05G013070	Cucurbita moschata (Rifu)	cmocpiB809
CSPIUnG00210	CsGy1G019000	Cucumber (Gy14) v2	cgybcpiB048
CSPIUnG00210	Carg10913	Silver-seed gourd	carcpiB0607

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CSPIUnG00210	CSPI02G01800	Wild cucumber (PI 183967)	cpicpiB099

The following block(s) are covering this gene:


Gene	Organism	Block
CSPIUnG00210	Cucurbita maxima (Rimu)	cmacpiB083
CSPIUnG00210	Cucurbita moschata (Rifu)	cmocpiB077
CSPIUnG00210	Cucurbita pepo (Zucchini)	cpecpiB378
CSPIUnG00210	Silver-seed gourd	carcpiB0147