CsGy1G012680 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G012680
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr1 : 8112771 .. 8113878 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCAGTGTAAGTGACAGCGTCACGAATGACATTTTCGAGGAAGATCTTGAGAACGCCGCGAGTTTCTTCATAGATCAGGCCGCTGATACGCTTTACGCCCCCACGGCGAGCAAGACGGCGGATGGCCGGCTTGGTGATTCCTTGGATGTTGTCCCTCAGAACTTTCCGATGCCTCTTGGCTCCTCCCTTTCCGAGACCTTTTCCTCCTTTGCCTCTGCCGGACATTGTTGGTTGCTTTGGTTGATGGAGATTTCGATGAAGAAAGTGTGCTGAGATAAATGAAGTGTGTCGTAGATGACAGAGTTTGGTAGACTATATAGAGGATGAGATGGAAAGATGGCCGTTGGATGGCGATCCGTGTGTGGAAAGGGTTTTTTCTTGTGACCGTTCGATTTCACATGGATTGGTGTGTCTCGCGGATTGAGGGCTTAAGGCCATCCTAATAACTATTAAGATAAAGAAAATACCTCAAAAACAAAATTAAAATTGCAAAAACCCACTGTACAACTTCAAATTTCAATTTCAACAATTATCATTCGTTTAATATTTTTTAACGATACACATTTGGATGTAGAAGAGATTAGTTCATAGTTTTACTACTAAATTAACTACTCGTCATTATTCTATCTCTTCCATATTATCACTATAACTTACTCAACTATTTATAAATTAATTTTACATTTTATTTTTAGGAAGAAAAGAAAAACAAGTATACTTGATGAACAATTTATTTCATTTTTAGGGTCCTGTGACACACCTTGTATATAAATGTTCACATTCCATTCACGTGGGTATGTTATTTTCTAACTTTTTTTTTCTTTTATTGTTGGATAAATCCTTTTAAAAATCACTTATTTTAGAATACCAATATCCAACCAAAAATCTACACAAATTCTTACAAAATTTGTCAATTTTTTACAGAAAAATTGGAGTAAATTTCAACCCTTTACTAGAAATTGTAATATCTTGGGGAAAAACTTTGTAGTTAGACTTATGATCAAGATTTATCCTAAAGTTTGATTTCGTCAATCTCATTGGAAAAATCATAGAATTTTGTGATTTTTTTTTTTTTGTTCTAGTGAAAGTTAACAGGATCAACATTATG

mRNA sequence

ATGCTCAGTGTAAGTGACAGCGTCACGAATGACATTTTCGAGGAAGATCTTGAGAACGCCGCGAGTTTCTTCATAGATCAGGCCGCTGATACGCTTTACGCCCCCACGGCGAGCAAGACGGCGGATGGCCGGCTTGGTGATTCCTTGGATGTTGTCCCTCAGAACTTTCCGATGCCTCTTGGCTCCTCCCTTTCCGAGACCTTTTCCTCCTTTGCCTCTGCCGGACATTGTTGGTTGCTTTGGTTGATGGAGATTTCGATGAAGAAAAGTTTGGTAGACTATATAGAGGATGAGATGGAAAGATGGCCGTTGGATGGCGATCCGTGTGTGGAAAGGGGTCCTGTGACACACCTTGTATATAAATGTTCACATTCCATTCACGTGGTGAAAGTTAACAGGATCAACATTATG

Coding sequence (CDS)

ATGCTCAGTGTAAGTGACAGCGTCACGAATGACATTTTCGAGGAAGATCTTGAGAACGCCGCGAGTTTCTTCATAGATCAGGCCGCTGATACGCTTTACGCCCCCACGGCGAGCAAGACGGCGGATGGCCGGCTTGGTGATTCCTTGGATGTTGTCCCTCAGAACTTTCCGATGCCTCTTGGCTCCTCCCTTTCCGAGACCTTTTCCTCCTTTGCCTCTGCCGGACATTGTTGGTTGCTTTGGTTGATGGAGATTTCGATGAAGAAAAGTTTGGTAGACTATATAGAGGATGAGATGGAAAGATGGCCGTTGGATGGCGATCCGTGTGTGGAAAGGGGTCCTGTGACACACCTTGTATATAAATGTTCACATTCCATTCACGTGGTGAAAGTTAACAGGATCAACATTATG

