CsGy1G015370 (gene) Cucumber (Gy14) v2

NameCsGy1G015370
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptiontrihelix transcription factor GT-2
LocationChr1 : 11294187 .. 11294696 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACCTCTTCACCGCCGACCACCGGATACCCACCTCCGACAACTTCCCTCAGCACGTTGCTCCATTTCCCGATCCCACCGACCTCCTCTACGCTGCTCCATCCTCTGTATTTCCCCCTACCGACATCATCAACCACCTCTCCAACCCTCCACCGCCGCCTCAGAAGCTCCGTCCCATCCGCTGCAACGGTAGGTCCCCTGCCGGTTCTCAGGCCGAAAACATCTTCGATGGAGCCCTAAGGAGTTTCCAATGCGTTTCTTCCTCGCCTGAGGGTGGTTTTTCTGGGGATCAGCTCTGTGTGGCTAATATTGACCCTTGTCAGTACTTCAACTCCTCTGCAAAAGATGAAAAGCCTGAAGTCAAGCATAATGGCAGCTTCGGCGATATCATTGCAAACGATTACTTCTCCGAGGAAGAGACGAAGAACGGCGGATCCGGTGCTGCTATTGCTGCGGAGAATTTGAGCCGGAGCCGTGAAGAACCTCAATTGGACGACGATTCGTGGTGA

mRNA sequence

ATGGACCTCTTCACCGCCGACCACCGGATACCCACCTCCGACAACTTCCCTCAGCACGTTGCTCCATTTCCCGATCCCACCGACCTCCTCTACGCTGCTCCATCCTCTGTATTTCCCCCTACCGACATCATCAACCACCTCTCCAACCCTCCACCGCCGCCTCAGAAGCTCCGTCCCATCCGCTGCAACGGTAGGTCCCCTGCCGGTTCTCAGGCCGAAAACATCTTCGATGGAGCCCTAAGGAGTTTCCAATGCGTTTCTTCCTCGCCTGAGGGTGGTTTTTCTGGGGATCAGCTCTGTGTGGCTAATATTGACCCTTGTCAGTACTTCAACTCCTCTGCAAAAGATGAAAAGCCTGAAGTCAAGCATAATGGCAGCTTCGGCGATATCATTGCAAACGATTACTTCTCCGAGGAAGAGACGAAGAACGGCGGATCCGGTGCTGCTATTGCTGCGGAGAATTTGAGCCGGAGCCGTGAAGAACCTCAATTGGACGACGATTCGTGGTGA

Coding sequence (CDS)

ATGGACCTCTTCACCGCCGACCACCGGATACCCACCTCCGACAACTTCCCTCAGCACGTTGCTCCATTTCCCGATCCCACCGACCTCCTCTACGCTGCTCCATCCTCTGTATTTCCCCCTACCGACATCATCAACCACCTCTCCAACCCTCCACCGCCGCCTCAGAAGCTCCGTCCCATCCGCTGCAACGGTAGGTCCCCTGCCGGTTCTCAGGCCGAAAACATCTTCGATGGAGCCCTAAGGAGTTTCCAATGCGTTTCTTCCTCGCCTGAGGGTGGTTTTTCTGGGGATCAGCTCTGTGTGGCTAATATTGACCCTTGTCAGTACTTCAACTCCTCTGCAAAAGATGAAAAGCCTGAAGTCAAGCATAATGGCAGCTTCGGCGATATCATTGCAAACGATTACTTCTCCGAGGAAGAGACGAAGAACGGCGGATCCGGTGCTGCTATTGCTGCGGAGAATTTGAGCCGGAGCCGTGAAGAACCTCAATTGGACGACGATTCGTGGTGA

Protein sequence

MDLFTADHRIPTSDNFPQHVAPFPDPTDLLYAAPSSVFPPTDIINHLSNPPPPPQKLRPIRCNGRSPAGSQAENIFDGALRSFQCVSSSPEGGFSGDQLCVANIDPCQYFNSSAKDEKPEVKHNGSFGDIIANDYFSEEETKNGGSGAAIAAENLSRSREEPQLDDDSW
BLAST of CsGy1G015370 vs. NCBI nr
Match: XP_004139609.1 (PREDICTED: trihelix transcription factor GT-2 [Cucumis sativus] >KGN65026.1 hypothetical protein Csa_1G181390 [Cucumis sativus])

