CsGy1G012390 (gene) Cucumber (Gy14) v2

NameCsGy1G012390
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionAlpha-1,4 glucan phosphorylase
LocationChr1 : 7803444 .. 7804443 (-)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCAAAGTATGTTCTGCTGGAGTGTACACAAAAAAATTAGGGCTGAGGTGTTATGCTGATGTATTAACTAAATTTGTTGGCTTCTGACTAGATACAAGCCCTGAAGGTCCGCCAGCAATTTGCTCTAACCAGATGCACCTTTGTGAAGGTAATTGTTGGACACGTTTTTGTAATAACATTTTCTCTCTTACTCTGGCTTACAAGTTATTCGTGCATTAGGGTTGCCTAAACTTTTACAGAGCGTTGCAATATGAATTATAACCTATGTTAGTATGAAAGGACTTTAAACATTTCACATTTGTTCCAAATAATTTCACGTGTAGGCTTTATTGAATGTTCATCTTGTTTATAGTTGGTGAACACGCGTTTTGCCAATCAACTTCAGAAGGCCTTTCAGACGTTGAACCATCATGTTTTCAGCAAAGTTCCTACCTTGAGTTCCAGGGTTACAGGAGCCATCCATTACTTCCAAAGAGTCTATGAAGAAGCCAAAAAGTATCACCACGAGGTATGTGTATTTGTCAATGGAAAGCTTAATCTAATAATTTCTGCAAAGACGCATGGGAATAAAACGTTGCTCGCCATATAGATTTTTGTAAATTGTGCTACCTCCATGCTCTCCATCTTTTAATCTTTGATTTGACATTTGCATTTCTTATACCAGAATATAGATATTGCTGTGGAATATGCATTGCCAATCGCATCTATATGCCTCTTCCTAGTGACTATATAAAGTTTGAATGTTGATATCTGCAGTTGCAAAGACTGATTAAACAAGAAATGGAAAGAAATGAATATGCTGCACATCTTGCCAACCCGGAATTGATTTTCTTTTTGGTAAGCCCGACAAAAACCATGACATTGACTCTTCATTTAGAACTCTCTCCTTTTTTTTTCTACTTTCAGAATGTAATCATGTTTTCTGGATTTTTAGGCGTCTGCTCTTGCTATCTTCCCAATTTTTGGTGCTTGGATGTTCCTCTCTTCGTGGTTTTCC

mRNA sequence

ATGTCCAAAATACAAGCCCTGAAGGTCCGCCAGCAATTTGCTCTAACCAGATGCACCTTTGTGAAGTTGGTGAACACGCGTTTTGCCAATCAACTTCAGAAGGCCTTTCAGACGTTGAACCATCATGTTTTCAGCAAAGTTCCTACCTTGAGTTCCAGGGTTACAGGAGCCATCCATTACTTCCAAAGAGTCTATGAAGAAGCCAAAAAGTATCACCACGAGTTGCAAAGACTGATTAAACAAGAAATGGAAAGAAATGAATATGCTGCACATCTTGCCAACCCGGAATTGATTTTCTTTTTGGCGTCTGCTCTTGCTATCTTCCCAATTTTTGGTGCTTGGATGTTCCTCTCTTCGTGGTTTTCC

Coding sequence (CDS)

ATGTCCAAAATACAAGCCCTGAAGGTCCGCCAGCAATTTGCTCTAACCAGATGCACCTTTGTGAAGTTGGTGAACACGCGTTTTGCCAATCAACTTCAGAAGGCCTTTCAGACGTTGAACCATCATGTTTTCAGCAAAGTTCCTACCTTGAGTTCCAGGGTTACAGGAGCCATCCATTACTTCCAAAGAGTCTATGAAGAAGCCAAAAAGTATCACCACGAGTTGCAAAGACTGATTAAACAAGAAATGGAAAGAAATGAATATGCTGCACATCTTGCCAACCCGGAATTGATTTTCTTTTTGGCGTCTGCTCTTGCTATCTTCCCAATTTTTGGTGCTTGGATGTTCCTCTCTTCGTGGTTTTCC

