Cp4.1LG20g03780 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG20g03780
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionNuclear transport factor 2-like protein
LocationCp4.1LG20 : 2150008 .. 2151138 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCTTCTTTTACCATCTCCTTTATTCCTCTGTTTGCGTACAAACACAGCGATTTGGATTATTCCCTATTTTCATCCACCCCACCCAAATGTCTCCTTTACCCACCTTCCCTTTCACTGGCCAAGCAGATCCCAAGGGCATGCCAGTAATTCTCCCCCCTCCTCCATGCACTTGAAAAAAACAGAGCATTATATAATCAGCAGAGAATAAAAGGGTTTTGAGTTACAAGCCCCTGTTTTTGTTGCAGAGTAAGAGATGGAAGAAGAGACTGATATAGTGGGGAAGGCGTTTGTGGAACATTATTACCAATTGTTCGATAATGAAAGACCATCCCTTTCCACTTTGTACCAGCCTGACTCCATGCTCACTTTCGAGGGGCAGCAAATATTAGGCGTTGATGACATCTCCTCCAGGCTTCAGCAGCTGCCATTCGAACGTTGCCGGCATGTCGTCAGCACTGTCGACACGCAGCCCTCCGCCGTCCCTGGCTCCATCCTCATCTTCGTCAGCGGCAGTCTCGAGCTGCCCGAAGAAGAACACCACCTCAGATTCAGCCAGGTTCATGCTTACCCATCAACTTATACTCTTAAAAGTTCAGTTTTTTTATAAGTTTTGAAGTAATATATTGAACGGAAGGATTCAAACACCCAACTTTTGAATCGAAAAGTTGAGCTATGCTAGTAGTTTTTAATGAAATTAAAGAATATTGCTTGCAGATGTTTCACTTGGTACCCACGGCACAGGGCAACCTTTGCGTTCAGAACGACATATTTCGCCTCAATTACGGTTAGTTCATTTCAGGGCTTCATCGAGCCTACATTACCACAAAGAAACGGTGTCGTTTAATGGGATGTAGTTTGTATTCTGCCCTGATCTAAATATATCTCATTCTGTTATGTGTTCTTTATAAAATCTCTATTATTTTTGGGCTTGGGATTTCGGCCCAATAACATCTAGACTATGGGCTTGGTCGGCCCAATTATCGCATCAAACAGGCCCCTAGTCATAAATGGGCTGTTATATTGTTGCGTTGGCGAATGAATATTATTTAGTGTAACTTTATCACGACCGTTCCTTAAAAATTTCGAAGTAAATTCAAATTATTGAATATAAATTTAAGTGGCAAATACT

mRNA sequence

ATTCTTCTTTTACCATCTCCTTTATTCCTCTGTTTGCGTACAAACACAGCGATTTGGATTATTCCCTATTTTCATCCACCCCACCCAAATGTCTCCTTTACCCACCTTCCCTTTCACTGGCCAAGCAGATCCCAAGGGCATGCCAGTAATTCTCCCCCCTCCTCCATGCACTTGAAAAAAACAGAGCATTATATAATCAGCAGAGAATAAAAGGGTTTTGAGTTACAAGCCCCTGTTTTTGTTGCAGAGTAAGAGATGGAAGAAGAGACTGATATAGTGGGGAAGGCGTTTGTGGAACATTATTACCAATTGTTCGATAATGAAAGACCATCCCTTTCCACTTTGTACCAGCCTGACTCCATGCTCACTTTCGAGGGGCAGCAAATATTAGGCGTTGATGACATCTCCTCCAGGCTTCAGCAGCTGCCATTCGAACGTTGCCGGCATGTCGTCAGCACTGTCGACACGCAGCCCTCCGCCGTCCCTGGCTCCATCCTCATCTTCGTCAGCGGCAGTCTCGAGCTGCCCGAAGAAGAACACCACCTCAGATTCAGCCAGATGTTTCACTTGGTACCCACGGCACAGGGCAACCTTTGCGTTCAGAACGACATATTTCGCCTCAATTACGGTTAGTTCATTTCAGGGCTTCATCGAGCCTACATTACCACAAAGAAACGGTGTCGTTTAATGGGATGTAGTTTGTATTCTGCCCTGATCTAAATATATCTCATTCTGTTATGTGTTCTTTATAAAATCTCTATTATTTTTGGGCTTGGGATTTCGGCCCAATAACATCTAGACTATGGGCTTGGTCGGCCCAATTATCGCATCAAACAGGCCCCTAGTCATAAATGGGCTGTTATATTGTTGCGTTGGCGAATGAATATTATTTAGTGTAACTTTATCACGACCGTTCCTTAAAAATTTCGAAGTAAATTCAAATTATTGAATATAAATTTAAGTGGCAAATACT