HSP 1 Score: 344.0 bits (881), Expect = 3.0e-91
Identity = 167/168 (99.40%), Postives = 168/168 (100.00%), Query Frame = 0

Query: 1   MDLFTADHRIPTSDNFPQHVAPFPDPTDLLYAAPSSVFPPTDIINHLSNPPPPPQKLRPI 60
           MDLFTADHRIPTSDNFPQHVAPFPDPTDLLYAAPSSVFPPTDIINHLSNPPPPPQKLRPI
Sbjct: 1   MDLFTADHRIPTSDNFPQHVAPFPDPTDLLYAAPSSVFPPTDIINHLSNPPPPPQKLRPI 60

Query: 61  RCNGRSPAGSQAENIFDGALRSFQCVSSSPEGGFSGDQLCVANIDPCQYFNSSAKDEKPE 120
           RCNGRSPAGSQAENIFDG+LRSFQCVSSSPEGGFSGDQLCVANIDPCQYFNSSAKDEKPE
Sbjct: 61  RCNGRSPAGSQAENIFDGSLRSFQCVSSSPEGGFSGDQLCVANIDPCQYFNSSAKDEKPE 120

Query: 121 VKHNGSFGDIIANDYFSEEETKNGGSGAAIAAENLSRSREEPQLDDDS 169
           VKHNGSFGDIIANDYFSEEETKNGGSGAAIAAENLSRSREEPQLDDDS
Sbjct: 121 VKHNGSFGDIIANDYFSEEETKNGGSGAAIAAENLSRSREEPQLDDDS 168

BLAST of CsGy1G015370 vs. NCBI nr
Match: XP_008463656.1 (PREDICTED: trihelix transcription factor GT-2, partial [Cucumis melo])

HSP 1 Score: 340.1 bits (871), Expect = 4.3e-90
Identity = 165/168 (98.21%), Postives = 168/168 (100.00%), Query Frame = 0

Query: 1   MDLFTADHRIPTSDNFPQHVAPFPDPTDLLYAAPSSVFPPTDIINHLSNPPPPPQKLRPI 60
           MDLFTADHRIPTSDNFPQHVAPFPDPTDLLYAAPS+VFPPTDIINHLSNPPPPPQKLRPI
Sbjct: 1   MDLFTADHRIPTSDNFPQHVAPFPDPTDLLYAAPSAVFPPTDIINHLSNPPPPPQKLRPI 60

Query: 61  RCNGRSPAGSQAENIFDGALRSFQCVSSSPEGGFSGDQLCVANIDPCQYFNSSAKDEKPE 120
           RCNGRSPAGSQAENIFDGALRSFQCVSSSPEGGFSGDQLCVANIDPCQYF+SSAKDEKPE
Sbjct: 61  RCNGRSPAGSQAENIFDGALRSFQCVSSSPEGGFSGDQLCVANIDPCQYFDSSAKDEKPE 120

Query: 121 VKHNGSFGDIIANDYFSEEETKNGGSGAAIAAENLSRSREEPQLDDDS 169
           VKHNGSFGDIIANDYFSEEETKNGGSGAAIAAENLSRSREEPQLD+DS
Sbjct: 121 VKHNGSFGDIIANDYFSEEETKNGGSGAAIAAENLSRSREEPQLDNDS 168

BLAST of CsGy1G015370 vs. NCBI nr
Match: XP_023001568.1 (trihelix transcription factor GTL1 isoform X2 [Cucurbita maxima])

HSP 1 Score: 297.4 bits (760), Expect = 3.2e-77
Identity = 144/168 (85.71%), Postives = 153/168 (91.07%), Query Frame = 0

Query: 1   MDLFTADHRIPTSDNFPQHVAPFPDPTDLLYAAPSSVFPPTDIINHLSNPPPPPQKLRPI 60
           MDLFT DHRIP+SD+FPQHVAPFPD TDLLYAAPS+VFP  DII HL NPPPPPQKLRPI
Sbjct: 1   MDLFTGDHRIPSSDSFPQHVAPFPDSTDLLYAAPSAVFPSADIIAHLPNPPPPPQKLRPI 60