Protein sequence

MSKIQALKVRQQFALTRCTFVKLVNTRFANQLQKAFQTLNHHVFSKVPTLSSRVTGAIHYFQRVYEEAKKYHHELQRLIKQEMERNEYAAHLANPELIFFLASALAIFPIFGAWMFLSSWFS
BLAST of CsGy1G012390 vs. NCBI nr
Match: XP_004146617.1 (PREDICTED: uncharacterized protein LOC101213056 isoform X1 [Cucumis sativus] >KGN64703.1 hypothetical protein Csa_1G075570 [Cucumis sativus])

HSP 1 Score: 238.0 bits (606), Expect = 1.6e-59
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0

Query: 1   MSKIQALKVRQQFALTRCTFVKLVNTRFANQLQKAFQTLNHHVFSKVPTLSSRVTGAIHY 60
           MSKIQALKVRQQFALTRCTFVKLVNTRFANQLQKAFQTLNHHVFSKVPTLSSRVTGAIHY
Sbjct: 169 MSKIQALKVRQQFALTRCTFVKLVNTRFANQLQKAFQTLNHHVFSKVPTLSSRVTGAIHY 228

Query: 61  FQRVYEEAKKYHHELQRLIKQEMERNEYAAHLANPELIFFLASALAIFPIFGAWMFLSSW 120
           FQRVYEEAKKYHHELQRLIKQEMERNEYAAHLANPELIFFLASALAIFPIFGAWMFLSSW
Sbjct: 229 FQRVYEEAKKYHHELQRLIKQEMERNEYAAHLANPELIFFLASALAIFPIFGAWMFLSSW 288

Query: 121 FS 123
           FS
Sbjct: 289 FS 290

BLAST of CsGy1G012390 vs. NCBI nr
Match: XP_011653316.1 (PREDICTED: uncharacterized protein LOC101213056 isoform X2 [Cucumis sativus])

HSP 1 Score: 238.0 bits (606), Expect = 1.6e-59
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0

Query: 1   MSKIQALKVRQQFALTRCTFVKLVNTRFANQLQKAFQTLNHHVFSKVPTLSSRVTGAIHY 60
           MSKIQALKVRQQFALTRCTFVKLVNTRFANQLQKAFQTLNHHVFSKVPTLSSRVTGAIHY
Sbjct: 77  MSKIQALKVRQQFALTRCTFVKLVNTRFANQLQKAFQTLNHHVFSKVPTLSSRVTGAIHY 136

Query: 61  FQRVYEEAKKYHHELQRLIKQEMERNEYAAHLANPELIFFLASALAIFPIFGAWMFLSSW 120
           FQRVYEEAKKYHHELQRLIKQEMERNEYAAHLANPELIFFLASALAIFPIFGAWMFLSSW
Sbjct: 137 FQRVYEEAKKYHHELQRLIKQEMERNEYAAHLANPELIFFLASALAIFPIFGAWMFLSSW 196

Query: 121 FS 123
           FS
Sbjct: 197 FS 198

BLAST of CsGy1G012390 vs. NCBI nr
Match: XP_008465616.1 (PREDICTED: uncharacterized protein LOC103503257, partial [Cucumis melo])

HSP 1 Score: 220.7 bits (561), Expect = 2.7e-54
Identity = 112/119 (94.12%), Postives = 114/119 (95.80%), Query Frame = 0

Query: 4   IQALKVRQQFALTRCTFVKLVNTRFANQLQKAFQTLNHHVFSKVPTLSSRVTGAIHYFQR 63
           IQALKVRQQ ALTRCTFVKLVNTRF NQLQ+AFQTLNHH+F KVPTLSSRVTGAIHYFQR
Sbjct: 1   IQALKVRQQVALTRCTFVKLVNTRFVNQLQQAFQTLNHHLFQKVPTLSSRVTGAIHYFQR 60

Query: 64  VYEEAKKYHHELQRLIKQEMERNEYAAHLANPELIFFLASALAIFPIFGAWMFLSSWFS 123
           VYEEAKKYHHELQRLIKQEMERNEYAAHLANPE IFFLASALA FPIFGAWMFLSSWFS
Sbjct: 61  VYEEAKKYHHELQRLIKQEMERNEYAAHLANPEFIFFLASALATFPIFGAWMFLSSWFS 119