Protein sequence

MLSVSDSVTNDIFEEDLENAASFFIDQAADTLYAPTASKTADGRLGDSLDVVPQNFPMPLGSSLSETFSSFASAGHCWLLWLMEISMKKSLVDYIEDEMERWPLDGDPCVERGPVTHLVYKCSHSIHVVKVNRINIM

Homology

[Close]

BLAST of CsGy1G012680 vs. NCBI nr
Match: KYN30768.1 (hypothetical protein ALC56_14579, partial [Trachymyrmex septentrionalis])

HSP 1 Score: 85.9 bits (211), Expect = 1.2e-13
Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 1  MLSVSDSVTNDIFEEDLENAASFFIDQAADTLYAPTASKTADGRLGDSLDVVPQNFPMPL 60
          + SVS+S+ N++ EEDL++ +SFF+DQA DTL A TA +T D  LGD+LDV+ +NFP+ L
Sbjct: 22 VFSVSNSIANNVLEEDLQHTSSFFVDQAGDTLDATTACQTTDSWLGDTLDVIAKNFPVTL 81

Query: 61 GSSLSETFSSFASAGH 77
           SS S++FSS  +  H
Sbjct: 82 RSSFSQSFSSLTATSH 97

[Close]

BLAST of CsGy1G012680 vs. NCBI nr
Match: POS82061.1 (hypothetical protein EPUL_006163, partial [Erysiphe pulchra])

HSP 1 Score: 83.2 bits (204), Expect = 7.6e-13
Identity = 38/76 (50.00%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 1   MLSVSDSVTNDIFEEDLENAASFFIDQAADTLYAPTASKTADGRLGDSLDVVPQNFPMPL 60
           +  V D +T+ + +E LE+AA   +DQA D+ ++ +AS++ADGRLGD+LDVV +N  MPL
Sbjct: 32  VFGVGDGITDHVLQEHLEHAAGLLVDQARDSFHSASASQSADGRLGDTLDVVAENLAMPL 91

Query: 61  GSSLSETFSSFASAGH 77
            +SLSE  +SFA++GH
Sbjct: 92  RASLSEPLASFATSGH 107

[Close]

BLAST of CsGy1G012680 vs. NCBI nr
Match: OCA19173.1 (hypothetical protein XENTR_v90029534mg [Xenopus tropicalis])

HSP 1 Score: 81.3 bits (199), Expect = 2.9e-12
Identity = 37/76 (48.68%), Postives = 55/76 (72.37%), Query Frame = 0


Query: 1   MLSVSDSVTNDIFEEDLENAASFFIDQAADTLYAPTASKTADGRLGDSLDVVPQNFPMPL 60
           +L V D V +DI +E+LE+  S  ID+A D L +P+  + ADG LGD+LDV+PQ+ P+PL
Sbjct: 47  VLGVGDGVPDDILQENLEDPPSLLIDEARDALDSPSPCQAADGGLGDALDVIPQHLPVPL 106

Query: 61  GSSLSETFSSFASAGH 77
           G+S  +T  +FA++GH
Sbjct: 107 GASFPQTLPAFAASGH 122

[Close]

BLAST of CsGy1G012680 vs. NCBI nr
Match: OCA19179.1 (hypothetical protein XENTR_v90029540mg, partial [Xenopus tropicalis])

HSP 1 Score: 81.3 bits (199), Expect = 2.9e-12
Identity = 37/76 (48.68%), Postives = 55/76 (72.37%), Query Frame = 0


Query: 1   MLSVSDSVTNDIFEEDLENAASFFIDQAADTLYAPTASKTADGRLGDSLDVVPQNFPMPL 60
           +L V D V +DI +E+LE+  S  ID+A D L +P+  + ADG LGD+LDV+PQ+ P+PL
Sbjct: 29  VLGVGDGVPDDILQENLEDPPSLLIDEARDALDSPSPCQAADGGLGDALDVIPQHLPVPL 88

Query: 61  GSSLSETFSSFASAGH 77
           G+S  +T  +FA++GH
Sbjct: 89  GASFPQTLPAFAASGH 104

[Close]

BLAST of CsGy1G012680 vs. NCBI nr
Match: OCT58879.1 (hypothetical protein XELAEV_18001368mg, partial [Xenopus laevis])

HSP 1 Score: 81.3 bits (199), Expect = 2.9e-12
Identity = 39/82 (47.56%), Postives = 58/82 (70.73%), Query Frame = 0