Query: 61  RCNGRSPAGSQAENIFDGALRSFQCVSSSPEGGFSGDQLCVANIDPCQYFNSSAKDEKPE 120
           RCNGRSPAGSQA+NIFDGALRSFQCVSSSPEGGFSGDQLCVANIDPCQYFNSS KD+KP+
Sbjct: 61  RCNGRSPAGSQADNIFDGALRSFQCVSSSPEGGFSGDQLCVANIDPCQYFNSSEKDDKPD 120

Query: 121 VKHNGSFGDIIANDYFSEEETKNGGSGAAIAAENLSRSREEPQLDDDS 169
            K NG F DII N++FSEEETKNGG+ AAIAAENLSRS E PQLDDDS
Sbjct: 121 AKDNGGFSDIIGNNFFSEEETKNGGTDAAIAAENLSRSLEGPQLDDDS 168

BLAST of CsGy1G015370 vs. NCBI nr
Match: XP_023001567.1 (trihelix transcription factor GT-2 isoform X1 [Cucurbita maxima])

HSP 1 Score: 297.4 bits (760), Expect = 3.2e-77
Identity = 144/168 (85.71%), Postives = 153/168 (91.07%), Query Frame = 0

Query: 1   MDLFTADHRIPTSDNFPQHVAPFPDPTDLLYAAPSSVFPPTDIINHLSNPPPPPQKLRPI 60
           MDLFT DHRIP+SD+FPQHVAPFPD TDLLYAAPS+VFP  DII HL NPPPPPQKLRPI
Sbjct: 1   MDLFTGDHRIPSSDSFPQHVAPFPDSTDLLYAAPSAVFPSADIIAHLPNPPPPPQKLRPI 60

Query: 61  RCNGRSPAGSQAENIFDGALRSFQCVSSSPEGGFSGDQLCVANIDPCQYFNSSAKDEKPE 120
           RCNGRSPAGSQA+NIFDGALRSFQCVSSSPEGGFSGDQLCVANIDPCQYFNSS KD+KP+
Sbjct: 61  RCNGRSPAGSQADNIFDGALRSFQCVSSSPEGGFSGDQLCVANIDPCQYFNSSEKDDKPD 120

Query: 121 VKHNGSFGDIIANDYFSEEETKNGGSGAAIAAENLSRSREEPQLDDDS 169
            K NG F DII N++FSEEETKNGG+ AAIAAENLSRS E PQLDDDS
Sbjct: 121 AKDNGGFSDIIGNNFFSEEETKNGGTDAAIAAENLSRSLEGPQLDDDS 168

BLAST of CsGy1G015370 vs. NCBI nr
Match: XP_022927336.1 (trihelix transcription factor GTL1 isoform X2 [Cucurbita moschata])

HSP 1 Score: 295.4 bits (755), Expect = 1.2e-76
Identity = 143/168 (85.12%), Postives = 152/168 (90.48%), Query Frame = 0

Query: 1   MDLFTADHRIPTSDNFPQHVAPFPDPTDLLYAAPSSVFPPTDIINHLSNPPPPPQKLRPI 60
           MDLFT DHRIP+SD+FPQHVAPFPD TDLLYAAPS+VFP  DII HL NPPPPPQKLRPI
Sbjct: 1   MDLFTGDHRIPSSDSFPQHVAPFPDSTDLLYAAPSAVFPSADIIAHLPNPPPPPQKLRPI 60

Query: 61  RCNGRSPAGSQAENIFDGALRSFQCVSSSPEGGFSGDQLCVANIDPCQYFNSSAKDEKPE 120
           RCNGRSPAGSQA+NIFDGALRSFQCVSSSPEGGFSGDQLCVANIDPCQYFNSS KD+KP+
Sbjct: 61  RCNGRSPAGSQADNIFDGALRSFQCVSSSPEGGFSGDQLCVANIDPCQYFNSSEKDDKPD 120

Query: 121 VKHNGSFGDIIANDYFSEEETKNGGSGAAIAAENLSRSREEPQLDDDS 169
            K NG F DII N++F EEETKNGG+ AAIAAENLSRS E PQLDDDS
Sbjct: 121 AKDNGGFSDIIGNNFFPEEETKNGGTDAAIAAENLSRSLEGPQLDDDS 168

