CsGy1G010840 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G010840
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionnuclear transport factor 2
LocationChr1 : 6829987 .. 6831030 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTTGCTCACTCTCTCAAATGACTCCCCTTTACGCTTCTTCCTCTTCACTACTCAACCACATACCCCAACGCCATATCAGTAATTACAAATCTCTCTTCCTACATGCACTTCACATTATAAACAATAAACCAACATTATTATTGTATAATCACTAGCTAGTAGAAGCAAAAGGGTTTGTATTGTTGGTTTTGTTAAAGAGAATTAGAGGGAATGGAAGAAGAGGGTGATATAATTGGGAAAGCTTTTGTGGAACATTACTACCAATTGTTTGATAATGAAAGAGCTTCTCTTTCATCTCTGTATCAGCCTGACTCGATGCTCACTTTTGAAGGGCAACAAATTTTAGGAGTTCATGATATCTCCTCAAAGCTTCAGCAATTGCCATTTGAACGTTGTCGACATGTGGTTAGCACTATAGACACGCAGCCCTCCTCCGTCCACGGCTCCATCCTCATCTTCGTCAGCGGTAGCATTGAGATACCTGAAGAAGAACACCCACTCAGATTCAGTCAGGTTTATGGTTACCCTATCCATTTATACTCTTTAAAACACTTGTTTAACATAATTGTTCTTACTTCATTATAATCACTACCCTTTTTGTAATTACTTGGTTTCTTTTTAAAGAAATAAAATTAATTTTTTTAAAAGAATTCAAATCTTATACTTAATGTGGGTTTGGTTTAACGTTTAAGGTTTAAGTACAAATGTTTTTTTTTTTTAAAAAAAAATCACATTAATTTTCATCTAATAAATTCAAATATATGTTTAAGAAAGGTTTAAATCAATATAAATGATTGAGAAAATAAGCAAATGCGAAAATGAAATAATGATGAGATTAGGCATTAGAAAGTTTGGTTTGGTTTTTATGAGAAATTGAAAATGGTTTGAAATTGGTTGGCAGATGTTTCACTTAGTACCATCACCAGAAGGCAACCTTTTCGTTCAGAATGACATATTTCGTCTCAATTATGGTTAGATGGTTGAGCCCTGAGGGTCCTTTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTGT

mRNA sequence

CTTTTGCTCACTCTCTCAAATGACTCCCCTTTACGCTTCTTCCTCTTCACTACTCAACCACATACCCCAACGCCATATCAGTAATTACAAATCTCTCTTCCTACATGCACTTCACATTATAAACAATAAACCAACATTATTATTGTATAATCACTAGCTAGTAGAAGCAAAAGGGTTTGTATTGTTGGTTTTGTTAAAGAGAATTAGAGGGAATGGAAGAAGAGGGTGATATAATTGGGAAAGCTTTTGTGGAACATTACTACCAATTGTTTGATAATGAAAGAGCTTCTCTTTCATCTCTGTATCAGCCTGACTCGATGCTCACTTTTGAAGGGCAACAAATTTTAGGAGTTCATGATATCTCCTCAAAGCTTCAGCAATTGCCATTTGAACGTTGTCGACATGTGGTTAGCACTATAGACACGCAGCCCTCCTCCGTCCACGGCTCCATCCTCATCTTCGTCAGCGGTAGCATTGAGATACCTGAAGAAGAACACCCACTCAGATTCAGTCAGATGTTTCACTTAGTACCATCACCAGAAGGCAACCTTTTCGTTCAGAATGACATATTTCGTCTCAATTATGGTTAGATGGTTGAGCCCTGAGGGTCCTTTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTGT

Coding sequence (CDS)

ATGGAAGAAGAGGGTGATATAATTGGGAAAGCTTTTGTGGAACATTACTACCAATTGTTTGATAATGAAAGAGCTTCTCTTTCATCTCTGTATCAGCCTGACTCGATGCTCACTTTTGAAGGGCAACAAATTTTAGGAGTTCATGATATCTCCTCAAAGCTTCAGCAATTGCCATTTGAACGTTGTCGACATGTGGTTAGCACTATAGACACGCAGCCCTCCTCCGTCCACGGCTCCATCCTCATCTTCGTCAGCGGTAGCATTGAGATACCTGAAGAAGAACACCCACTCAGATTCAGTCAGATGTTTCACTTAGTACCATCACCAGAAGGCAACCTTTTCGTTCAGAATGACATATTTCGTCTCAATTATGGTTAG