Coding sequence (CDS)

ATGGAAGAAGAGACTGATATAGTGGGGAAGGCGTTTGTGGAACATTATTACCAATTGTTCGATAATGAAAGACCATCCCTTTCCACTTTGTACCAGCCTGACTCCATGCTCACTTTCGAGGGGCAGCAAATATTAGGCGTTGATGACATCTCCTCCAGGCTTCAGCAGCTGCCATTCGAACGTTGCCGGCATGTCGTCAGCACTGTCGACACGCAGCCCTCCGCCGTCCCTGGCTCCATCCTCATCTTCGTCAGCGGCAGTCTCGAGCTGCCCGAAGAAGAACACCACCTCAGATTCAGCCAGATGTTTCACTTGGTACCCACGGCACAGGGCAACCTTTGCGTTCAGAACGACATATTTCGCCTCAATTACGGTTAG

Protein sequence

MEEETDIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELPEEEHHLRFSQMFHLVPTAQGNLCVQNDIFRLNYG
Homology
[Close]
BLAST of Cp4.1LG20g03780 vs. Swiss-Prot
Match: NTF2_ARATH (Nuclear transport factor 2 OS=Arabidopsis thaliana GN=NTF2 PE=1 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.0e-36
Identity = 73/121 (60.33%), Postives = 89/121 (73.55%), Query Frame = 1 

Query: 4   ETDIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCR 63
           + D V KAFVEHYY  FD  R  L+ LYQ  SMLTFEGQ+I GV  I ++L  LPF++C+
Sbjct: 5   DPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQCK 64

Query: 64  HVVSTVDTQPSAVPGSILIFVSGSLELPEEEHHLRFSQMFHLVPTAQGNLCVQNDIFRLN 123
           H +STVD QPS     +L+FVSG+L+L  EEH L+FSQMFHL+PT QG+  V NDIFRLN
Sbjct: 65  HHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIFRLN 124

Query: 124 Y 125
           Y
Sbjct: 125 Y 125

[Close]
BLAST of Cp4.1LG20g03780 vs. Swiss-Prot
Match: NTF2_ORYSJ (Nuclear transport factor 2 OS=Oryza sativa subsp. japonica GN=NTF2 PE=2 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 8.7e-36
Identity = 73/122 (59.84%), Postives = 88/122 (72.13%), Query Frame = 1 

Query: 4   ETDIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCR 63
           + D V KAFVEHYY+ FD  RP+L +LYQ  SMLTFEGQQ LG   I+ +L  LPF +C 
Sbjct: 2   DADAVAKAFVEHYYRTFDTNRPALVSLYQDGSMLTFEGQQFLGAAAIAGKLGSLPFAQCH 61

Query: 64  HVVSTVDTQPSAVPGSILIFVSGSLELPEEEHHLRFSQMFHLVPTAQGNLCVQNDIFRLN 123
           H ++TVD QPS   G +L+FVSGSL    +EH L+FSQMF L+P A GN  VQND+FRLN
Sbjct: 62  HDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLP-AGGNFYVQNDMFRLN 121

Query: 124 YG 126
           YG
Sbjct: 122 YG 122

[Close]
BLAST of Cp4.1LG20g03780 vs. Swiss-Prot
Match: NTF2_SCHPO (Nuclear transport factor 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ntf2 PE=3 SV=2)