BLAST of CsGy1G015370 vs. TrEMBL
Match: tr|A0A0A0LYK7|A0A0A0LYK7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181390 PE=4 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 2.0e-91
Identity = 167/168 (99.40%), Postives = 168/168 (100.00%), Query Frame = 0

Query: 1   MDLFTADHRIPTSDNFPQHVAPFPDPTDLLYAAPSSVFPPTDIINHLSNPPPPPQKLRPI 60
           MDLFTADHRIPTSDNFPQHVAPFPDPTDLLYAAPSSVFPPTDIINHLSNPPPPPQKLRPI
Sbjct: 1   MDLFTADHRIPTSDNFPQHVAPFPDPTDLLYAAPSSVFPPTDIINHLSNPPPPPQKLRPI 60

Query: 61  RCNGRSPAGSQAENIFDGALRSFQCVSSSPEGGFSGDQLCVANIDPCQYFNSSAKDEKPE 120
           RCNGRSPAGSQAENIFDG+LRSFQCVSSSPEGGFSGDQLCVANIDPCQYFNSSAKDEKPE
Sbjct: 61  RCNGRSPAGSQAENIFDGSLRSFQCVSSSPEGGFSGDQLCVANIDPCQYFNSSAKDEKPE 120

Query: 121 VKHNGSFGDIIANDYFSEEETKNGGSGAAIAAENLSRSREEPQLDDDS 169
           VKHNGSFGDIIANDYFSEEETKNGGSGAAIAAENLSRSREEPQLDDDS
Sbjct: 121 VKHNGSFGDIIANDYFSEEETKNGGSGAAIAAENLSRSREEPQLDDDS 168

BLAST of CsGy1G015370 vs. TrEMBL
Match: tr|A0A1S3CJS0|A0A1S3CJS0_CUCME (trihelix transcription factor GT-2 OS=Cucumis melo OX=3656 GN=LOC103501749 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 2.8e-90
Identity = 165/168 (98.21%), Postives = 168/168 (100.00%), Query Frame = 0

Query: 1   MDLFTADHRIPTSDNFPQHVAPFPDPTDLLYAAPSSVFPPTDIINHLSNPPPPPQKLRPI 60
           MDLFTADHRIPTSDNFPQHVAPFPDPTDLLYAAPS+VFPPTDIINHLSNPPPPPQKLRPI
Sbjct: 1   MDLFTADHRIPTSDNFPQHVAPFPDPTDLLYAAPSAVFPPTDIINHLSNPPPPPQKLRPI 60

Query: 61  RCNGRSPAGSQAENIFDGALRSFQCVSSSPEGGFSGDQLCVANIDPCQYFNSSAKDEKPE 120
           RCNGRSPAGSQAENIFDGALRSFQCVSSSPEGGFSGDQLCVANIDPCQYF+SSAKDEKPE
Sbjct: 61  RCNGRSPAGSQAENIFDGALRSFQCVSSSPEGGFSGDQLCVANIDPCQYFDSSAKDEKPE 120

Query: 121 VKHNGSFGDIIANDYFSEEETKNGGSGAAIAAENLSRSREEPQLDDDS 169
           VKHNGSFGDIIANDYFSEEETKNGGSGAAIAAENLSRSREEPQLD+DS
Sbjct: 121 VKHNGSFGDIIANDYFSEEETKNGGSGAAIAAENLSRSREEPQLDNDS 168

BLAST of CsGy1G015370 vs. TrEMBL
Match: tr|W9QZA6|W9QZA6_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_010615 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.1e-14
Identity = 42/69 (60.87%), Postives = 50/69 (72.46%), Query Frame = 0

Query: 1  MDLFTADHRIPTSDNFPQHVAPFPDPTDLLYAAPSSVFPPTDIINHLSNPPPPPQKLRPI 60
          M++F  D +IP  D FPQH+APFP+PTDL+Y  P++V    DIINH   P  PPQKLRPI
Sbjct: 1  MEVFAGDRQIPNPDGFPQHIAPFPEPTDLIYDHPTAVLHSPDIINH--RPISPPQKLRPI 60