BLAST of CsGy1G012390 vs. NCBI nr
Match: XP_022955165.1 (uncharacterized protein LOC111457212 [Cucurbita moschata] >XP_022955166.1 uncharacterized protein LOC111457212 [Cucurbita moschata])

HSP 1 Score: 197.6 bits (501), Expect = 2.5e-47
Identity = 101/122 (82.79%), Postives = 110/122 (90.16%), Query Frame = 0

Query: 1   MSKIQALKVRQQFALTRCTFVKLVNTRFANQLQKAFQTLNHHVFSKVPTLSSRVTGAIHY 60
           ++KI ALKVRQQ ALTRCTF+KLVNTRF NQLQKA QTLN+H+FSKVPTLSS VTGAI Y
Sbjct: 168 ITKINALKVRQQVALTRCTFLKLVNTRFINQLQKALQTLNYHLFSKVPTLSSMVTGAIQY 227

Query: 61  FQRVYEEAKKYHHELQRLIKQEMERNEYAAHLANPELIFFLASALAIFPIFGAWMFLSSW 120
           FQ VYEEAKKYHHELQRLIKQEMER +YAA+L N E+IFFLASA+  FPIFGAWMFLSSW
Sbjct: 228 FQGVYEEAKKYHHELQRLIKQEMERRDYAAYLVNREVIFFLASAIVTFPIFGAWMFLSSW 287

Query: 121 FS 123
           FS
Sbjct: 288 FS 289

BLAST of CsGy1G012390 vs. NCBI nr
Match: XP_023542864.1 (uncharacterized protein LOC111802657 [Cucurbita pepo subsp. pepo] >XP_023542865.1 uncharacterized protein LOC111802657 [Cucurbita pepo subsp. pepo] >XP_023542866.1 uncharacterized protein LOC111802657 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 197.6 bits (501), Expect = 2.5e-47
Identity = 101/122 (82.79%), Postives = 110/122 (90.16%), Query Frame = 0

Query: 1   MSKIQALKVRQQFALTRCTFVKLVNTRFANQLQKAFQTLNHHVFSKVPTLSSRVTGAIHY 60
           ++KI ALKVRQQ ALTRCTF+KLVNTRF NQLQKA QTLN+H+FSKVPTLSS VTGAI Y
Sbjct: 168 ITKINALKVRQQVALTRCTFLKLVNTRFINQLQKALQTLNYHLFSKVPTLSSMVTGAIQY 227

Query: 61  FQRVYEEAKKYHHELQRLIKQEMERNEYAAHLANPELIFFLASALAIFPIFGAWMFLSSW 120
           FQ VYEEAKKYHHELQRLIKQEMER +YAA+L N E+IFFLASA+  FPIFGAWMFLSSW
Sbjct: 228 FQGVYEEAKKYHHELQRLIKQEMERRDYAAYLVNREVIFFLASAIVTFPIFGAWMFLSSW 287

Query: 121 FS 123
           FS
Sbjct: 288 FS 289

BLAST of CsGy1G012390 vs. TAIR10
Match: AT1G28410.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 79.7 bits (195), Expect = 1.4e-15
Identity = 47/120 (39.17%), Postives = 70/120 (58.33%), Query Frame = 0

Query: 1   MSKIQALKVRQQFALTRCTFVKLVNTRFANQLQKAFQTLN-HHVFSKVPTLSSRVTGAIH 60
           + +++    R+    +RC FVKL++      L K  +  + H    KV ++   +T A+ 
Sbjct: 158 LEQMREFNNRRHHTPSRCPFVKLMSDIQRKHLPKVDEAFDIHWKGKKVLSVQPYLTKALS 217

Query: 61  YFQRVYEEAKKYHHELQRLIKQEMERNEYAAHLANPELIFFLASALAIFPIFGAWMFLSS 120
             + ++    KYHH+LQ  I+ EMER E  A LAN E++FF+ASAL  FP+FGAWM LSS
Sbjct: 218 QLKSLWAAVTKYHHQLQGFIEHEMERTEITAALANREVVFFMASALITFPVFGAWMLLSS 277

BLAST of CsGy1G012390 vs. TAIR10
Match: AT4G31340.1 (myosin heavy chain-related)

HSP 1 Score: 40.4 bits (93), Expect = 9.1e-04
Identity = 22/56 (39.29%), Postives = 36/56 (64.29%), Query Frame = 0

