CsGy1G013970 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G013970
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Pheophorbide a oxygenase
Location	Chr1 : 9595816 .. 9596366 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTCTTCGGAGTGGAGATTGACACAAAGCTTCCTTTACTTGGCGATAAAAAATGGGTAATGTGGATTTCCTCCTTCAATGTGCTAGTGGGTCCTGGAAAAATTCGTTCTATTGTATGTACTGCTCGAAACTTCTTCCAGTTTTCAATGGCCGGTCCTGTTTGATGGCAGGCAAGCAGTGCGGTGTTAATTAGATCTGTTTCTTATTTTTATGATATACTATCATCTCCACCGTTATTGGTCATTCAACATGCATTATATGTGATATTACAGTGTTTGACTTCCTAAGTTTGCTTTTTCTATTAGGTAGTTCCTCGATGGCACAAGCATTGGACTTGGAATAAGGTATATGATGGAGACATGATTGTTCTTTAGGGTCAAGAGAAGATATTTTTATCAATGGAAGGTTCGACAAATGTAAAGAATACACTAAAATAACGTTCACACCATAGCATTCAGAAATTGGCTGAATCGGCATGGAAAGGGCCAAAACCGAATAGTTCAGAGCTAGCAGCCACTAGCGCCTGTCATCAACAGTTCTATCTAGAACTC

mRNA sequence

TTTTCTTCGGAGTGGAGATTGACACAAAGCTTCCTTTACTTGGCGATAAAAAATGGGTAATGTGGATTTCCTCCTTCAATGTGCTAGTGGGTCCTGGAAAAATTCGTTCTATTGTATGTACTGCTCGAAACTTCTTCCAGTTTTCAATGGCCGGTCCTGTAGTTCCTCGATGGCACAAGCATTGGACTTGGAATAAGGGTCAAGAGAAGATATTTTTATCAATGGAAGGTTCGACAAATAAATTGGCTGAATCGGCATGGAAAGGGCCAAAACCGAATAGTTCAGAGCTAGCAGCCACTAGCGCCTGTCATCAACAGTTCTATCTAGAACTC

Coding sequence (CDS)

ATGTGGATTTCCTCCTTCAATGTGCTAGTGGGTCCTGGAAAAATTCGTTCTATTGTATGTACTGCTCGAAACTTCTTCCAGTTTTCAATGGCCGGTCCTGTAGTTCCTCGATGGCACAAGCATTGGACTTGGAATAAGGGTCAAGAGAAGATATTTTTATCAATGGAAGGTTCGACAAATAAATTGGCTGAATCGGCATGGAAAGGGCCAAAACCGAATAGTTCAGAGCTAGCAGCCACTAGCGCCTGTCATCAACAGTTCTATCTAGAACTC

Protein sequence

MWISSFNVLVGPGKIRSIVCTARNFFQFSMAGPVVPRWHKHWTWNKGQEKIFLSMEGSTNKLAESAWKGPKPNSSELAATSACHQQFYLEL

Homology

[Close]

BLAST of CsGy1G013970 vs. NCBI nr
Match: KGN64860.1 (hypothetical protein Csa_1G132700 [Cucumis sativus])

HSP 1 Score: 158.7 bits (400), Expect = 9.5e-36
Identity = 76/91 (83.52%), Postives = 76/91 (83.52%), Query Frame = 0


Query: 1  MWISSFNVLVGPGKIRSIVCTARNFFQFSMAGPVVPRWHKHWTWNKGQEKIFLSMEGSTN 60
          MWISSFNVLVGPGKIR IVCTARNFFQFSMAGPVVPRWHKHWTWNK              
Sbjct: 23 MWISSFNVLVGPGKIRFIVCTARNFFQFSMAGPVVPRWHKHWTWNK-------------- 82

Query: 61 KLAESAWKGPKPNSSELAATSACHQQFYLEL 92
          KLAESAWKGPKPNSSELAATSACHQQFYLEL
Sbjct: 83 KLAESAWKGPKPNSSELAATSACHQQFYLEL 99

