CsGy1G015670 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G015670
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionER membrane protein complex subunit 3
LocationChr1 : 11611203 .. 11613514 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGAGGATCTAGTGCTCGACACGGCCATCAGAGATTGGGTGCTGATTCCGCTCTCCGTTGTCATGGTCCTCATTGGAGTTCTCCGCTACTTTGTCTCCAAGCTCATGCGCTCCTCTCCAGTCCCCGATGCCAAAGTCGTACGAGAAGGGTAAATTTTGATTCCTAATCTTCATCATTCGTGACCTTTCATCTTGTTTGTTCCTCACCCAGTTTTTAATTCTGGGTTTCAGGCAAATTGTACTTAGGGCACGGAATTTACGTTCAGCTGCTAATTTTATTCCCCATAAGTCGTTTCGTTCCCGCAGAATTTATTACGGCAATGAGGTTCTTTCCACCCTCTTTTTTTCCCAATGTAGTATGCGATGTATTTTATATCAAAAGGAATGCGTTATGTGATGTGAGTCTGTTATGACATACCAAATTCGCTTCATTAAACATTTTTGGGGAGTAATCGTTTTAGAATATATGTCTATGGTACTTCTTTAATGGCATAAGGTGTAGAAGGTTTAGTTTCTCTCTCGGGATTCAGTTTTGGGTATCAAGTGCAGTCAGAACTCTTATGGGAGCTCTTTATTATTTCTGTTAGTTTTCTAAACTCAGTTTAGTCAAGTTGTTCATCTGTTAGTCATTTTTGTTTGTGATTGATTTATTGAAAATTTGTTACTGCTTCTCCTCTTCAAAGCTTGTAAGTTCTCTGTTGATATCTGAGACTTGATTCAATAATTCAATTTTCATTTCATGGTATCAGAGTAAGCTTTATACAGTTTATGAGATAGGAAACTTATTTACTCTACCATGGGAAAACAAGCACTAAGTTACTAAAGCAGCATTCAGGGTTCGTCATGTAGAGTATTTATGCACTTTCCATAAGGTTTTATAGGTTGTAACGTGTATGATTTATTTCATCCCTGACCATGGTGACATGTGGATGTCGTGTATTGTTTACCAATTTTGGGAATCCATGTCTGAGAATGGTTGCAATTAGATTGTATCTTTTATTTTAGAATGGTTTTGATGTAACTATGATGTTCTAAGTAGCACAGGAGGACAAAGAAACAATCTAATAACCTAGATATTCATATTCCACGTATGCAATTGGCAGGAAAATGGGCTGCTATATGTTCCCAAAGGCCAGGCCCAAAATGCACAAGCACAGATGTTTTCAGATCCAAATATGGCAATGGATATGATGAAGAAGAATCTCTCCATGATTATACCTCAGGTGACTATAGTTGCATGTTTGATGACTATTTTTCATTGATATCACCAGGAGTTCAATTATTTACATTTTTATTAATCCTTTTATGCTAGACTCTTACTTTTGCGTGGGTCAACTTTTTCTTCTCCGGATTTGTAGCAGGTGTGTTTTTCATACTACTGATGCTTTTAAATGCCTAAGGATGACCTTTCTGGTTGAGTGAATCTCCAAGTTATCTAGGTTTATAATTTCTATACTTTTTAGGCGTTAAATGGTATGACTATGTGCTGACACTCATTACGATTTTTAATACATGGGAAACTTTATAAAATTATTTACTATGTCTCTGCTGTTTCTCTCTCGGTCATTTTCTTTCATTTTTTGATAATCCTGTTGGGTATAACTGGTAGAAAAAGTTAACCTCAGGTATATTAACCTTGTGCATTTAAAGCTGTTTTTCTACCTGTTCAAGCATCTCCTTTTTTCTAAAACCCCCATTTTGTTTGCATCTAATGGTGTATTCTCTCCTTATCCTAGCAAAAATACCCTTTCCTCTGACTCAGAGGTTCCGGTCGATGTTACAGAATGGAATCGACTTGAGTACTGTGGATGTCAGCTATGTCAGTAGCCGTTCATGGTATTTTCCAAGATCAGTATTTAAAATTCTGGTGCATGAGTTAATGCCTTCTGAAGTTTTTTTCTGTGTGGTGGGGGGGGGGGGGGGGAGGAGTTTTGGTTGGATGATTATCGCTAATAGTTTTGGATTACATGTGCCAGGTACTTTCTAAATTTGTTTGGATTAAGAGGTTTATTCAGTCTCATTCTGGGCGAAGAAAATGGTTAGTCTTTCTGTACAACGATTGCATTTATTTTAACTGTTTAATGTATATATGGAATCTTTTTCACAATAAGCAGCATTTTGAAAGTTCCAGCTCTTATACTGTGAATTATGAGAAAGTAATTCTTGGTGCAGCAATGGATGATACACAGAGAATGATGCAAATGTCTGGTTTTGGCATGGACCCAACAAAGGTAAATATTGTTAGTCTTTACTGCATTGTATTTTGAACTTCTATCTTAATTTGCAGGTTGTCAAATAAGGCTGTTTAG