Protein sequence

MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIFRLNYG
Homology
[Close]
BLAST of CsGy1G010840 vs. NCBI nr
Match: XP_004153658.1 (PREDICTED: nuclear transport factor 2 [Cucumis sativus] >KGN64547.1 hypothetical protein Csa_1G064690 [Cucumis sativus])

HSP 1 Score: 256.5 bits (654), Expect = 4.6e-65
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0 

Query: 1   MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFE 60
           MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFE
Sbjct: 1   MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFE 60

Query: 61  RCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIF 120
           RCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIF
Sbjct: 61  RCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIF 120

Query: 121 RLNYG 126
           RLNYG
Sbjct: 121 RLNYG 125

[Close]
BLAST of CsGy1G010840 vs. NCBI nr
Match: XP_008441397.1 (PREDICTED: nuclear transport factor 2 [Cucumis melo])

HSP 1 Score: 241.1 bits (614), Expect = 2.0e-60
Identity = 117/124 (94.35%), Postives = 122/124 (98.39%), Query Frame = 0 

Query: 2   EEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFER 61
           EE+GDIIGKAFVEHYY LFDNERASLSSLYQPDSMLTFEGQQILGV+DIS+KLQQLPFER
Sbjct: 3   EEQGDIIGKAFVEHYYHLFDNERASLSSLYQPDSMLTFEGQQILGVNDISTKLQQLPFER 62

Query: 62  CRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIFR 121
           CRHVVSTIDTQPSSV GSILIFVSGSIEIPEEEHPLR+SQMFHLVPSP+GNLFVQNDIFR
Sbjct: 63  CRHVVSTIDTQPSSVPGSILIFVSGSIEIPEEEHPLRYSQMFHLVPSPQGNLFVQNDIFR 122

Query: 122 LNYG 126
           LNYG
Sbjct: 123 LNYG 126

[Close]
BLAST of CsGy1G010840 vs. NCBI nr
Match: XP_023001318.1 (nuclear transport factor 2B [Cucurbita maxima])

HSP 1 Score: 230.3 bits (586), Expect = 3.5e-57
Identity = 109/125 (87.20%), Postives = 119/125 (95.20%), Query Frame = 0 

Query: 1   MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFE 60
           MEEE DI+GKAFVEHYYQLFDNER SLS+LYQPDSMLTFEGQQILGVHDISS+LQQLPFE
Sbjct: 1   MEEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVHDISSRLQQLPFE 60

Query: 61  RCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIF 120
           RCRHVVST+DTQPS+V GSILIFVSGS+E+PEEEH LRFSQMFHLVP+ +GNL +QNDIF
Sbjct: 61  RCRHVVSTVDTQPSAVPGSILIFVSGSLELPEEEHHLRFSQMFHLVPTAQGNLCIQNDIF 120

Query: 121 RLNYG 126
           RLNYG
Sbjct: 121 RLNYG 125

[Close]
BLAST of CsGy1G010840 vs. NCBI nr
Match: XP_023519037.1 (nuclear transport factor 2B [Cucurbita pepo subsp. pepo])

HSP 1 Score: 226.5 bits (576), Expect = 5.1e-56
Identity = 109/125 (87.20%), Postives = 118/125 (94.40%), Query Frame = 0 

Query: 1   MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFE 60
           MEEE DI+GKAFVEHYYQLFDNER SLS+LYQPDSMLTFEGQQILGV DISS+LQQLPFE
Sbjct: 1   MEEETDIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFE 60

Query: 61  RCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIF 120
           RCRHVVST+DTQPS+V GSILIFVSGS+E+PEEEH LRFSQMFHLVP+ +GNL VQNDIF
Sbjct: 61  RCRHVVSTVDTQPSAVPGSILIFVSGSLELPEEEHHLRFSQMFHLVPTAQGNLCVQNDIF 120

Query: 121 RLNYG 126
           RLNYG
Sbjct: 121 RLNYG 125

[Close]
BLAST of CsGy1G010840 vs. NCBI nr
Match: XP_022933198.1 (nuclear transport factor 2B [Cucurbita moschata])