HSP 1 Score: 120.2 bits (300), Expect = 1.6e-26
Identity = 57/114 (50.00%), Postives = 79/114 (69.30%), Query Frame = 1 

Query: 12  FVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDT 71
           F + YYQ FD++R  LS+LY+ +SML+FEG Q+ G   I  +L  LPF+R +H +ST+D 
Sbjct: 11  FTQFYYQTFDSDRSQLSSLYREESMLSFEGAQLQGTKAIVEKLVSLPFQRVQHRISTLDA 70

Query: 72  QPSAVPGSILIFVSGSLELPEEEHHLRFSQMFHLVPTAQGNLCVQNDIFRLNYG 126
           QP+   GS+++ V+G L L EE+   R+SQ+FHLV    GN  V ND+FRLNYG
Sbjct: 71  QPTGTTGSVIVMVTGELLLDEEQMAQRYSQVFHLV-NNNGNYYVLNDLFRLNYG 123

[Close]
BLAST of Cp4.1LG20g03780 vs. Swiss-Prot
Match: NTF2_CANAX (Nuclear transport factor 2 OS=Candida albicans GN=NTF2 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 5.3e-25
Identity = 56/124 (45.16%), Postives = 79/124 (63.71%), Query Frame = 1 

Query: 1   MEEETDIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFE 60
           M  + + V   F   YY  FD++R  L  LY+ +SMLTFE  Q+ G  DI  +L  LPF+
Sbjct: 1   MSVDFNAVATEFCNFYYNQFDSDRSQLGNLYRNESMLTFETSQLQGARDIVEKLASLPFQ 60

Query: 61  RCRHVVSTVDTQPSAVPGSILIFVSGSLELPEEEHHLRFSQMFHLVPTAQGNLCVQNDIF 120
           +  H +ST+D QP++  G IL+ V+G L + EE++  R+SQ+FHL+P   G+  V NDIF
Sbjct: 61  KVAHRISTLDAQPASANGDILVMVTGELLIDEEQNAQRYSQVFHLIPD-NGSYYVFNDIF 120

Query: 121 RLNY 125
           RLNY
Sbjct: 121 RLNY 123

[Close]
BLAST of Cp4.1LG20g03780 vs. Swiss-Prot
Match: NTF2_DEBHA (Nuclear transport factor 2 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=NTF2 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.6e-24
Identity = 55/124 (44.35%), Postives = 77/124 (62.10%), Query Frame = 1 

Query: 1   MEEETDIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFE 60
           M  + + V   F   YYQ FD++R  L  LY+  SMLTFE  Q+ G  DI  +L  LPF+
Sbjct: 1   MSVDFNTVASEFCNFYYQQFDSDRTQLGNLYREQSMLTFETSQLQGAKDIVEKLVSLPFQ 60

Query: 61  RCRHVVSTVDTQPSAVPGSILIFVSGSLELPEEEHHLRFSQMFHLVPTAQGNLCVQNDIF 120
           +  H +ST+D QP +  G IL+ V+G L + +E++  R+SQ+FHL+P    +  V NDIF
Sbjct: 61  KVAHRISTLDAQPGSPNGDILVMVTGELIIDDEQNAQRYSQVFHLIPDG-NSYYVFNDIF 120

Query: 121 RLNY 125
           RLNY
Sbjct: 121 RLNY 123

[Close]
BLAST of Cp4.1LG20g03780 vs. TrEMBL
Match: A0A0A0LUU9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G064690 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 8.2e-57
Identity = 109/125 (87.20%), Postives = 118/125 (94.40%), Query Frame = 1 

Query: 1   MEEETDIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFE 60
           MEEE DI+GKAFVEHYYQLFDNER SLS+LYQPDSMLTFEGQQILGV DISS+LQQLPFE
Sbjct: 1   MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFE 60