Query: 1   MLSVSDSVTNDIFEEDLENAASFFIDQAADTLYAPTASKTADGRLGDSLDVVPQNFPMPL 60
           +L V D V +DI +E+LE+  S  ID+A D L +P+  + ADG LGD+LDVVP++ P+PL
Sbjct: 34  VLGVGDGVPDDILQENLEDPTSLLIDEARDALDSPSPGQAADGGLGDALDVVPEHLPVPL 93

Query: 61  GSSLSETFSSFASAGHCWLLWL 83
           GSS  ++FSSF ++ H   L++
Sbjct: 94  GSSFPQSFSSFTTSRHSHQLFV 115

[Close]

BLAST of CsGy1G012680 vs. TrEMBL
Match: tr|A0A1X7VLY4|A0A1X7VLY4_AMPQE (Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 5.4e-15
Identity = 45/76 (59.21%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 1   MLSVSDSVTNDIFEEDLENAASFFIDQAADTLYAPTASKTADGRLGDSLDVVPQNFPMPL 60
           ML VSDS+T+DI EEDL+  +   ID+A DTL   TASKT +G LGDSLDVV ++ P+ L
Sbjct: 42  MLCVSDSITDDILEEDLQYTSCLLIDEARDTLDTTTASKTTNGGLGDSLDVVTKDLPVTL 101

Query: 61  GSSLSETFSSFASAGH 77
           G+SLSETF+SF+++ H
Sbjct: 102 GASLSETFASFSTSRH 117

[Close]

BLAST of CsGy1G012680 vs. TrEMBL
Match: tr|A0A182WM75|A0A182WM75_9DIPT (Uncharacterized protein OS=Anopheles minimus OX=112268 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.5e-14
Identity = 38/76 (50.00%), Postives = 58/76 (76.32%), Query Frame = 0


Query: 1   MLSVSDSVTNDIFEEDLENAASFFIDQAADTLYAPTASKTADGRLGDSLDVVPQNFPMPL 60
           +  + D +T++IF++  ++AA FF+D+  DTL++ TA +T DGRLGDSLDVV Q+F M L
Sbjct: 36  VFGIGDRITDNIFQKHFQHAARFFVDETRDTLHSSTAGQTTDGRLGDSLDVVTQHFTMTL 95

Query: 61  GSSLSETFSSFASAGH 77
           GSS ++TF+SF++  H
Sbjct: 96  GSSFTQTFASFSTTSH 111

[Close]

BLAST of CsGy1G012680 vs. TrEMBL
Match: tr|A0A147AFN0|A0A147AFN0_FUNHE (Uncharacterized protein (Fragment) OS=Fundulus heteroclitus OX=8078 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.5e-14
Identity = 39/77 (50.65%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 1   MLSVSDSVTNDIFEEDLENAASFFIDQAADTLYAPTASKTADGRLGDSLDVVPQNFPMPL 60
           +L V D VT+D+ +EDL++ A   +D+A D L +P AS+TADG LGDSLDV+ ++F + L
Sbjct: 71  VLGVGDGVTDDVLQEDLQHTAGLLVDEARDALDSPAASQTADGGLGDSLDVIAEDFTVTL 130

Query: 61  GSSLSETFSSFASAGHC 78
           G+S +++ SSFAS+ HC
Sbjct: 131 GASFAQSLSSFASSAHC 147

[Close]

BLAST of CsGy1G012680 vs. TrEMBL
Match: tr|A0A195ERC2|A0A195ERC2_9HYME (Uncharacterized protein (Fragment) OS=Trachymyrmex septentrionalis OX=34720 GN=ALC56_14579 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 7.8e-14
Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 1  MLSVSDSVTNDIFEEDLENAASFFIDQAADTLYAPTASKTADGRLGDSLDVVPQNFPMPL 60
          + SVS+S+ N++ EEDL++ +SFF+DQA DTL A TA +T D  LGD+LDV+ +NFP+ L
Sbjct: 22 VFSVSNSIANNVLEEDLQHTSSFFVDQAGDTLDATTACQTTDSWLGDTLDVIAKNFPVTL 81

Query: 61 GSSLSETFSSFASAGH 77
           SS S++FSS  +  H
Sbjct: 82 RSSFSQSFSSLTATSH 97

[Close]