mRNA sequence

ATGGCGGAGGATCTAGTGCTCGACACGGCCATCAGAGATTGGGTGCTGATTCCGCTCTCCGTTGTCATGGTCCTCATTGGAGTTCTCCGCTACTTTGTCTCCAAGCTCATGCGCTCCTCTCCAGTCCCCGATGCCAAAGTCGTACGAGAAGGGCAAATTGTACTTAGGGCACGGAATTTACGTTCAGCTGCTAATTTTATTCCCCATAAGTCGTTTCGTTCCCGCAGAATTTATTACGGCAATGAGGAAAATGGGCTGCTATATGTTCCCAAAGGCCAGGCCCAAAATGCACAAGCACAGATGTTTTCAGATCCAAATATGGCAATGGATATGATGAAGAAGAATCTCTCCATGATTATACCTCAGAATGGAATCGACTTGAGTACTGTGGATGTCAGCTATGTCAGTAGCCGTTCATGGTTGTCAAATAAGGCTGTTTAG

Coding sequence (CDS)

ATGGCGGAGGATCTAGTGCTCGACACGGCCATCAGAGATTGGGTGCTGATTCCGCTCTCCGTTGTCATGGTCCTCATTGGAGTTCTCCGCTACTTTGTCTCCAAGCTCATGCGCTCCTCTCCAGTCCCCGATGCCAAAGTCGTACGAGAAGGGCAAATTGTACTTAGGGCACGGAATTTACGTTCAGCTGCTAATTTTATTCCCCATAAGTCGTTTCGTTCCCGCAGAATTTATTACGGCAATGAGGAAAATGGGCTGCTATATGTTCCCAAAGGCCAGGCCCAAAATGCACAAGCACAGATGTTTTCAGATCCAAATATGGCAATGGATATGATGAAGAAGAATCTCTCCATGATTATACCTCAGAATGGAATCGACTTGAGTACTGTGGATGTCAGCTATGTCAGTAGCCGTTCATGGTTGTCAAATAAGGCTGTTTAG

Protein sequence

MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPVPDAKVVREGQIVLRARNLRSAANFIPHKSFRSRRIYYGNEENGLLYVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQNGIDLSTVDVSYVSSRSWLSNKAV
Homology
[Close]
BLAST of CsGy1G015670 vs. NCBI nr
Match: XP_004139548.1 (PREDICTED: ER membrane protein complex subunit 3 [Cucumis sativus])

HSP 1 Score: 253.8 bits (647), Expect = 3.5e-64
Identity = 140/172 (81.40%), Postives = 140/172 (81.40%), Query Frame = 0 

Query: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPVPDAKVVREGQIVLRARNL 60
           MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPVPDAKVVREGQIVLRARNL
Sbjct: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPVPDAKVVREGQIVLRARNL 60

Query: 61  RSAANFIPHKSFRSRRIYYGNEENGLLYVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMII 120
           RSAANFIPHKSFRSRRIYYGNEENGLLYVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMII
Sbjct: 61  RSAANFIPHKSFRSRRIYYGNEENGLLYVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMII 120

Query: 121 P--------------------------------QNGIDLSTVDVSYVSSRSW 141
           P                                QNGIDLSTVDVSYVSSRSW
Sbjct: 121 PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 172

[Close]
BLAST of CsGy1G015670 vs. NCBI nr
Match: KGN65064.1 (hypothetical protein Csa_1G188170 [Cucumis sativus])

HSP 1 Score: 253.8 bits (647), Expect = 3.5e-64
Identity = 140/172 (81.40%), Postives = 140/172 (81.40%), Query Frame = 0 

Query: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPVPDAKVVREGQIVLRARNL 60
           MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPVPDAKVVREGQIVLRARNL
Sbjct: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPVPDAKVVREGQIVLRARNL 60

Query: 61  RSAANFIPHKSFRSRRIYYGNEENGLLYVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMII 120
           RSAANFIPHKSFRSRRIYYGNEENGLLYVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMII
Sbjct: 61  RSAANFIPHKSFRSRRIYYGNEENGLLYVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMII 120

Query: 121 P--------------------------------QNGIDLSTVDVSYVSSRSW 141
           P                                QNGIDLSTVDVSYVSSRSW
Sbjct: 121 PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 172

[Close]
BLAST of CsGy1G015670 vs. NCBI nr
Match: XP_008458952.1 (PREDICTED: ER membrane protein complex subunit 3 [Cucumis melo])

HSP 1 Score: 253.4 bits (646), Expect = 4.5e-64
Identity = 139/172 (80.81%), Postives = 140/172 (81.40%), Query Frame = 0 

Query: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPVPDAKVVREGQIVLRARNL 60
           MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPVPDAKVVREGQIVLRARNL
Sbjct: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPVPDAKVVREGQIVLRARNL 60

Query: 61  RSAANFIPHKSFRSRRIYYGNEENGLLYVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMII 120
           RSAANFIPHKSFRSRR+YYGNEENGLLYVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMII
Sbjct: 61  RSAANFIPHKSFRSRRVYYGNEENGLLYVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMII 120

Query: 121 P--------------------------------QNGIDLSTVDVSYVSSRSW 141
           P                                QNGIDLSTVDVSYVSSRSW
Sbjct: 121 PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 172

[Close]
BLAST of CsGy1G015670 vs. NCBI nr
Match: XP_022927570.1 (ER membrane protein complex subunit 3 [Cucurbita moschata])

HSP 1 Score: 248.8 bits (634), Expect = 1.1e-62
Identity = 137/172 (79.65%), Postives = 139/172 (80.81%), Query Frame = 0 

Query: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPVPDAKVVREGQIVLRARNL 60
           MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPVPDAKVVREGQIVLRARNL
Sbjct: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPVPDAKVVREGQIVLRARNL 60

Query: 61  RSAANFIPHKSFRSRRIYYGNEENGLLYVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMII 120
           RSAANFIP KSFRSRR+YYGNEENGLL+VPKGQAQNAQAQMFSDPNMAMDMMKKNLSMII
Sbjct: 61  RSAANFIPQKSFRSRRVYYGNEENGLLFVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMII 120

Query: 121 P--------------------------------QNGIDLSTVDVSYVSSRSW 141
           P                                QNGIDLSTVDVSYVSSRSW
Sbjct: 121 PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 172

[Close]
BLAST of CsGy1G015670 vs. NCBI nr
Match: XP_023001598.1 (ER membrane protein complex subunit 3 [Cucurbita maxima] >XP_023519748.1 ER membrane protein complex subunit 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 248.8 bits (634), Expect = 1.1e-62
Identity = 137/172 (79.65%), Postives = 139/172 (80.81%), Query Frame = 0 