Query: 61  RCRHVVSTVDTQPSAVPGSILIFVSGSLELPEEEHHLRFSQMFHLVPTAQGNLCVQNDIF 120
           RCRHVVST+DTQPS+V GSILIFVSGS+E+PEEEH LRFSQMFHLVP+ +GNL VQNDIF
Sbjct: 61  RCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIF 120

Query: 121 RLNYG 126
           RLNYG
Sbjct: 121 RLNYG 125

[Close]
BLAST of Cp4.1LG20g03780 vs. TrEMBL
Match: A0A061GNE0_THECC (NTF2-like OS=Theobroma cacao GN=TCM_030170 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 8.2e-49
Identity = 89/125 (71.20%), Postives = 110/125 (88.00%), Query Frame = 1 

Query: 1   MEEETDIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFE 60
           MEE+ D+VGKAFV+HYY LFDN+RP+LS+LYQP SMLTFEGQ+I GVDDI+++L QLPF+
Sbjct: 1   MEEQVDLVGKAFVDHYYHLFDNDRPALSSLYQPTSMLTFEGQKIQGVDDIAAKLNQLPFD 60

Query: 61  RCRHVVSTVDTQPSAVPGSILIFVSGSLELPEEEHHLRFSQMFHLVPTAQGNLCVQNDIF 120
           +CRH +ST+D+QP +  G I++FVSGSL+LP EEHHLRFSQMFHL+P  QG+  VQNDIF
Sbjct: 61  QCRHEISTIDSQPCSFTGGIVVFVSGSLQLPGEEHHLRFSQMFHLIPMLQGSFFVQNDIF 120

Query: 121 RLNYG 126
           RLNYG
Sbjct: 121 RLNYG 125

[Close]
BLAST of Cp4.1LG20g03780 vs. TrEMBL
Match: M5X1T8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb011119mg PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 6.9e-48
Identity = 87/125 (69.60%), Postives = 111/125 (88.80%), Query Frame = 1 

Query: 1   MEEETDIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFE 60
           MEE+ ++VG+AFV+HYY LFD ER SLS+LYQP SML+FEGQ+I GVDDI+S+L QLPF+
Sbjct: 1   MEEQAEMVGRAFVDHYYHLFDTERASLSSLYQPTSMLSFEGQKIFGVDDITSKLNQLPFD 60

Query: 61  RCRHVVSTVDTQPSAVPGSILIFVSGSLELPEEEHHLRFSQMFHLVPTAQGNLCVQNDIF 120
           +C+H++ST+D+QPS+  G I++FVSGSL+LP EEHHLRFSQMFHL+PT QG+  +QNDIF
Sbjct: 61  QCKHLISTIDSQPSSPTGGIVVFVSGSLQLPGEEHHLRFSQMFHLIPTPQGSFFLQNDIF 120

Query: 121 RLNYG 126
           RLNYG
Sbjct: 121 RLNYG 125

[Close]
BLAST of Cp4.1LG20g03780 vs. TrEMBL
Match: B9RXQ5_RICCO (Nuclear transport factor, putative OS=Ricinus communis GN=RCOM_0905640 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.0e-46
Identity = 88/125 (70.40%), Postives = 106/125 (84.80%), Query Frame = 1 

Query: 1   MEEETDIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFE 60
           MEE+ + VGKAFV HYY LFDN+R SL++LY P SMLTFEGQ+ILGVDDISS+L  LPF+
Sbjct: 1   MEEQVETVGKAFVNHYYNLFDNDRSSLASLYHPSSMLTFEGQKILGVDDISSKLNNLPFD 60

Query: 61  RCRHVVSTVDTQPSAVPGSILIFVSGSLELPEEEHHLRFSQMFHLVPTAQGNLCVQNDIF 120
           +C+H +ST+DTQPS+  G I++FVSGSL+L  EEH LRFSQMFHL+P+ QG L VQNDIF
Sbjct: 61  QCKHAISTIDTQPSSFAGGIVVFVSGSLQLAGEEHPLRFSQMFHLIPSVQGGLFVQNDIF 120