BLAST of CsGy1G012680 vs. TrEMBL
Match: tr|A0A2S4PJ56|A0A2S4PJ56_9PEZI (Uncharacterized protein (Fragment) OS=Erysiphe pulchra OX=225359 GN=EPUL_006163 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 5.0e-13
Identity = 38/76 (50.00%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 1   MLSVSDSVTNDIFEEDLENAASFFIDQAADTLYAPTASKTADGRLGDSLDVVPQNFPMPL 60
           +  V D +T+ + +E LE+AA   +DQA D+ ++ +AS++ADGRLGD+LDVV +N  MPL
Sbjct: 32  VFGVGDGITDHVLQEHLEHAAGLLVDQARDSFHSASASQSADGRLGDTLDVVAENLAMPL 91

Query: 61  GSSLSETFSSFASAGH 77
            +SLSE  +SFA++GH
Sbjct: 92  RASLSEPLASFATSGH 107

The following BLAST results are available for this feature:

BLAST of CsGy1G012680 vs. NCBI nr


Match Name	E-value	Identity	Description
KYN30768.1	1.2e-13	52.63	hypothetical protein ALC56_14579, partial [Trachymyrmex septentrionalis]	[more]
POS82061.1	7.6e-13	50.00	hypothetical protein EPUL_006163, partial [Erysiphe pulchra]	[more]
OCA19173.1	2.9e-12	48.68	hypothetical protein XENTR_v90029534mg [Xenopus tropicalis]	[more]
OCA19179.1	2.9e-12	48.68	hypothetical protein XENTR_v90029540mg, partial [Xenopus tropicalis]	[more]
OCT58879.1	2.9e-12	47.56	hypothetical protein XELAEV_18001368mg, partial [Xenopus laevis]	[more]

BLAST of CsGy1G012680 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G012680 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G012680 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1X7VLY4\|A0A1X7VLY4_AMPQE	5.4e-15	59.21	Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1	[more]
tr\|A0A182WM75\|A0A182WM75_9DIPT	3.5e-14	50.00	Uncharacterized protein OS=Anopheles minimus OX=112268 PE=4 SV=1	[more]
tr\|A0A147AFN0\|A0A147AFN0_FUNHE	3.5e-14	50.65	Uncharacterized protein (Fragment) OS=Fundulus heteroclitus OX=8078 PE=4 SV=1	[more]
tr\|A0A195ERC2\|A0A195ERC2_9HYME	7.8e-14	52.63	Uncharacterized protein (Fragment) OS=Trachymyrmex septentrionalis OX=34720 GN=A...	[more]
tr\|A0A2S4PJ56\|A0A2S4PJ56_9PEZI	5.0e-13	50.00	Uncharacterized protein (Fragment) OS=Erysiphe pulchra OX=225359 GN=EPUL_006163 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0043229	intracellular organelle
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G012680.1	CsGy1G012680.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G012680	Carg21052	Silver-seed gourd	carcgybB0723

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G012680	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G012680	Wild cucumber (PI 183967)	cgybcpiB043
CsGy1G012680	Silver-seed gourd	carcgybB0449
CsGy1G012680	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G012680	Cucumber (Chinese Long) v3	cgybcucB050
CsGy1G012680	Watermelon (97103) v2	cgybwmbB034
CsGy1G012680	Wax gourd	cgybwgoB034
CsGy1G012680	Cucumber (Gy14) v2	cgybcgybB040
CsGy1G012680	Cucurbita maxima (Rimu)	cgybcmaB061
CsGy1G012680	Cucurbita maxima (Rimu)	cgybcmaB110
CsGy1G012680	Cucurbita moschata (Rifu)	cgybcmoB057
CsGy1G012680	Cucurbita moschata (Rifu)	cgybcmoB104
CsGy1G012680	Cucurbita pepo (Zucchini)	cgybcpeB084
CsGy1G012680	Cucurbita pepo (Zucchini)	cgybcpeB090
CsGy1G012680	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G012680	Cucumber (Chinese Long) v2	cgybcuB046
CsGy1G012680	Bottle gourd (USVL1VR-Ls)	cgyblsiB020
CsGy1G012680	Melon (DHL92) v3.5.1	cgybmeB009
CsGy1G012680	Melon (DHL92) v3.5.1	cgybmeB010
CsGy1G012680	Melon (DHL92) v3.6.1	cgybmedB009
CsGy1G012680	Watermelon (Charleston Gray)	cgybwcgB035
CsGy1G012680	Watermelon (97103) v1	cgybwmB012