Query: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPVPDAKVVREGQIVLRARNL 60
           MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPVPDAKVVREGQIVLRARNL
Sbjct: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPVPDAKVVREGQIVLRARNL 60

Query: 61  RSAANFIPHKSFRSRRIYYGNEENGLLYVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMII 120
           RSAANFIP KSFRSRR+YYGNEENGLL+VPKGQAQNAQAQMFSDPNMAMDMMKKNLSMII
Sbjct: 61  RSAANFIPQKSFRSRRVYYGNEENGLLFVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMII 120

Query: 121 P--------------------------------QNGIDLSTVDVSYVSSRSW 141
           P                                QNGIDLSTVDVSYVSSRSW
Sbjct: 121 PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 172

[Close]
BLAST of CsGy1G015670 vs. TAIR10
Match: AT4G12590.1 (Protein of unknown function DUF106, transmembrane)

HSP 1 Score: 224.6 bits (571), Expect = 4.1e-59
Identity = 121/172 (70.35%), Postives = 132/172 (76.74%), Query Frame = 0 

Query: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPVPDAKVVREGQIVLRARNL 60
           MAEDLVLDTAIRDWVLIPLSVVMVLIG+LRYFVSKLMRS+P PDAK+V+EGQ+V+RARNL
Sbjct: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSTPTPDAKMVKEGQVVIRARNL 60

Query: 61  RSAANFIPHKSFRSRRIYYGNEENGLLYVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMII 120
           +  ANFIP KSFR+RR Y+ NEENGLL+VPKG+AQN QA MFSDPNMAMDMMKKNLSMII
Sbjct: 61  KVGANFIPPKSFRARRFYFSNEENGLLHVPKGEAQNPQAAMFSDPNMAMDMMKKNLSMII 120

Query: 121 P--------------------------------QNGIDLSTVDVSYVSSRSW 141
           P                                QNGIDLSTVDVSYVSSRSW
Sbjct: 121 PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 172

[Close]
BLAST of CsGy1G015670 vs. Swiss-Prot
Match: sp|Q7SXW4|EMC3_DANRE (ER membrane protein complex subunit 3 OS=Danio rerio OX=7955 GN=emc3 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.8e-16
Identity = 55/173 (31.79%), Postives = 93/173 (53.76%), Query Frame = 0 

Query: 1   MAE-DLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPVPDAKVVREGQIVLRARN 60
           MAE +L+LD+ IR WV++P+  +  L+GV+R++VS L++S      + V + Q+++R+R 
Sbjct: 1   MAEPELLLDSNIRLWVVLPIVFITFLVGVIRHYVSILLQSDKKLTLEQVSDSQVLIRSRV 60

Query: 61  LRSAANFIPHKSFRSRRIYYGNEENGLLYVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMI 120
           LR    +IP +SF  R+ Y+ N+E+G  +  K + +       +DP+M  DMMK N++ +
Sbjct: 61  LRENGKYIPKQSFLMRKFYFNNQEDG--FFKKTKRKVVPPSPMTDPSMLTDMMKGNVTNV 120

Query: 121 IP--------------------------------QNGIDLSTVDVSYVSSRSW 141
           +P                                Q GI+L ++D S+VSS SW
Sbjct: 121 LPMILIGGWINWTFSGFVTTKVPFPLTLRFKPMLQQGIELLSLDASWVSSASW 171

[Close]
BLAST of CsGy1G015670 vs. Swiss-Prot
Match: sp|Q9P0I2|EMC3_HUMAN (ER membrane protein complex subunit 3 OS=Homo sapiens OX=9606 GN=EMC3 PE=1 SV=3)

HSP 1 Score: 85.1 bits (209), Expect = 7.0e-16
Identity = 51/169 (30.18%), Postives = 89/169 (52.66%), Query Frame = 0 

Query: 4   DLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPVPDAKVVREGQIVLRARNLRSA 63
           +L+LD+ IR WV++P+ ++   +G++R++VS L++S      + V + Q+++R+R LR  
Sbjct: 5   ELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLREN 64