Query: 121 RLNYG 126
           RLNYG
Sbjct: 121 RLNYG 125

[Close]
BLAST of Cp4.1LG20g03780 vs. TrEMBL
Match: V4UJ39_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016912mg PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.3e-46
Identity = 86/125 (68.80%), Postives = 107/125 (85.60%), Query Frame = 1 

Query: 1   MEEETDIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFE 60
           ME++T++VGK FV HYY LFDN+R SLS+LYQP SMLTFEGQ+I GVDDIS++  QLPF+
Sbjct: 53  MEDQTELVGKTFVGHYYHLFDNDRASLSSLYQPTSMLTFEGQKIFGVDDISTKFNQLPFD 112

Query: 61  RCRHVVSTVDTQPSAVPGSILIFVSGSLELPEEEHHLRFSQMFHLVPTAQGNLCVQNDIF 120
           +CRH++ST+D+QP    G +LIFVSGSL+L  E+HHLRFSQMFHL+PT +G+  VQNDIF
Sbjct: 113 QCRHMISTIDSQPCPSTGGLLIFVSGSLQLAGEDHHLRFSQMFHLIPTPRGSFAVQNDIF 172

Query: 121 RLNYG 126
           RLNYG
Sbjct: 173 RLNYG 177

[Close]
BLAST of Cp4.1LG20g03780 vs. TAIR10
Match: AT1G11570.2 (AT1G11570.2 NTF2-like)

HSP 1 Score: 165.6 bits (418), Expect = 1.9e-41
Identity = 79/128 (61.72%), Postives = 102/128 (79.69%), Query Frame = 1 

Query: 1   MEEETDIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFE 60
           +EEE   V  AFV HYY LFDN+R SLS+LY P S+LTFEGQ I GVD+IS++L+QLPF+
Sbjct: 8   IEEE---VASAFVNHYYHLFDNDRSSLSSLYNPTSLLTFEGQTIYGVDNISNKLKQLPFD 67

Query: 61  RCRHVVSTVDTQPSAVP---GSILIFVSGSLELPEEEHHLRFSQMFHLVPTAQGNLCVQN 120
           +C H++STVD+QPS++    G IL+FVSGS++L  E+H LRFSQ FHL+P  QG+  VQN
Sbjct: 68  QCHHLISTVDSQPSSMAGGCGGILVFVSGSIQLHGEDHPLRFSQTFHLIPVLQGSFFVQN 127

Query: 121 DIFRLNYG 126
           ++FRLNYG
Sbjct: 128 EMFRLNYG 132

[Close]
BLAST of Cp4.1LG20g03780 vs. TAIR10
Match: AT1G27310.1 (AT1G27310.1 nuclear transport factor 2A)

HSP 1 Score: 147.1 bits (370), Expect = 7.1e-36
Identity = 71/121 (58.68%), Postives = 90/121 (74.38%), Query Frame = 1 

Query: 4   ETDIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCR 63
           + D V KAFVEHYY  FD  RP L +LYQ  SMLTFEGQ+I G  +I ++L  LPF++C+
Sbjct: 2   DPDAVAKAFVEHYYSTFDANRPGLVSLYQEGSMLTFEGQKIQGSQNIVAKLTGLPFQQCK 61

Query: 64  HVVSTVDTQPSAVPGSILIFVSGSLELPEEEHHLRFSQMFHLVPTAQGNLCVQNDIFRLN 123
           H ++TVD QPS   G +L+FVSG+L+L  E+H L+FSQMFHL+ + QGN  V NDIFRLN
Sbjct: 62  HNITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLI-SNQGNYYVFNDIFRLN 121

Query: 124 Y 125
           Y
Sbjct: 122 Y 121

[Close]
BLAST of Cp4.1LG20g03780 vs. TAIR10
Match: AT1G27970.2 (AT1G27970.2 nuclear transport factor 2B)

HSP 1 Score: 145.2 bits (365), Expect = 2.7e-35
Identity = 69/117 (58.97%), Postives = 85/117 (72.65%), Query Frame = 1 

