Carg21052 (gene) Silver-seed gourd

Overview
NameCarg21052
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionHistone 4
LocationCucurbita_argyrosperma_scaffold_122 : 603577 .. 604719 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTCGCAAGCAAGATTGGCAAGATCGATCCAGTCAAGGCAAACTAAGCTGTGTGTAAATGAGAGATTTGTGGTGTTGTTTACTTGTGTTTTCAAGTCAATGAGGAATTGGCTTCAAAGGCTTTCTTTTTGGTTGTTTTTTCATGGCGTTTTGCAGAAGCAAGCTGCAATGTTCTTCCCAGTGGTGGATGAGTTCATTGAGTCCATTTGTGAGAAAGTTCATGTTATGAAGATTTGTGTTTCATAGAACAAATCATTCCTACGTTCGGTTCAAGTTAAACTACCAAAAATTTGAATTACAAAAAGACACTGATATTTAACAATCATAATGAAAATTATCGTTTATTCTAAAACAATTTGGCAATTTAATTAGCATAATCGAATCCCTTCGCAATCGAAAGTGAATGCGGGAGATCGAAAACTTCTAAAATTTTCAAATATCTCTTGAATTGTCAGAGAAAGAGATTGTGAAATTTTCATCTGGAAAAGCATTGCATGAAGATTACATCTGAAAACGATCTAAAATACTCTGGGAGTTGAGAGTATCGTTTAGAAATCAGATCCAACAAACAGAAGCATGGTAAGTTTAGAGTCTGAAACAAACAGTTTCTAAGTAGACAAAAGAAGATTTCCAGTTACAGAATAATCCATCAAACGAGAGATACGATTAGCTCGCTGCTGATCGAAATCAACGTTCAAGGCTAACATAATCAGCAATAATATACAGTTTTTCTCCAGAATCAGAACCAGTTTCCACATTCAAACCACCGAAATCATTTAGTCTCCAATATCCAAGCCCTAGATCCTAAAATCCCTAACCTCCAAAGCCGTAAAGAGTGCGACCTTGCCTCTTGAGAGCATACACAACATCCATGGCGGTGACGGTCTTCCGGCGAGCGTGCTCGGTGTAGGTGACAGCATCGCGAATGACATTCTCGAGGAAGATCTTGAGAACGCCGCGAGTCTCCTCGTAGATCAGGCCGCTGATACGCTTTACGCCGCCTCGCCTGGCCAGACGCCGAATTGCCGGCTTCGTGATTCCTTGAATGTTATCTCTCAAAACCTTCCGATGCCTCTTCGCTCCTCCTTTTCCAAGGCCCTTTCCTCCCTTGCCTCTGCCGGACATTGTCGCTGTGCTTAA

mRNA sequence

ATGGTTTCGCAAGCAAGATTGGCAAGATCGATCCAGTCAAGGCAAACTAAGCTGTGTAAGCAAGCTGCAATGTTCTTCCCAGTGGTGGATGAGTTCATTGAGTCCATTTGTGAGAAAGTTCATATCCTAAAATCCCTAACCTCCAAAGCCGTAAAGAGTGCGACCTTGCCTCTTGAGAGCATACACAACATCCATGGCGGTGACGGTCTTCCGGCGAGCGTGCTCGGTGTAGGTGACAGCATCGCGAATGACATTCTCGAGGAAGATCTTGAGAACGCCGCGAGTCTCCTCGTAGATCAGGCCGCTGATACGCTTTACGCCGCCTCGCCTGGCCAGACGCCGAATTGCCGGCTTCGTGATTCCTTGAATGTTATCTCTCAAAACCTTCCGATGCCTCTTCGCTCCTCCTTTTCCAAGGCCCTTTCCTCCCTTGCCTCTGCCGGACATTGTCGCTGTGCTTAA

Coding sequence (CDS)

ATGGTTTCGCAAGCAAGATTGGCAAGATCGATCCAGTCAAGGCAAACTAAGCTGTGTAAGCAAGCTGCAATGTTCTTCCCAGTGGTGGATGAGTTCATTGAGTCCATTTGTGAGAAAGTTCATATCCTAAAATCCCTAACCTCCAAAGCCGTAAAGAGTGCGACCTTGCCTCTTGAGAGCATACACAACATCCATGGCGGTGACGGTCTTCCGGCGAGCGTGCTCGGTGTAGGTGACAGCATCGCGAATGACATTCTCGAGGAAGATCTTGAGAACGCCGCGAGTCTCCTCGTAGATCAGGCCGCTGATACGCTTTACGCCGCCTCGCCTGGCCAGACGCCGAATTGCCGGCTTCGTGATTCCTTGAATGTTATCTCTCAAAACCTTCCGATGCCTCTTCGCTCCTCCTTTTCCAAGGCCCTTTCCTCCCTTGCCTCTGCCGGACATTGTCGCTGTGCTTAA