Query: 64  ANFIPHKSFRSRRIYYGNEENGLLYVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIP-- 123
             +IP +SF +R+ Y+ N E+G  +  K + +       +DP M  DMMK N++ ++P  
Sbjct: 65  GKYIPKQSFLTRKYYFNNPEDG--FFKKTKRKVVPPSPMTDPTMLTDMMKGNVTNVLPMI 124

Query: 124 ------------------------------QNGIDLSTVDVSYVSSRSW 141
                                         Q GI+L T+D S+VSS SW
Sbjct: 125 LIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASW 171

[Close]
BLAST of CsGy1G015670 vs. Swiss-Prot
Match: sp|Q99KI3|EMC3_MOUSE (ER membrane protein complex subunit 3 OS=Mus musculus OX=10090 GN=Emc3 PE=1 SV=3)

HSP 1 Score: 85.1 bits (209), Expect = 7.0e-16
Identity = 51/169 (30.18%), Postives = 89/169 (52.66%), Query Frame = 0 

Query: 4   DLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPVPDAKVVREGQIVLRARNLRSA 63
           +L+LD+ IR WV++P+ ++   +G++R++VS L++S      + V + Q+++R+R LR  
Sbjct: 5   ELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLREN 64

Query: 64  ANFIPHKSFRSRRIYYGNEENGLLYVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIP-- 123
             +IP +SF +R+ Y+ N E+G  +  K + +       +DP M  DMMK N++ ++P  
Sbjct: 65  GKYIPKQSFLTRKYYFNNPEDG--FFKKTKRKVVPPSPMTDPTMLTDMMKGNVTNVLPMI 124

Query: 124 ------------------------------QNGIDLSTVDVSYVSSRSW 141
                                         Q GI+L T+D S+VSS SW
Sbjct: 125 LIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASW 171

[Close]
BLAST of CsGy1G015670 vs. Swiss-Prot
Match: sp|Q5R7C1|EMC3_PONAB (ER membrane protein complex subunit 3 OS=Pongo abelii OX=9601 GN=EMC3 PE=2 SV=3)

HSP 1 Score: 85.1 bits (209), Expect = 7.0e-16
Identity = 51/169 (30.18%), Postives = 89/169 (52.66%), Query Frame = 0 

Query: 4   DLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPVPDAKVVREGQIVLRARNLRSA 63
           +L+LD+ IR WV++P+ ++   +G++R++VS L++S      + V + Q+++R+R LR  
Sbjct: 5   ELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLREN 64

Query: 64  ANFIPHKSFRSRRIYYGNEENGLLYVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIP-- 123
             +IP +SF +R+ Y+ N E+G  +  K + +       +DP M  DMMK N++ ++P  
Sbjct: 65  GKYIPKQSFLTRKYYFNNPEDG--FFKKTKRKVVPPSPMTDPTMLTDMMKGNVTNVLPMI 124

Query: 124 ------------------------------QNGIDLSTVDVSYVSSRSW 141
                                         Q GI+L T+D S+VSS SW
Sbjct: 125 LIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASW 171

[Close]
BLAST of CsGy1G015670 vs. Swiss-Prot
Match: sp|Q5U2V8|EMC3_RAT (ER membrane protein complex subunit 3 OS=Rattus norvegicus OX=10116 GN=Emc3 PE=2 SV=3)

HSP 1 Score: 85.1 bits (209), Expect = 7.0e-16
Identity = 51/169 (30.18%), Postives = 89/169 (52.66%), Query Frame = 0 

Query: 4   DLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPVPDAKVVREGQIVLRARNLRSA 63
           +L+LD+ IR WV++P+ ++   +G++R++VS L++S      + V + Q+++R+R LR  
Sbjct: 5   ELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLREN 64