Query: 66  EEAKKYHHELQRLIKQEMERNEYAAHLANPELIFFLASALAIFPIFGAWMFLSSWF 122
           E A  YH+++Q  ++++++ +E     A  E ++F ASAL +FPIF A+  LSS F
Sbjct: 356 ESATTYHNQVQAHVERKLKSHELTEPFATNEFVWFAASALLVFPIFVAYRVLSSLF 411

BLAST of CsGy1G012390 vs. TrEMBL
Match: tr|A0A0A0LSE6|A0A0A0LSE6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G075570 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.1e-59
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0

Query: 1   MSKIQALKVRQQFALTRCTFVKLVNTRFANQLQKAFQTLNHHVFSKVPTLSSRVTGAIHY 60
           MSKIQALKVRQQFALTRCTFVKLVNTRFANQLQKAFQTLNHHVFSKVPTLSSRVTGAIHY
Sbjct: 169 MSKIQALKVRQQFALTRCTFVKLVNTRFANQLQKAFQTLNHHVFSKVPTLSSRVTGAIHY 228

Query: 61  FQRVYEEAKKYHHELQRLIKQEMERNEYAAHLANPELIFFLASALAIFPIFGAWMFLSSW 120
           FQRVYEEAKKYHHELQRLIKQEMERNEYAAHLANPELIFFLASALAIFPIFGAWMFLSSW
Sbjct: 229 FQRVYEEAKKYHHELQRLIKQEMERNEYAAHLANPELIFFLASALAIFPIFGAWMFLSSW 288

Query: 121 FS 123
           FS
Sbjct: 289 FS 290

BLAST of CsGy1G012390 vs. TrEMBL
Match: tr|A0A1S3CPP0|A0A1S3CPP0_CUCME (uncharacterized protein LOC103503257 OS=Cucumis melo OX=3656 GN=LOC103503257 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.8e-54
Identity = 112/119 (94.12%), Postives = 114/119 (95.80%), Query Frame = 0

Query: 4   IQALKVRQQFALTRCTFVKLVNTRFANQLQKAFQTLNHHVFSKVPTLSSRVTGAIHYFQR 63
           IQALKVRQQ ALTRCTFVKLVNTRF NQLQ+AFQTLNHH+F KVPTLSSRVTGAIHYFQR
Sbjct: 1   IQALKVRQQVALTRCTFVKLVNTRFVNQLQQAFQTLNHHLFQKVPTLSSRVTGAIHYFQR 60

Query: 64  VYEEAKKYHHELQRLIKQEMERNEYAAHLANPELIFFLASALAIFPIFGAWMFLSSWFS 123
           VYEEAKKYHHELQRLIKQEMERNEYAAHLANPE IFFLASALA FPIFGAWMFLSSWFS
Sbjct: 61  VYEEAKKYHHELQRLIKQEMERNEYAAHLANPEFIFFLASALATFPIFGAWMFLSSWFS 119

BLAST of CsGy1G012390 vs. TrEMBL
Match: tr|A0A2P4LRY7|A0A2P4LRY7_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_17768 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.6e-26
Identity = 66/122 (54.10%), Postives = 87/122 (71.31%), Query Frame = 0

Query: 1   MSKIQALKVRQQFALTRCTFVKLVNTRFANQLQKAFQTLNHHVFSKVPTLSSRVTGAIHY 60
           +++++AL+ R+Q   TRCTF+K VN RF N  Q  F  L+ + F K  +L+S ++ A+H 
Sbjct: 177 IAEMRALRARRQVGYTRCTFLKFVNNRFGNHPQNLFSMLDPYAFGKGSSLNSYISQALHQ 236

Query: 61  FQRVYEEAKKYHHELQRLIKQEMERNEYAAHLANPELIFFLASALAIFPIFGAWMFLSSW 120
            +R +  AKKYHH+LQ  IKQEMERNE+ A  AN EL+FFLASAL  FPI GAW+FLSS 
Sbjct: 237 LKRGFIVAKKYHHQLQGFIKQEMERNEFTAAYANSELVFFLASALITFPIMGAWVFLSSQ 296