Protein sequence

MVSQARLARSIQSRQTKLCKQAAMFFPVVDEFIESICEKVHILKSLTSKAVKSATLPLESIHNIHGGDGLPASVLGVGDSIANDILEEDLENAASLLVDQAADTLYAASPGQTPNCRLRDSLNVISQNLPMPLRSSFSKALSSLASAGHCRCA
Homology
[Close]
BLAST of Carg21052 vs. NCBI nr
Match: OCT58879.1 (hypothetical protein XELAEV_18001368mg, partial [Xenopus laevis])

HSP 1 Score: 111.3 bits (277), Expect = 2.9e-21
Identity = 54/106 (50.94%), Postives = 81/106 (76.42%), Query Frame = 0 

Query: 44  KSLTSKAVKSATLPLESIHNIHGGDGLPASVLGVGDSIANDILEEDLENAASLLVDQAAD 103
           + L+++AV+SA L LES+H+IHGG+GLP  VLGVGD + +DIL+E+LE+  SLL+D+A D
Sbjct: 4   RDLSAEAVESAALALESVHHIHGGNGLPLGVLGVGDGVPDDILQENLEDPTSLLIDEARD 63

Query: 104 TLYAASPGQTPNCRLRDSLNVISQNLPMPLRSSFSKALSSLASAGH 150
            L + SPGQ  +  L D+L+V+ ++LP+PL SSF ++ SS  ++ H
Sbjct: 64  ALDSPSPGQAADGGLGDALDVVPEHLPVPLGSSFPQSFSSFTTSRH 109

[Close]
BLAST of Carg21052 vs. NCBI nr
Match: POS82061.1 (hypothetical protein EPUL_006163, partial [Erysiphe pulchra])

HSP 1 Score: 109.4 bits (272), Expect = 1.1e-20
Identity = 53/104 (50.96%), Postives = 79/104 (75.96%), Query Frame = 0 

Query: 46  LTSKAVKSATLPLESIHNIHGGDGLPASVLGVGDSIANDILEEDLENAASLLVDQAADTL 105
           LT++ V+SA L  + + ++HGGDGLP  V GVGD I + +L+E LE+AA LLVDQA D+ 
Sbjct: 4   LTAEPVESAALAFQRVDDVHGGDGLPLGVFGVGDGITDHVLQEHLEHAAGLLVDQARDSF 63

Query: 106 YAASPGQTPNCRLRDSLNVISQNLPMPLRSSFSKALSSLASAGH 150
           ++AS  Q+ + RL D+L+V+++NL MPLR+S S+ L+S A++GH
Sbjct: 64  HSASASQSADGRLGDTLDVVAENLAMPLRASLSEPLASFATSGH 107

[Close]
BLAST of Carg21052 vs. NCBI nr
Match: OCT55877.1 (hypothetical protein XELAEV_18002443mg [Xenopus laevis])

HSP 1 Score: 107.8 bits (268), Expect = 3.2e-20
Identity = 57/111 (51.35%), Postives = 80/111 (72.07%), Query Frame = 0 

Query: 39  KVHILKSLTSKAVKSATLPLESIHNIHGGDGLPASVLGVGDSIANDILEEDLENAASLLV 98
           K+   K L++KAV+SA L LES+H+IHGG+GLP  VL VGD I + IL+E+LEN  SLL+
Sbjct: 14  KISWKKDLSAKAVESAALALESVHHIHGGNGLPLGVLSVGDGIPDYILQENLENPTSLLI 73

Query: 99  DQAADTLYAASPGQTPNCRLRDSLNVISQNLPMPLRSSFSKALSSLASAGH 150
           D+  D L + SP Q  +  L D+L+V+ ++L MPL +SF K+LSS A++ H
Sbjct: 74  DETRDALDSPSPCQAADGGLGDALDVVPEHLSMPLGASFPKSLSSFAASRH 124

[Close]
BLAST of Carg21052 vs. NCBI nr
Match: OCA19173.1 (hypothetical protein XENTR_v90029534mg [Xenopus tropicalis])

HSP 1 Score: 107.5 bits (267), Expect = 4.2e-20
Identity = 54/103 (52.43%), Postives = 78/103 (75.73%), Query Frame = 0 