Query: 64  ANFIPHKSFRSRRIYYGNEENGLLYVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIP-- 123
             +IP +SF +R+ Y+ N E+G  +  K + +       +DP M  DMMK N++ ++P  
Sbjct: 65  GKYIPKQSFLTRKYYFNNPEDG--FFKKTKRKVVPPSPMTDPTMLTDMMKGNVTNVLPMI 124

Query: 124 ------------------------------QNGIDLSTVDVSYVSSRSW 141
                                         Q GI+L T+D S+VSS SW
Sbjct: 125 LIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASW 171

[Close]
BLAST of CsGy1G015670 vs. TrEMBL
Match: tr|A0A0A0LVU1|A0A0A0LVU1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G188170 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 2.3e-64
Identity = 140/172 (81.40%), Postives = 140/172 (81.40%), Query Frame = 0 

Query: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPVPDAKVVREGQIVLRARNL 60
           MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPVPDAKVVREGQIVLRARNL
Sbjct: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPVPDAKVVREGQIVLRARNL 60

Query: 61  RSAANFIPHKSFRSRRIYYGNEENGLLYVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMII 120
           RSAANFIPHKSFRSRRIYYGNEENGLLYVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMII
Sbjct: 61  RSAANFIPHKSFRSRRIYYGNEENGLLYVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMII 120

Query: 121 P--------------------------------QNGIDLSTVDVSYVSSRSW 141
           P                                QNGIDLSTVDVSYVSSRSW
Sbjct: 121 PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 172

[Close]
BLAST of CsGy1G015670 vs. TrEMBL
Match: tr|A0A1S3C924|A0A1S3C924_CUCME (ER membrane protein complex subunit 3 OS=Cucumis melo OX=3656 GN=LOC103498211 PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 3.0e-64
Identity = 139/172 (80.81%), Postives = 140/172 (81.40%), Query Frame = 0 

Query: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPVPDAKVVREGQIVLRARNL 60
           MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPVPDAKVVREGQIVLRARNL
Sbjct: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPVPDAKVVREGQIVLRARNL 60

Query: 61  RSAANFIPHKSFRSRRIYYGNEENGLLYVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMII 120
           RSAANFIPHKSFRSRR+YYGNEENGLLYVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMII
Sbjct: 61  RSAANFIPHKSFRSRRVYYGNEENGLLYVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMII 120

Query: 121 P--------------------------------QNGIDLSTVDVSYVSSRSW 141
           P                                QNGIDLSTVDVSYVSSRSW
Sbjct: 121 PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 172

[Close]
BLAST of CsGy1G015670 vs. TrEMBL
Match: tr|A0A067KTH6|A0A067KTH6_JATCU (ER membrane protein complex subunit 3 OS=Jatropha curcas OX=180498 GN=JCGZ_09018 PE=3 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 1.1e-58
Identity = 126/172 (73.26%), Postives = 136/172 (79.07%), Query Frame = 0 

Query: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPVPDAKVVREGQIVLRARNL 60
           MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRS P+PDAK+V+EGQ+++RARNL
Sbjct: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSYPIPDAKIVKEGQVIVRARNL 60

Query: 61  RSAANFIPHKSFRSRRIYYGNEENGLLYVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMII 120
           RS ANFIP KSFR+RR+Y+ NEENGLL+VPKGQAQNAQAQMFSDPNMAMDMMKKNLSMII
Sbjct: 61  RSGANFIPPKSFRARRVYFSNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMII 120

Query: 121 P--------------------------------QNGIDLSTVDVSYVSSRSW 141
           P                                QNGIDLSTVDVSYVSSRSW
Sbjct: 121 PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 172

[Close]
BLAST of CsGy1G015670 vs. TrEMBL
Match: tr|A0A059CGL8|A0A059CGL8_EUCGR (ER membrane protein complex subunit 3 OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_D01412 PE=3 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 3.2e-58
Identity = 126/172 (73.26%), Postives = 136/172 (79.07%), Query Frame = 0 

Query: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPVPDAKVVREGQIVLRARNL 60
           MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRS+ +PDAK+V+EGQ+++RARNL
Sbjct: 46  MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSAQIPDAKLVKEGQVIVRARNL 105