Query: 121 FS 123
           FS
Sbjct: 297 FS 298

BLAST of CsGy1G012390 vs. TrEMBL
Match: tr|D7TJD6|D7TJD6_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_10s0003g00240 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 4.3e-24
Identity = 61/121 (50.41%), Postives = 86/121 (71.07%), Query Frame = 0

Query: 1   MSKIQALKVRQQFALTRCTFVKLVNTRFANQLQKAFQTLNHHVFSKVPTLSSRVTGAIHY 60
           M++++ALK ++Q ++ RCTF+K +N  F N L+K F  L+ ++F +  TLSS  +  +H 
Sbjct: 126 MAELRALKAKRQVSMMRCTFLKFINNLFGNHLEKVFGMLDPYLFGRGSTLSSYKSRFLHQ 185

Query: 61  FQRVYEEAKKYHHELQRLIKQEMERNEYAAHLANPELIFFLASALAIFPIFGAWMFLSSW 120
            +R++  AK YHHELQ  IKQEME+ E+ A LAN EL+FF+ASAL  FPI GAWM +SS 
Sbjct: 186 LKRMWSAAKAYHHELQGFIKQEMEKYEFTAALANDELVFFVASALITFPIMGAWMLVSSQ 245

Query: 121 F 122
           F
Sbjct: 246 F 246

BLAST of CsGy1G012390 vs. TrEMBL
Match: tr|A5AJH7|A5AJH7_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_005069 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 6.9e-22
Identity = 56/115 (48.70%), Postives = 81/115 (70.43%), Query Frame = 0

Query: 1   MSKIQALKVRQQFALTRCTFVKLVNTRFANQLQKAFQTLNHHVFSKVPTLSSRVTGAIHY 60
           M++++ALK ++Q ++ RCTF+K +N  F N L+K F  L+ ++F +  TLSS  +  +H 
Sbjct: 174 MAELRALKAKRQVSMMRCTFLKFINNLFGNHLEKVFGMLDPYLFGRGSTLSSYKSRFLHQ 233

Query: 61  FQRVYEEAKKYHHELQRLIKQEMERNEYAAHLANPELIFFLASALAIFPIFGAWM 116
            +R++  AK YHHELQ  IKQE E+ E+ A LAN EL+FF+ASAL  FPI GAW+
Sbjct: 234 LKRMWSAAKAYHHELQGFIKQEXEKYEFTAALANDELVFFVASALITFPIMGAWI 288

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004146617.11.6e-59100.00PREDICTED: uncharacterized protein LOC101213056 isoform X1 [Cucumis sativus] >KG... [more]
XP_011653316.11.6e-59100.00PREDICTED: uncharacterized protein LOC101213056 isoform X2 [Cucumis sativus][more]
XP_008465616.12.7e-5494.12PREDICTED: uncharacterized protein LOC103503257, partial [Cucumis melo][more]
XP_022955165.12.5e-4782.79uncharacterized protein LOC111457212 [Cucurbita moschata] >XP_022955166.1 unchar... [more]
XP_023542864.12.5e-4782.79uncharacterized protein LOC111802657 [Cucurbita pepo subsp. pepo] >XP_023542865.... [more]
Match NameE-valueIdentityDescription
AT1G28410.11.4e-1539.17FUNCTIONS IN: molecular_function unknown[more]
AT4G31340.19.1e-0439.29myosin heavy chain-related[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LSE6|A0A0A0LSE6_CUCSA1.1e-59100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G075570 PE=4 SV=1[more]
tr|A0A1S3CPP0|A0A1S3CPP0_CUCME1.8e-5494.12uncharacterized protein LOC103503257 OS=Cucumis melo OX=3656 GN=LOC103503257 PE=... [more]
tr|A0A2P4LRY7|A0A2P4LRY7_QUESU4.6e-2654.10Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_17768 PE=4 SV=1[more]
tr|D7TJD6|D7TJD6_VITVI4.3e-2450.41Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_10s0003g00240 PE=4 SV=... [more]
tr|A5AJH7|A5AJH7_VITVI6.9e-2248.70Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_005069 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G012390.1CsGy1G012390.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 65..85
NoneNo IPR availablePANTHERPTHR34360FAMILY NOT NAMEDcoord: 1..122
NoneNo IPR availablePANTHERPTHR34360:SF2SUBFAMILY NOT NAMEDcoord: 1..122

The following gene(s) are paralogous to this gene:

None