HSP 1 Score: 226.1 bits (575), Expect = 6.6e-56
Identity = 108/125 (86.40%), Postives = 118/125 (94.40%), Query Frame = 0 

Query: 1   MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFE 60
           MEEE DI+GKAFVEHYYQLFDNER SLS+LYQPDSMLTFEGQQILGV DISS+LQQLPFE
Sbjct: 1   MEEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFE 60

Query: 61  RCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIF 120
           RCRHVVST+DTQPS+V GSILIFVSGS+E+P+EEH LRFSQMFHLVP+ +GNL VQNDIF
Sbjct: 61  RCRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFSQMFHLVPTAQGNLCVQNDIF 120

Query: 121 RLNYG 126
           RLNYG
Sbjct: 121 RLNYG 125

[Close]
BLAST of CsGy1G010840 vs. TAIR10
Match: AT1G11570.2 (NTF2-like)

HSP 1 Score: 168.3 bits (425), Expect = 3.0e-42
Identity = 80/128 (62.50%), Postives = 104/128 (81.25%), Query Frame = 0 

Query: 1   MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFE 60
           +EEE   +  AFV HYY LFDN+R+SLSSLY P S+LTFEGQ I GV +IS+KL+QLPF+
Sbjct: 8   IEEE---VASAFVNHYYHLFDNDRSSLSSLYNPTSLLTFEGQTIYGVDNISNKLKQLPFD 67

Query: 61  RCRHVVSTIDTQPSSVH---GSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQN 120
           +C H++ST+D+QPSS+    G IL+FVSGSI++  E+HPLRFSQ FHL+P  +G+ FVQN
Sbjct: 68  QCHHLISTVDSQPSSMAGGCGGILVFVSGSIQLHGEDHPLRFSQTFHLIPVLQGSFFVQN 127

Query: 121 DIFRLNYG 126
           ++FRLNYG
Sbjct: 128 EMFRLNYG 132

[Close]
BLAST of CsGy1G010840 vs. TAIR10
Match: AT1G27970.2 (nuclear transport factor 2B)

HSP 1 Score: 146.4 bits (368), Expect = 1.2e-35
Identity = 65/115 (56.52%), Postives = 86/115 (74.78%), Query Frame = 0 

Query: 6   DIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHV 65
           D + KAFVEHYY  FD  R  L+ LYQ  SMLTFEGQ+I GV  I +KL  LPF++C+H 
Sbjct: 7   DAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQCKHH 66

Query: 66  VSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIF 121
           +ST+D QPS     +L+FVSG++++  EEH L+FSQMFHL+P+P+G+ +V NDIF
Sbjct: 67  ISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIF 121

[Close]
BLAST of CsGy1G010840 vs. TAIR10
Match: AT1G27310.1 (nuclear transport factor 2A)

HSP 1 Score: 144.4 bits (363), Expect = 4.6e-35
Identity = 68/119 (57.14%), Postives = 89/119 (74.79%), Query Frame = 0 

Query: 6   DIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHV 65
           D + KAFVEHYY  FD  R  L SLYQ  SMLTFEGQ+I G  +I +KL  LPF++C+H 
Sbjct: 4   DAVAKAFVEHYYSTFDANRPGLVSLYQEGSMLTFEGQKIQGSQNIVAKLTGLPFQQCKHN 63

Query: 66  VSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIFRLNY 125
           ++T+D QPS   G +L+FVSG++++  E+H L+FSQMFHL+ S +GN +V NDIFRLNY
Sbjct: 64  ITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLI-SNQGNYYVFNDIFRLNY 121

[Close]
BLAST of CsGy1G010840 vs. TAIR10
Match: AT5G60980.2 (Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain)

HSP 1 Score: 55.5 bits (132), Expect = 2.8e-08
Identity = 36/121 (29.75%), Postives = 57/121 (47.11%), Query Frame = 0 

Query: 6   DIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEG-----QQILGVHDISSKLQQLPFE 65
           +++G+AFVE YY +       +   YQ  S LT          +  +  I+ K+  L +E
Sbjct: 13  EVVGRAFVEQYYHILHQSPGLVHRFYQDSSFLTRPDVTGAVTTVTTMQAINDKILSLKYE 72