Query: 49  KAVKSATLPLESIHNIHGGDGLPASVLGVGDSIANDILEEDLENAASLLVDQAADTLYAA 108
           +AV+SA L LES+H+IHGG+GLP  VLGVGD + +DIL+E+LE+  SLL+D+A D L + 
Sbjct: 22  EAVESAALALESVHHIHGGNGLPLGVLGVGDGVPDDILQENLEDPPSLLIDEARDALDSP 81

Query: 109 SPGQTPNCRLRDSLNVISQNLPMPLRSSFSKALSSLASAGHCR 152
           SP Q  +  L D+L+VI Q+LP+PL +SF + L + A++GH +
Sbjct: 82  SPCQAADGGLGDALDVIPQHLPVPLGASFPQTLPAFAASGHLK 124

[Close]
BLAST of Carg21052 vs. NCBI nr
Match: OCA19179.1 (hypothetical protein XENTR_v90029540mg, partial [Xenopus tropicalis])

HSP 1 Score: 107.5 bits (267), Expect = 4.2e-20
Identity = 54/103 (52.43%), Postives = 78/103 (75.73%), Query Frame = 0 

Query: 49  KAVKSATLPLESIHNIHGGDGLPASVLGVGDSIANDILEEDLENAASLLVDQAADTLYAA 108
           +AV+SA L LES+H+IHGG+GLP  VLGVGD + +DIL+E+LE+  SLL+D+A D L + 
Sbjct: 4   EAVESAALALESVHHIHGGNGLPLGVLGVGDGVPDDILQENLEDPPSLLIDEARDALDSP 63

Query: 109 SPGQTPNCRLRDSLNVISQNLPMPLRSSFSKALSSLASAGHCR 152
           SP Q  +  L D+L+VI Q+LP+PL +SF + L + A++GH +
Sbjct: 64  SPCQAADGGLGDALDVIPQHLPVPLGASFPQTLPAFAASGHLK 106

[Close]
BLAST of Carg21052 vs. TrEMBL
Match: tr|A0A0E0CUB3|A0A0E0CUB3_9ORYZ (Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.7e-22
Identity = 57/102 (55.88%), Postives = 81/102 (79.41%), Query Frame = 0 

Query: 48  SKAVKSATLPLESIHNIHGGDGLPASVLGVGDSIANDILEEDLENAASLLVDQAADTLYA 107
           ++AV+ ATL LE + ++HGGDGL A VL VGD +A+D+LEEDLE+AA LLVDQ  D L+A
Sbjct: 24  AEAVEGATLALERVDDVHGGDGLAAGVLRVGDGVADDVLEEDLEHAAGLLVDQPGDALHA 83

Query: 108 ASPGQTPNCRLRDSLNVISQNLPMPLRSSFSKALSSLASAGH 150
           A P Q P+ RL D+L+V++Q+L +PLR++ ++ L+SLA+A H
Sbjct: 84  APPRQPPDRRLGDALDVVAQHLSVPLRAALAETLASLAAARH 125

[Close]
BLAST of Carg21052 vs. TrEMBL
Match: tr|A0A147AJK9|A0A147AJK9_FUNHE (Uncharacterized protein (Fragment) OS=Fundulus heteroclitus OX=8078 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.7e-22
Identity = 59/111 (53.15%), Postives = 82/111 (73.87%), Query Frame = 0 

Query: 43  LKSLTSKAVKSATLPLESIHNIHGGDGLPASVLGVGDSIANDILEEDLENAASLLVDQAA 102
           L  L S+AV+SA LPLES+H+IHGGD LP SVLGVGD + + +L+EDL++ ASLLVDQ  
Sbjct: 24  LVGLASEAVESAALPLESVHHIHGGDRLPLSVLGVGDGVPDHVLQEDLQHTASLLVDQTR 83

Query: 103 DTLYAASPGQTPNCRLRDSLNVISQNLPMPLRSSFSKALSSLASAGHCRCA 154
           DTL +A+  Q  +  L DSLNVI+++  +PL +SF ++ +S A++ HC  A
Sbjct: 84  DTLDSAAASQAADSGLGDSLNVITEDFTVPLGASFPESFTSFAASTHCYTA 134

[Close]
BLAST of Carg21052 vs. TrEMBL
Match: tr|A0A147AFN0|A0A147AFN0_FUNHE (Uncharacterized protein (Fragment) OS=Fundulus heteroclitus OX=8078 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.9e-21
Identity = 55/106 (51.89%), Postives = 80/106 (75.47%), Query Frame = 0 

Query: 45  SLTSKAVKSATLPLESIHNIHGGDGLPASVLGVGDSIANDILEEDLENAASLLVDQAADT 104
           SL S+AV+ A LPL+S+H+IHGGD LP  VLGVGD + +D+L+EDL++ A LLVD+A D 
Sbjct: 42  SLASEAVQGAALPLQSVHHIHGGDRLPLGVLGVGDGVTDDVLQEDLQHTAGLLVDEARDA 101