Query: 61 RCNGRSPAG 70
          RCN R PAG
Sbjct: 61 RCNARYPAG 67

BLAST of CsGy1G015370 vs. TrEMBL
Match: tr|A0A067L8R1|A0A067L8R1_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_01336 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.4e-12
Identity = 54/146 (36.99%), Postives = 74/146 (50.68%), Query Frame = 0

Query: 1   MDLFTADHRIPTSDNFPQHVAPFPDPTDLLYAAPSSVFPPTDIINHLSNPPPPPQKLRPI 60
           M+L T D  +P S +FPQ ++PFP   +LL + P +    +DI         PPQKLRPI
Sbjct: 1   MELLTGDRPVPNSTDFPQQISPFPATGNLLISNPMANIHSSDI----DRQNLPPQKLRPI 60

Query: 61  RCNGRSPAGSQAENI-----FDGALRSFQCVSSSPEGGFSGDQLCVANIDPCQYFNSSAK 120
           R NGRSP+ SQ  ++      DG L +          G   DQ+C  N + C+YF   AK
Sbjct: 61  RANGRSPSSSQINDLSLAAGLDGTLENL---------GLLADQVCGINREACEYFKPPAK 120

Query: 121 DEKPEVKHNGSFGDIIANDYFSEEET 142
            E  +V   G FG++ A     + ET
Sbjct: 121 AEASDVAVTG-FGELRAPYLVEDSET 132

BLAST of CsGy1G015370 vs. TrEMBL
Match: tr|A0A2C9VME6|A0A2C9VME6_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_07G124500 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.4e-11
Identity = 56/153 (36.60%), Postives = 77/153 (50.33%), Query Frame = 0

Query: 1   MDLFTADHRIPTSDNFPQHVAPFPDPTDLLYAAPSSVFPPTDIINHLSNPPPPPQKLRPI 60
           M+L T D ++P S +FPQH++PFP   +LL + P +    ++I         PPQKLRPI
Sbjct: 1   MELLTGDRQVPNSTDFPQHISPFPAAGNLLISNPMAEIHSSEI----DRQNLPPQKLRPI 60

Query: 61  RCNGRSPAGSQAENI-----FDGALRSFQCVSSSPEGGFSGDQLCVANIDPCQYFNSSAK 120
           R NGRSP+ SQA ++      DG L +          G   DQ+C  + +  QYF    K
Sbjct: 61  RANGRSPSSSQASDLPLAGGLDGTLENL---------GLLADQVCGISGENGQYFKPPVK 120

Query: 121 DEKPEVKHNGSFGDIIANDYFSEEETKNGGSGA 149
            E  E+  NG F D   N     + +   GSGA
Sbjct: 121 AEDSEMVLNG-FAD-TGNPCLVADGSAGFGSGA 138

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004139609.13.0e-9199.40PREDICTED: trihelix transcription factor GT-2 [Cucumis sativus] >KGN65026.1 hypo... [more]
XP_008463656.14.3e-9098.21PREDICTED: trihelix transcription factor GT-2, partial [Cucumis melo][more]
XP_023001568.13.2e-7785.71trihelix transcription factor GTL1 isoform X2 [Cucurbita maxima][more]
XP_023001567.13.2e-7785.71trihelix transcription factor GT-2 isoform X1 [Cucurbita maxima][more]
XP_022927336.11.2e-7685.12trihelix transcription factor GTL1 isoform X2 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LYK7|A0A0A0LYK7_CUCSA2.0e-9199.40Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181390 PE=4 SV=1[more]
tr|A0A1S3CJS0|A0A1S3CJS0_CUCME2.8e-9098.21trihelix transcription factor GT-2 OS=Cucumis melo OX=3656 GN=LOC103501749 PE=4 ... [more]
tr|W9QZA6|W9QZA6_9ROSA1.1e-1460.87Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_010615 PE=4 SV=1[more]
tr|A0A067L8R1|A0A067L8R1_JATCU1.4e-1236.99Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_01336 PE=4 SV=1[more]
tr|A0A2C9VME6|A0A2C9VME6_MANES3.4e-1136.60Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_07G124500 PE=4 SV=... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G015370.1CsGy1G015370.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 138..169

The following gene(s) are paralogous to this gene:

None