Query: 61  RSAANFIPHKSFRSRRIYYGNEENGLLYVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMII 120
           R+AANFIP KSFR+RR+YY NEENGLLYVPKGQA NAQAQMFSDPNMAMDMMKKNLSMII
Sbjct: 106 RAAANFIPPKSFRARRLYYSNEENGLLYVPKGQAPNAQAQMFSDPNMAMDMMKKNLSMII 165

Query: 121 P--------------------------------QNGIDLSTVDVSYVSSRSW 141
           P                                QNGIDLSTVDVSYVSSRSW
Sbjct: 166 PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRAMLQNGIDLSTVDVSYVSSRSW 217

[Close]
BLAST of CsGy1G015670 vs. TrEMBL
Match: tr|A0A059CFY0|A0A059CFY0_EUCGR (ER membrane protein complex subunit 3 OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_D01412 PE=3 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 3.2e-58
Identity = 126/172 (73.26%), Postives = 136/172 (79.07%), Query Frame = 0 

Query: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPVPDAKVVREGQIVLRARNL 60
           MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRS+ +PDAK+V+EGQ+++RARNL
Sbjct: 46  MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSAQIPDAKLVKEGQVIVRARNL 105

Query: 61  RSAANFIPHKSFRSRRIYYGNEENGLLYVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMII 120
           R+AANFIP KSFR+RR+YY NEENGLLYVPKGQA NAQAQMFSDPNMAMDMMKKNLSMII
Sbjct: 106 RAAANFIPPKSFRARRLYYSNEENGLLYVPKGQAPNAQAQMFSDPNMAMDMMKKNLSMII 165

Query: 121 P--------------------------------QNGIDLSTVDVSYVSSRSW 141
           P                                QNGIDLSTVDVSYVSSRSW
Sbjct: 166 PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRAMLQNGIDLSTVDVSYVSSRSW 217

The following BLAST results are available for this feature:
BLAST of CsGy1G015670 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004139548.13.5e-6481.40PREDICTED: ER membrane protein complex subunit 3 [Cucumis sativus][more]
KGN65064.13.5e-6481.40hypothetical protein Csa_1G188170 [Cucumis sativus][more]
XP_008458952.14.5e-6480.81PREDICTED: ER membrane protein complex subunit 3 [Cucumis melo][more]
XP_022927570.11.1e-6279.65ER membrane protein complex subunit 3 [Cucurbita moschata][more]
XP_023001598.11.1e-6279.65ER membrane protein complex subunit 3 [Cucurbita maxima] >XP_023519748.1 ER memb... [more]
BLAST of CsGy1G015670 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G12590.14.1e-5970.35Protein of unknown function DUF106, transmembrane[more]
BLAST of CsGy1G015670 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q7SXW4|EMC3_DANRE1.8e-1631.79ER membrane protein complex subunit 3 OS=Danio rerio OX=7955 GN=emc3 PE=2 SV=1[more]
sp|Q9P0I2|EMC3_HUMAN7.0e-1630.18ER membrane protein complex subunit 3 OS=Homo sapiens OX=9606 GN=EMC3 PE=1 SV=3[more]
sp|Q99KI3|EMC3_MOUSE7.0e-1630.18ER membrane protein complex subunit 3 OS=Mus musculus OX=10090 GN=Emc3 PE=1 SV=3[more]
sp|Q5R7C1|EMC3_PONAB7.0e-1630.18ER membrane protein complex subunit 3 OS=Pongo abelii OX=9601 GN=EMC3 PE=2 SV=3[more]
sp|Q5U2V8|EMC3_RAT7.0e-1630.18ER membrane protein complex subunit 3 OS=Rattus norvegicus OX=10116 GN=Emc3 PE=2... [more]
BLAST of CsGy1G015670 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LVU1|A0A0A0LVU1_CUCSA2.3e-6481.40Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G188170 PE=4 SV=1[more]
tr|A0A1S3C924|A0A1S3C924_CUCME3.0e-6480.81ER membrane protein complex subunit 3 OS=Cucumis melo OX=3656 GN=LOC103498211 PE... [more]
tr|A0A067KTH6|A0A067KTH6_JATCU1.1e-5873.26ER membrane protein complex subunit 3 OS=Jatropha curcas OX=180498 GN=JCGZ_09018... [more]
tr|A0A059CGL8|A0A059CGL8_EUCGR3.2e-5873.26ER membrane protein complex subunit 3 OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_... [more]
tr|A0A059CFY0|A0A059CFY0_EUCGR3.2e-5873.26ER membrane protein complex subunit 3 OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR008568EMC3
IPR002809EMC3/TMCO1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034975 protein folding in endoplasmic reticulum
cellular_component GO:0072546 ER membrane protein complex
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G015670.1CsGy1G015670.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002809Integral membrane protein EMC3/TMCO1-likeSMARTSM01415DUF106_2coord: 4..146
e-value: 1.4E-21
score: 87.7
IPR002809Integral membrane protein EMC3/TMCO1-likePFAMPF01956DUF106coord: 4..124
e-value: 1.0E-19
score: 70.8
IPR008568ER membrane protein complex subunit 3PANTHERPTHR13116UNCHARACTERIZEDcoord: 1..122
NoneNo IPR availablePANTHERPTHR13116:SF5ER MEMBRANE PROTEIN COMPLEX 3coord: 1..122