[Close]

BLAST of CsGy1G013970 vs. NCBI nr
Match: BAH84856.1 (putative pheide a oxygenase, partial [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 3.1e-18
Identity = 50/74 (67.57%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 1   MWISSFNVLVGPGKIRSIVCTARNFFQFSMAGP----VVPRWHKHWTWNK---------- 60
           +WI SFNV +GPGK RSIVC+ARNFFQFSM GP    VVPRWH+HWT NK          
Sbjct: 107 IWICSFNVPMGPGKTRSIVCSARNFFQFSMPGPAWWQVVPRWHEHWTSNKVYDGDMIVLQ 166

[Close]

BLAST of CsGy1G013970 vs. NCBI nr
Match: XP_008462467.1 (PREDICTED: pheophorbide a oxygenase, chloroplastic [Cucumis melo])

HSP 1 Score: 100.5 bits (249), Expect = 3.1e-18
Identity = 50/74 (67.57%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 1   MWISSFNVLVGPGKIRSIVCTARNFFQFSMAGP----VVPRWHKHWTWNK---------- 60
           +WI SFNV +GPGK RSIVC+ARNFFQFSM GP    VVPRWH+HWT NK          
Sbjct: 334 IWICSFNVPMGPGKTRSIVCSARNFFQFSMPGPAWWQVVPRWHEHWTSNKVYDGDMIVLQ 393

[Close]

BLAST of CsGy1G013970 vs. NCBI nr
Match: KGN64855.1 (hypothetical protein Csa_1G132160 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 3.1e-18
Identity = 50/74 (67.57%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 1   MWISSFNVLVGPGKIRSIVCTARNFFQFSMAGP----VVPRWHKHWTWNK---------- 60
           +WI SFNV +GPGK RSIVC+ARNFFQFSM GP    VVPRWH+HWT NK          
Sbjct: 341 IWICSFNVPMGPGKTRSIVCSARNFFQFSMPGPAWWQVVPRWHEHWTSNKVYDGDMIVLQ 400

[Close]

BLAST of CsGy1G013970 vs. NCBI nr
Match: XP_011654100.1 (PREDICTED: LOW QUALITY PROTEIN: pheophorbide a oxygenase, chloroplastic [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 3.1e-18
Identity = 50/74 (67.57%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 1   MWISSFNVLVGPGKIRSIVCTARNFFQFSMAGP----VVPRWHKHWTWNK---------- 60
           +WI SFNV +GPGK RSIVC+ARNFFQFSM GP    VVPRWH+HWT NK          
Sbjct: 335 IWICSFNVPMGPGKTRSIVCSARNFFQFSMPGPAWWQVVPRWHEHWTSNKVYDGDMIVLQ 394

[Close]

BLAST of CsGy1G013970 vs. TAIR10
Match: AT3G44880.1 (Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain)

HSP 1 Score: 80.9 bits (198), Expect = 4.5e-16
Identity = 38/68 (55.88%), Postives = 48/68 (70.59%), Query Frame = 0


Query: 1   MWISSFNVLVGPGKIRSIVCTARNFFQFSMAGP----VVPRWHKHWTWN----------K 55
           +WI SFN+ + PGK RSIVC+ARNFFQFS+ GP    VVPRW++HWT N          +
Sbjct: 322 IWICSFNIPMAPGKTRSIVCSARNFFQFSVPGPAWWQVVPRWYEHWTSNLVYDGDMIVLQ 381

[Close]

BLAST of CsGy1G013970 vs. Swiss-Prot
Match: sp|Q9FYC2|PAO_ARATH (Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAO PE=1 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 8.2e-15
Identity = 38/68 (55.88%), Postives = 48/68 (70.59%), Query Frame = 0