Query: 66  RCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIF 122
                + T D Q S   G +++ V+G +    +    +FSQ F L P  +G  FV ND+F
Sbjct: 73  DYTAEIETADAQESHERG-VIVLVTGRL-TGNDNVRKKFSQSFFLAPQDKG-YFVLNDVF 130

[Close]
BLAST of CsGy1G010840 vs. Swiss-Prot
Match: sp|Q9C7F5|NTF2B_ARATH (Nuclear transport factor 2B OS=Arabidopsis thaliana OX=3702 GN=NTF2B PE=1 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 6.1e-37
Identity = 69/119 (57.98%), Postives = 90/119 (75.63%), Query Frame = 0 

Query: 6   DIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHV 65
           D + KAFVEHYY  FD  R  L+ LYQ  SMLTFEGQ+I GV  I +KL  LPF++C+H 
Sbjct: 7   DAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQCKHH 66

Query: 66  VSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIFRLNY 125
           +ST+D QPS     +L+FVSG++++  EEH L+FSQMFHL+P+P+G+ +V NDIFRLNY
Sbjct: 67  ISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIFRLNY 125

[Close]
BLAST of CsGy1G010840 vs. Swiss-Prot
Match: sp|Q9XJ54|NTF2_ORYSJ (Nuclear transport factor 2 OS=Oryza sativa subsp. japonica OX=39947 GN=NTF2 PE=2 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 5.2e-36
Identity = 71/122 (58.20%), Postives = 89/122 (72.95%), Query Frame = 0 

Query: 4   EGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCR 63
           + D + KAFVEHYY+ FD  R +L SLYQ  SMLTFEGQQ LG   I+ KL  LPF +C 
Sbjct: 2   DADAVAKAFVEHYYRTFDTNRPALVSLYQDGSMLTFEGQQFLGAAAIAGKLGSLPFAQCH 61

Query: 64  HVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIFRLN 123
           H ++T+D QPS   G +L+FVSGS+    +EHPL+FSQMF L+P+  GN +VQND+FRLN
Sbjct: 62  HDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPA-GGNFYVQNDMFRLN 121

Query: 124 YG 126
           YG
Sbjct: 122 YG 122

[Close]
BLAST of CsGy1G010840 vs. Swiss-Prot
Match: sp|Q9FZK4|NTF2A_ARATH (Nuclear transport factor 2A OS=Arabidopsis thaliana OX=3702 GN=NTF2A PE=1 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 8.3e-34
Identity = 68/119 (57.14%), Postives = 89/119 (74.79%), Query Frame = 0 

Query: 6   DIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHV 65
           D + KAFVEHYY  FD  R  L SLYQ  SMLTFEGQ+I G  +I +KL  LPF++C+H 
Sbjct: 4   DAVAKAFVEHYYSTFDANRPGLVSLYQEGSMLTFEGQKIQGSQNIVAKLTGLPFQQCKHN 63

Query: 66  VSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIFRLNY 125
           ++T+D QPS   G +L+FVSG++++  E+H L+FSQMFHL+ S +GN +V NDIFRLNY
Sbjct: 64  ITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLI-SNQGNYYVFNDIFRLNY 121

[Close]
BLAST of CsGy1G010840 vs. Swiss-Prot
Match: sp|Q10100|NTF2_SCHPO (Nuclear transport factor 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ntf2 PE=3 SV=2)

HSP 1 Score: 123.2 bits (308), Expect = 2.0e-27
Identity = 57/114 (50.00%), Postives = 82/114 (71.93%), Query Frame = 0 

Query: 12  FVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDT 71
           F + YYQ FD++R+ LSSLY+ +SML+FEG Q+ G   I  KL  LPF+R +H +ST+D 
Sbjct: 11  FTQFYYQTFDSDRSQLSSLYREESMLSFEGAQLQGTKAIVEKLVSLPFQRVQHRISTLDA 70

Query: 72  QPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIFRLNYG 126
           QP+   GS+++ V+G + + EE+   R+SQ+FHLV +  GN +V ND+FRLNYG
Sbjct: 71  QPTGTTGSVIVMVTGELLLDEEQMAQRYSQVFHLV-NNNGNYYVLNDLFRLNYG 123