Query: 105 LYAASPGQTPNCRLRDSLNVISQNLPMPLRSSFSKALSSLASAGHC 151
           L + +  QT +  L DSL+VI+++  + L +SF+++LSS AS+ HC
Sbjct: 102 LDSPAASQTADGGLGDSLDVIAEDFTVTLGASFAQSLSSFASSAHC 147

[Close]
BLAST of Carg21052 vs. TrEMBL
Match: tr|A0A1J3E1Q1|A0A1J3E1Q1_NOCCA (Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=GA_TR14670_c0_g1_i1_g.45534 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.3e-21
Identity = 58/115 (50.43%), Postives = 83/115 (72.17%), Query Frame = 0 

Query: 33  IESICEKVHILKSLTSKAVKSATLPLESIHNIHGGDGLPASVLGVGDSIANDILEEDLEN 92
           I   CE   I    T+++++S  L L+ IHNIH    LP  VL V  S+++DILE+DL+N
Sbjct: 60  IAKYCENRRIQIFSTAESIESTALSLQRIHNIHCSHRLPPRVLSVSHSVSDDILEKDLQN 119

Query: 93  AASLLVDQAADTLYAASPGQTPNCRLRDSLNVISQNLPMPLRSSFSKALSSLASA 148
           ++   VDQAAD+L+A+S  ++PN RLRDSL+V+SQNLP+ LRSSF ++LSS +S+
Sbjct: 120 SSRFFVDQAADSLHASSTSKSPNRRLRDSLDVVSQNLPVSLRSSFPQSLSSFSSS 174

[Close]
BLAST of Carg21052 vs. TrEMBL
Match: tr|A0A2S4PJ56|A0A2S4PJ56_9PEZI (Uncharacterized protein (Fragment) OS=Erysiphe pulchra OX=225359 GN=EPUL_006163 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 7.3e-21
Identity = 53/104 (50.96%), Postives = 79/104 (75.96%), Query Frame = 0 

Query: 46  LTSKAVKSATLPLESIHNIHGGDGLPASVLGVGDSIANDILEEDLENAASLLVDQAADTL 105
           LT++ V+SA L  + + ++HGGDGLP  V GVGD I + +L+E LE+AA LLVDQA D+ 
Sbjct: 4   LTAEPVESAALAFQRVDDVHGGDGLPLGVFGVGDGITDHVLQEHLEHAAGLLVDQARDSF 63

Query: 106 YAASPGQTPNCRLRDSLNVISQNLPMPLRSSFSKALSSLASAGH 150
           ++AS  Q+ + RL D+L+V+++NL MPLR+S S+ L+S A++GH
Sbjct: 64  HSASASQSADGRLGDTLDVVAENLAMPLRASLSEPLASFATSGH 107

The following BLAST results are available for this feature:
BLAST of Carg21052 vs. NCBI nr
Match NameE-valueIdentityDescription
OCT58879.12.9e-2150.94hypothetical protein XELAEV_18001368mg, partial [Xenopus laevis][more]
POS82061.11.1e-2050.96hypothetical protein EPUL_006163, partial [Erysiphe pulchra][more]
OCT55877.13.2e-2051.35hypothetical protein XELAEV_18002443mg [Xenopus laevis][more]
OCA19173.14.2e-2052.43hypothetical protein XENTR_v90029534mg [Xenopus tropicalis][more]
OCA19179.14.2e-2052.43hypothetical protein XENTR_v90029540mg, partial [Xenopus tropicalis][more]
BLAST of Carg21052 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg21052 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg21052 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0E0CUB3|A0A0E0CUB3_9ORYZ1.7e-2255.88Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1[more]
tr|A0A147AJK9|A0A147AJK9_FUNHE1.7e-2253.15Uncharacterized protein (Fragment) OS=Fundulus heteroclitus OX=8078 PE=4 SV=1[more]
tr|A0A147AFN0|A0A147AFN0_FUNHE1.9e-2151.89Uncharacterized protein (Fragment) OS=Fundulus heteroclitus OX=8078 PE=4 SV=1[more]
tr|A0A1J3E1Q1|A0A1J3E1Q1_NOCCA3.3e-2150.43Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=GA_TR146... [more]
tr|A0A2S4PJ56|A0A2S4PJ56_9PEZI7.3e-2150.96Uncharacterized protein (Fragment) OS=Erysiphe pulchra OX=225359 GN=EPUL_006163 ... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg21052-RACarg21052-RAmRNA