Query: 1   MWISSFNVLVGPGKIRSIVCTARNFFQFSMAGP----VVPRWHKHWTWN----------K 55
           +WI SFN+ + PGK RSIVC+ARNFFQFS+ GP    VVPRW++HWT N          +
Sbjct: 322 IWICSFNIPMAPGKTRSIVCSARNFFQFSVPGPAWWQVVPRWYEHWTSNLVYDGDMIVLQ 381

[Close]

BLAST of CsGy1G013970 vs. TrEMBL
Match: tr|A0A0A0LSG8|A0A0A0LSG8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G132700 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 6.3e-36
Identity = 76/91 (83.52%), Postives = 76/91 (83.52%), Query Frame = 0


Query: 1  MWISSFNVLVGPGKIRSIVCTARNFFQFSMAGPVVPRWHKHWTWNKGQEKIFLSMEGSTN 60
          MWISSFNVLVGPGKIR IVCTARNFFQFSMAGPVVPRWHKHWTWNK              
Sbjct: 23 MWISSFNVLVGPGKIRFIVCTARNFFQFSMAGPVVPRWHKHWTWNK-------------- 82

Query: 61 KLAESAWKGPKPNSSELAATSACHQQFYLEL 92
          KLAESAWKGPKPNSSELAATSACHQQFYLEL
Sbjct: 83 KLAESAWKGPKPNSSELAATSACHQQFYLEL 99

[Close]

BLAST of CsGy1G013970 vs. TrEMBL
Match: tr|A0A1S3CII7|A0A1S3CII7_CUCME (pheophorbide a oxygenase, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500813 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.0e-18
Identity = 50/74 (67.57%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 1   MWISSFNVLVGPGKIRSIVCTARNFFQFSMAGP----VVPRWHKHWTWNK---------- 60
           +WI SFNV +GPGK RSIVC+ARNFFQFSM GP    VVPRWH+HWT NK          
Sbjct: 334 IWICSFNVPMGPGKTRSIVCSARNFFQFSMPGPAWWQVVPRWHEHWTSNKVYDGDMIVLQ 393

[Close]

BLAST of CsGy1G013970 vs. TrEMBL
Match: tr|C6L809|C6L809_CUCSA (Putative pheide a oxygenase (Fragment) OS=Cucumis sativus OX=3659 GN=CsPAO PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.0e-18
Identity = 50/74 (67.57%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 1   MWISSFNVLVGPGKIRSIVCTARNFFQFSMAGP----VVPRWHKHWTWNK---------- 60
           +WI SFNV +GPGK RSIVC+ARNFFQFSM GP    VVPRWH+HWT NK          
Sbjct: 107 IWICSFNVPMGPGKTRSIVCSARNFFQFSMPGPAWWQVVPRWHEHWTSNKVYDGDMIVLQ 166

[Close]

BLAST of CsGy1G013970 vs. TrEMBL
Match: tr|A0A0A0LSG3|A0A0A0LSG3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G132160 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.0e-18
Identity = 50/74 (67.57%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 1   MWISSFNVLVGPGKIRSIVCTARNFFQFSMAGP----VVPRWHKHWTWNK---------- 60
           +WI SFNV +GPGK RSIVC+ARNFFQFSM GP    VVPRWH+HWT NK          
Sbjct: 341 IWICSFNVPMGPGKTRSIVCSARNFFQFSMPGPAWWQVVPRWHEHWTSNKVYDGDMIVLQ 400

[Close]

BLAST of CsGy1G013970 vs. TrEMBL
Match: tr|A0A0U1VYT7|A0A0U1VYT7_LIQFO (Pheophorbide a oxygenase OS=Liquidambar formosana OX=63359 GN=PaO PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.1e-15
Identity = 45/74 (60.81%), Postives = 51/74 (68.92%), Query Frame = 0


Query: 1   MWISSFNVLVGPGKIRSIVCTARNFFQFSMAGP----VVPRWHKHWTWNK---------- 60
           +WI SFNV + PGK RSIVC+ARNFFQF+M GP    VVPRWH+HWT NK          
Sbjct: 341 IWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWWQVVPRWHEHWTSNKVYDGDMIVLQ 400