[Close]
BLAST of CsGy1G010840 vs. Swiss-Prot
Match: sp|Q96VN3|NTF2_EMENI (Nuclear transport factor 2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=ntf2 PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 3.4e-27
Identity = 58/117 (49.57%), Postives = 78/117 (66.67%), Query Frame = 0 

Query: 8   IGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVS 67
           I + FV  YYQ FD  RA L+ LY+  SMLTFE   I GV  I  KL  LPF++ +H VS
Sbjct: 7   IAQQFVTFYYQTFDGNRAGLAPLYRDHSMLTFETSAIQGVAGIIEKLTSLPFQKVQHQVS 66

Query: 68  TIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIFRLNY 125
           T+D QPS  HG IL+ V+G++ + EE++P+ ++Q F L+P   G+ FV ND+FRL Y
Sbjct: 67  TLDAQPSGEHGGILVLVTGALLVDEEKNPMNYTQTFQLMPDGAGSYFVLNDVFRLIY 123

[Close]
BLAST of CsGy1G010840 vs. TrEMBL
Match: tr|A0A0A0LUU9|A0A0A0LUU9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G064690 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 3.0e-65
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0 

Query: 1   MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFE 60
           MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFE
Sbjct: 1   MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFE 60

Query: 61  RCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIF 120
           RCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIF
Sbjct: 61  RCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIF 120

Query: 121 RLNYG 126
           RLNYG
Sbjct: 121 RLNYG 125

[Close]
BLAST of CsGy1G010840 vs. TrEMBL
Match: tr|A0A1S3B3B7|A0A1S3B3B7_CUCME (nuclear transport factor 2 OS=Cucumis melo OX=3656 GN=LOC103485524 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 1.3e-60
Identity = 117/124 (94.35%), Postives = 122/124 (98.39%), Query Frame = 0 

Query: 2   EEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFER 61
           EE+GDIIGKAFVEHYY LFDNERASLSSLYQPDSMLTFEGQQILGV+DIS+KLQQLPFER
Sbjct: 3   EEQGDIIGKAFVEHYYHLFDNERASLSSLYQPDSMLTFEGQQILGVNDISTKLQQLPFER 62

Query: 62  CRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIFR 121
           CRHVVSTIDTQPSSV GSILIFVSGSIEIPEEEHPLR+SQMFHLVPSP+GNLFVQNDIFR
Sbjct: 63  CRHVVSTIDTQPSSVPGSILIFVSGSIEIPEEEHPLRYSQMFHLVPSPQGNLFVQNDIFR 122

Query: 122 LNYG 126
           LNYG
Sbjct: 123 LNYG 126

[Close]
BLAST of CsGy1G010840 vs. TrEMBL
Match: tr|A0A2P4GMN7|A0A2P4GMN7_QUESU (Nuclear transport factor 2 OS=Quercus suber OX=58331 GN=CFP56_43028 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.7e-47
Identity = 88/125 (70.40%), Postives = 113/125 (90.40%), Query Frame = 0 

Query: 1   MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFE 60
           MEE+ +++G+AFV+HYY LFDN+RA+LSSLYQP SMLTFEGQ+I+GV DISSKL QLPF+
Sbjct: 1   MEEQVEMVGRAFVDHYYHLFDNDRAALSSLYQPTSMLTFEGQKIVGVDDISSKLHQLPFD 60

Query: 61  RCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIF 120
           + +H++STID+QPSS  G I++FVSGS+++P EEH LRFSQMFHL+P+P+G+ FVQNDIF
Sbjct: 61  QSKHLISTIDSQPSSSSGGIMVFVSGSLQLPGEEHQLRFSQMFHLIPTPQGSFFVQNDIF 120

Query: 121 RLNYG 126
           RLNYG
Sbjct: 121 RLNYG 125

[Close]
BLAST of CsGy1G010840 vs. TrEMBL
Match: tr|M5X1T8|M5X1T8_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G025300 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.2e-47
Identity = 87/125 (69.60%), Postives = 112/125 (89.60%), Query Frame = 0 

Query: 1   MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFE 60
           MEE+ +++G+AFV+HYY LFD ERASLSSLYQP SML+FEGQ+I GV DI+SKL QLPF+
Sbjct: 1   MEEQAEMVGRAFVDHYYHLFDTERASLSSLYQPTSMLSFEGQKIFGVDDITSKLNQLPFD 60