Query: 4   ETDIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCR 63
           + D V KAFVEHYY  FD  R  L+ LYQ  SMLTFEGQ+I GV  I ++L  LPF++C+
Sbjct: 5   DPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQCK 64

Query: 64  HVVSTVDTQPSAVPGSILIFVSGSLELPEEEHHLRFSQMFHLVPTAQGNLCVQNDIF 121
           H +STVD QPS     +L+FVSG+L+L  EEH L+FSQMFHL+PT QG+  V NDIF
Sbjct: 65  HHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIF 121

[Close]
BLAST of Cp4.1LG20g03780 vs. NCBI nr
Match: gi|449472651|ref|XP_004153658.1| (PREDICTED: nuclear transport factor 2 [Cucumis sativus])

HSP 1 Score: 227.6 bits (579), Expect = 1.2e-56
Identity = 109/125 (87.20%), Postives = 118/125 (94.40%), Query Frame = 1 

Query: 1   MEEETDIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFE 60
           MEEE DI+GKAFVEHYYQLFDNER SLS+LYQPDSMLTFEGQQILGV DISS+LQQLPFE
Sbjct: 1   MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFE 60

Query: 61  RCRHVVSTVDTQPSAVPGSILIFVSGSLELPEEEHHLRFSQMFHLVPTAQGNLCVQNDIF 120
           RCRHVVST+DTQPS+V GSILIFVSGS+E+PEEEH LRFSQMFHLVP+ +GNL VQNDIF
Sbjct: 61  RCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIF 120

Query: 121 RLNYG 126
           RLNYG
Sbjct: 121 RLNYG 125

[Close]
BLAST of Cp4.1LG20g03780 vs. NCBI nr
Match: gi|659067809|ref|XP_008441397.1| (PREDICTED: nuclear transport factor 2 [Cucumis melo])

HSP 1 Score: 225.7 bits (574), Expect = 4.5e-56
Identity = 106/124 (85.48%), Postives = 118/124 (95.16%), Query Frame = 1 

Query: 2   EEETDIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFER 61
           EE+ DI+GKAFVEHYY LFDNER SLS+LYQPDSMLTFEGQQILGV+DIS++LQQLPFER
Sbjct: 3   EEQGDIIGKAFVEHYYHLFDNERASLSSLYQPDSMLTFEGQQILGVNDISTKLQQLPFER 62

Query: 62  CRHVVSTVDTQPSAVPGSILIFVSGSLELPEEEHHLRFSQMFHLVPTAQGNLCVQNDIFR 121
           CRHVVST+DTQPS+VPGSILIFVSGS+E+PEEEH LR+SQMFHLVP+ QGNL VQNDIFR
Sbjct: 63  CRHVVSTIDTQPSSVPGSILIFVSGSIEIPEEEHPLRYSQMFHLVPSPQGNLFVQNDIFR 122

Query: 122 LNYG 126
           LNYG
Sbjct: 123 LNYG 126

[Close]
BLAST of Cp4.1LG20g03780 vs. NCBI nr
Match: gi|590625845|ref|XP_007025997.1| (NTF2-like [Theobroma cacao])

HSP 1 Score: 201.1 bits (510), Expect = 1.2e-48
Identity = 89/125 (71.20%), Postives = 110/125 (88.00%), Query Frame = 1 

Query: 1   MEEETDIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFE 60
           MEE+ D+VGKAFV+HYY LFDN+RP+LS+LYQP SMLTFEGQ+I GVDDI+++L QLPF+
Sbjct: 1   MEEQVDLVGKAFVDHYYHLFDNDRPALSSLYQPTSMLTFEGQKIQGVDDIAAKLNQLPFD 60

Query: 61  RCRHVVSTVDTQPSAVPGSILIFVSGSLELPEEEHHLRFSQMFHLVPTAQGNLCVQNDIF 120
           +CRH +ST+D+QP +  G I++FVSGSL+LP EEHHLRFSQMFHL+P  QG+  VQNDIF
Sbjct: 61  QCRHEISTIDSQPCSFTGGIVVFVSGSLQLPGEEHHLRFSQMFHLIPMLQGSFFVQNDIF 120