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy1G015670Cla008999Watermelon (97103) v1cgybwmB051
CsGy1G015670Csa1G188170Cucumber (Chinese Long) v2cgybcuB001
CsGy1G015670MELO3C021687Melon (DHL92) v3.5.1cgybmeB017
CsGy1G015670ClCG01G010160Watermelon (Charleston Gray)cgybwcgB021
CsGy1G015670Lsi02G011020Bottle gourd (USVL1VR-Ls)cgyblsiB029
CsGy1G015670MELO3C021687.2Melon (DHL92) v3.6.1cgybmedB014
CsGy1G015670CsaV3_1G017260Cucumber (Chinese Long) v3cgybcucB002
CsGy1G015670Cla97C01G010180Watermelon (97103) v2cgybwmbB009
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy1G015670Cucumber (Chinese Long) v3cgybcucB046
CsGy1G015670Watermelon (97103) v2cgybwmbB006
CsGy1G015670Wax gourdcgybwgoB032
CsGy1G015670Wax gourdcgybwgoB042
CsGy1G015670Wax gourdcgybwgoB056
CsGy1G015670Cucumber (Gy14) v2cgybcgybB036
CsGy1G015670Cucurbita maxima (Rimu)cgybcmaB068
CsGy1G015670Cucurbita maxima (Rimu)cgybcmaB095
CsGy1G015670Cucurbita maxima (Rimu)cgybcmaB128
CsGy1G015670Cucurbita moschata (Rifu)cgybcmoB065
CsGy1G015670Cucurbita moschata (Rifu)cgybcmoB084
CsGy1G015670Cucurbita moschata (Rifu)cgybcmoB118
CsGy1G015670Cucurbita pepo (Zucchini)cgybcpeB007
CsGy1G015670Cucurbita pepo (Zucchini)cgybcpeB024
CsGy1G015670Cucurbita pepo (Zucchini)cgybcpeB087
CsGy1G015670Cucumber (Chinese Long) v2cgybcuB041
CsGy1G015670Bottle gourd (USVL1VR-Ls)cgyblsiB016
CsGy1G015670Watermelon (Charleston Gray)cgybwcgB018
CsGy1G015670Watermelon (97103) v1cgybwmB048
CsGy1G015670Wild cucumber (PI 183967)cgybcpiB001
CsGy1G015670Wild cucumber (PI 183967)cgybcpiB038
CsGy1G015670Silver-seed gourdcarcgybB0408
CsGy1G015670Silver-seed gourdcarcgybB1020