Query: 61  RCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIF 120
           +C+H++STID+QPSS  G I++FVSGS+++P EEH LRFSQMFHL+P+P+G+ F+QNDIF
Sbjct: 61  QCKHLISTIDSQPSSPTGGIVVFVSGSLQLPGEEHHLRFSQMFHLIPTPQGSFFLQNDIF 120

Query: 121 RLNYG 126
           RLNYG
Sbjct: 121 RLNYG 125

[Close]
BLAST of CsGy1G010840 vs. TrEMBL
Match: tr|B9RXQ5|B9RXQ5_RICCO (Nuclear transport factor, putative OS=Ricinus communis OX=3988 GN=RCOM_0905640 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.2e-47
Identity = 90/125 (72.00%), Postives = 108/125 (86.40%), Query Frame = 0 

Query: 1   MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFE 60
           MEE+ + +GKAFV HYY LFDN+R+SL+SLY P SMLTFEGQ+ILGV DISSKL  LPF+
Sbjct: 1   MEEQVETVGKAFVNHYYNLFDNDRSSLASLYHPSSMLTFEGQKILGVDDISSKLNNLPFD 60

Query: 61  RCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIF 120
           +C+H +STIDTQPSS  G I++FVSGS+++  EEHPLRFSQMFHL+PS +G LFVQNDIF
Sbjct: 61  QCKHAISTIDTQPSSFAGGIVVFVSGSLQLAGEEHPLRFSQMFHLIPSVQGGLFVQNDIF 120

Query: 121 RLNYG 126
           RLNYG
Sbjct: 121 RLNYG 125

The following BLAST results are available for this feature:
BLAST of CsGy1G010840 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004153658.14.6e-65100.00PREDICTED: nuclear transport factor 2 [Cucumis sativus] >KGN64547.1 hypothetical... [more]
XP_008441397.12.0e-6094.35PREDICTED: nuclear transport factor 2 [Cucumis melo][more]
XP_023001318.13.5e-5787.20nuclear transport factor 2B [Cucurbita maxima][more]
XP_023519037.15.1e-5687.20nuclear transport factor 2B [Cucurbita pepo subsp. pepo][more]
XP_022933198.16.6e-5686.40nuclear transport factor 2B [Cucurbita moschata][more]
BLAST of CsGy1G010840 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G11570.23.0e-4262.50NTF2-like[more]
AT1G27970.21.2e-3556.52nuclear transport factor 2B[more]
AT1G27310.14.6e-3557.14nuclear transport factor 2A[more]
AT5G60980.22.8e-0829.75Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP m... [more]
BLAST of CsGy1G010840 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9C7F5|NTF2B_ARATH6.1e-3757.98Nuclear transport factor 2B OS=Arabidopsis thaliana OX=3702 GN=NTF2B PE=1 SV=1[more]
sp|Q9XJ54|NTF2_ORYSJ5.2e-3658.20Nuclear transport factor 2 OS=Oryza sativa subsp. japonica OX=39947 GN=NTF2 PE=2... [more]
sp|Q9FZK4|NTF2A_ARATH8.3e-3457.14Nuclear transport factor 2A OS=Arabidopsis thaliana OX=3702 GN=NTF2A PE=1 SV=1[more]
sp|Q10100|NTF2_SCHPO2.0e-2750.00Nuclear transport factor 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843... [more]
sp|Q96VN3|NTF2_EMENI3.4e-2749.57Nuclear transport factor 2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /... [more]
BLAST of CsGy1G010840 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LUU9|A0A0A0LUU9_CUCSA3.0e-65100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G064690 PE=4 SV=1[more]
tr|A0A1S3B3B7|A0A1S3B3B7_CUCME1.3e-6094.35nuclear transport factor 2 OS=Cucumis melo OX=3656 GN=LOC103485524 PE=4 SV=1[more]
tr|A0A2P4GMN7|A0A2P4GMN7_QUESU1.7e-4770.40Nuclear transport factor 2 OS=Quercus suber OX=58331 GN=CFP56_43028 PE=4 SV=1[more]
tr|M5X1T8|M5X1T8_PRUPE2.2e-4769.60Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G025300 PE=4 SV=1[more]
tr|B9RXQ5|B9RXQ5_RICCO2.2e-4772.00Nuclear transport factor, putative OS=Ricinus communis OX=3988 GN=RCOM_0905640 P... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR032710NTF2-like_dom_sf
IPR018222Nuclear_transport_factor_2_euk
IPR002075NTF2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G010840.1CsGy1G010840.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.10.450.50coord: 1..125
e-value: 1.3E-39
score: 137.2
NoneNo IPR availablePANTHERPTHR12612:SF10NUCLEAR TRANSPORT FACTOR 2-LIKE PROTEINcoord: 2..124
NoneNo IPR availablePANTHERPTHR12612NUCLEAR TRANSPORT FACTOR 2coord: 2..124
IPR002075Nuclear transport factor 2PFAMPF02136NTF2coord: 8..122
e-value: 6.5E-33
score: 113.7
IPR018222Nuclear transport factor 2, eukaryotePROSITEPS50177NTF2_DOMAINcoord: 8..122
score: 31.991
IPR018222Nuclear transport factor 2, eukaryoteCDDcd00780NTF2coord: 5..124
e-value: 4.24903E-41
score: 133.562
IPR032710NTF2-like domain superfamilySUPERFAMILYSSF54427NTF2-likecoord: 8..123