The following BLAST results are available for this feature:

BLAST of CsGy1G013970 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64860.1	9.5e-36	83.52	hypothetical protein Csa_1G132700 [Cucumis sativus]	[more]
BAH84856.1	3.1e-18	67.57	putative pheide a oxygenase, partial [Cucumis sativus]	[more]
XP_008462467.1	3.1e-18	67.57	PREDICTED: pheophorbide a oxygenase, chloroplastic [Cucumis melo]	[more]
KGN64855.1	3.1e-18	67.57	hypothetical protein Csa_1G132160 [Cucumis sativus]	[more]
XP_011654100.1	3.1e-18	67.57	PREDICTED: LOW QUALITY PROTEIN: pheophorbide a oxygenase, chloroplastic [Cucumis...	[more]

BLAST of CsGy1G013970 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G44880.1	4.5e-16	55.88	Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain	[more]

BLAST of CsGy1G013970 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FYC2\|PAO_ARATH	8.2e-15	55.88	Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAO P...	[more]

BLAST of CsGy1G013970 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LSG8\|A0A0A0LSG8_CUCSA	6.3e-36	83.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G132700 PE=4 SV=1	[more]
tr\|A0A1S3CII7\|A0A1S3CII7_CUCME	2.0e-18	67.57	pheophorbide a oxygenase, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500813 ...	[more]
tr\|C6L809\|C6L809_CUCSA	2.0e-18	67.57	Putative pheide a oxygenase (Fragment) OS=Cucumis sativus OX=3659 GN=CsPAO PE=2 ...	[more]
tr\|A0A0A0LSG3\|A0A0A0LSG3_CUCSA	2.0e-18	67.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G132160 PE=4 SV=1	[more]
tr\|A0A0U1VYT7\|A0A0U1VYT7_LIQFO	2.1e-15	60.81	Pheophorbide a oxygenase OS=Liquidambar formosana OX=63359 GN=PaO PE=2 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

Vocabulary: **Molecular Function**
Term	Definition
GO:0010277	chlorophyllide a oxygenase [overall] activity

Vocabulary: **INTERPRO**
Term	Definition
IPR013626	PaO

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0010277	chlorophyllide a oxygenase [overall] activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G013970.1	CsGy1G013970.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013626	Pheophorbide a oxygenase	PFAM	PF08417	PaO	coord: 6..45 e-value: 4.7E-5 score: 23.3
None	No IPR available	PANTHER	PTHR21266	IRON-SULFUR DOMAIN CONTAINING PROTEIN	coord: 1..59
None	No IPR available	PANTHER	PTHR21266:SF24	PHEOPHORBIDE A OXYGENASE, CHLOROPLASTIC	coord: 1..59

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G013970	Csa1G132700	Cucumber (Chinese Long) v2	cgybcuB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G013970	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G013970	Watermelon (97103) v2	cgybwmbB003
CsGy1G013970	Wax gourd	cgybwgoB046
CsGy1G013970	Cucurbita maxima (Rimu)	cgybcmaB058
CsGy1G013970	Cucurbita maxima (Rimu)	cgybcmaB061
CsGy1G013970	Cucurbita moschata (Rifu)	cgybcmoB054
CsGy1G013970	Cucurbita moschata (Rifu)	cgybcmoB057
CsGy1G013970	Cucurbita pepo (Zucchini)	cgybcpeB082
CsGy1G013970	Cucurbita pepo (Zucchini)	cgybcpeB142
CsGy1G013970	Bottle gourd (USVL1VR-Ls)	cgyblsiB041
CsGy1G013970	Melon (DHL92) v3.5.1	cgybmeB010
CsGy1G013970	Melon (DHL92) v3.6.1	cgybmedB009
CsGy1G013970	Watermelon (Charleston Gray)	cgybwcgB014
CsGy1G013970	Watermelon (97103) v1	cgybwmB054
CsGy1G013970	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G013970	Silver-seed gourd	carcgybB0180