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy1G010840Cla019402Watermelon (97103) v1cgybwmB010
CsGy1G010840Csa1G064690Cucumber (Chinese Long) v2cgybcuB001
CsGy1G010840MELO3C002479Melon (DHL92) v3.5.1cgybmeB022
CsGy1G010840ClCG03G004950Watermelon (Charleston Gray)cgybwcgB033
CsGy1G010840CSPI01G10930Wild cucumber (PI 183967)cgybcpiB001
CsGy1G010840CmaCh13G007220Cucurbita maxima (Rimu)cgybcmaB074
CsGy1G010840CmoCh13G007470Cucurbita moschata (Rifu)cgybcmoB068
CsGy1G010840Lsi02G006270Bottle gourd (USVL1VR-Ls)cgyblsiB018
CsGy1G010840Cp4.1LG20g03780Cucurbita pepo (Zucchini)cgybcpeB070
CsGy1G010840MELO3C002479.2Melon (DHL92) v3.6.1cgybmedB020
CsGy1G010840CsaV3_1G011010Cucumber (Chinese Long) v3cgybcucB002
CsGy1G010840Cla97C03G056120Watermelon (97103) v2cgybwmbB032
CsGy1G010840Bhi08G001452Wax gourdcgybwgoB048
CsGy1G010840Carg07530Silver-seed gourdcarcgybB0992
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy1G010840Cucumber (Gy14) v2cgybcgybB035
CsGy1G010840Cucurbita maxima (Rimu)cgybcmaB093
CsGy1G010840Cucurbita maxima (Rimu)cgybcmaB126
CsGy1G010840Cucurbita maxima (Rimu)cgybcmaB142
CsGy1G010840Cucurbita moschata (Rifu)cgybcmoB082
CsGy1G010840Cucurbita moschata (Rifu)cgybcmoB116
CsGy1G010840Cucurbita moschata (Rifu)cgybcmoB133
CsGy1G010840Cucurbita pepo (Zucchini)cgybcpeB018
CsGy1G010840Cucurbita pepo (Zucchini)cgybcpeB023
CsGy1G010840Cucurbita pepo (Zucchini)cgybcpeB067
CsGy1G010840Cucumber (Chinese Long) v2cgybcuB039
CsGy1G010840Bottle gourd (USVL1VR-Ls)cgyblsiB015
CsGy1G010840Melon (DHL92) v3.5.1cgybmeB076
CsGy1G010840Melon (DHL92) v3.6.1cgybmedB072
CsGy1G010840Watermelon (Charleston Gray)cgybwcgB013
CsGy1G010840Watermelon (97103) v1cgybwmB044
CsGy1G010840Wild cucumber (PI 183967)cgybcpiB037
CsGy1G010840Silver-seed gourdcarcgybB0637
CsGy1G010840Silver-seed gourdcarcgybB0788
CsGy1G010840Silver-seed gourdcarcgybB0919
CsGy1G010840Cucumber (Chinese Long) v3cgybcucB045
CsGy1G010840Watermelon (97103) v2cgybwmbB002
CsGy1G010840Wax gourdcgybwgoB020