Query: 121 RLNYG 126
           RLNYG
Sbjct: 121 RLNYG 125

[Close]
BLAST of Cp4.1LG20g03780 vs. NCBI nr
Match: gi|645236543|ref|XP_008224788.1| (PREDICTED: nuclear transport factor 2 [Prunus mume])

HSP 1 Score: 198.4 bits (503), Expect = 7.6e-48
Identity = 88/125 (70.40%), Postives = 111/125 (88.80%), Query Frame = 1 

Query: 1   MEEETDIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFE 60
           MEE+ ++VG+AFV+HYY LFD ER SLS+LYQP SML+FEGQ+I GVDDI+S+L QLPF+
Sbjct: 1   MEEQAEMVGRAFVDHYYHLFDTERASLSSLYQPTSMLSFEGQKIFGVDDITSKLNQLPFD 60

Query: 61  RCRHVVSTVDTQPSAVPGSILIFVSGSLELPEEEHHLRFSQMFHLVPTAQGNLCVQNDIF 120
           +C+H++STVD+QPS+  G I++FVSGSL+LP EEHHLRFSQMFHL+PT QG+  +QNDIF
Sbjct: 61  QCKHLISTVDSQPSSPTGGIVVFVSGSLQLPGEEHHLRFSQMFHLIPTPQGSFFLQNDIF 120

Query: 121 RLNYG 126
           RLNYG
Sbjct: 121 RLNYG 125

[Close]
BLAST of Cp4.1LG20g03780 vs. NCBI nr
Match: gi|595909807|ref|XP_007214294.1| (hypothetical protein PRUPE_ppb011119mg [Prunus persica])

HSP 1 Score: 198.0 bits (502), Expect = 9.9e-48
Identity = 87/125 (69.60%), Postives = 111/125 (88.80%), Query Frame = 1 

Query: 1   MEEETDIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFE 60
           MEE+ ++VG+AFV+HYY LFD ER SLS+LYQP SML+FEGQ+I GVDDI+S+L QLPF+
Sbjct: 1   MEEQAEMVGRAFVDHYYHLFDTERASLSSLYQPTSMLSFEGQKIFGVDDITSKLNQLPFD 60

Query: 61  RCRHVVSTVDTQPSAVPGSILIFVSGSLELPEEEHHLRFSQMFHLVPTAQGNLCVQNDIF 120
           +C+H++ST+D+QPS+  G I++FVSGSL+LP EEHHLRFSQMFHL+PT QG+  +QNDIF
Sbjct: 61  QCKHLISTIDSQPSSPTGGIVVFVSGSLQLPGEEHHLRFSQMFHLIPTPQGSFFLQNDIF 120

Query: 121 RLNYG 126
           RLNYG
Sbjct: 121 RLNYG 125

The following BLAST results are available for this feature:
BLAST of Cp4.1LG20g03780 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NTF2_ARATH1.0e-3660.33Nuclear transport factor 2 OS=Arabidopsis thaliana GN=NTF2 PE=1 SV=1[more]
NTF2_ORYSJ8.7e-3659.84Nuclear transport factor 2 OS=Oryza sativa subsp. japonica GN=NTF2 PE=2 SV=1[more]
NTF2_SCHPO1.6e-2650.00Nuclear transport factor 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843... [more]
NTF2_CANAX5.3e-2545.16Nuclear transport factor 2 OS=Candida albicans GN=NTF2 PE=3 SV=1[more]
NTF2_DEBHA2.6e-2444.35Nuclear transport factor 2 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767... [more]
BLAST of Cp4.1LG20g03780 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUU9_CUCSA8.2e-5787.20Uncharacterized protein OS=Cucumis sativus GN=Csa_1G064690 PE=4 SV=1[more]
A0A061GNE0_THECC8.2e-4971.20NTF2-like OS=Theobroma cacao GN=TCM_030170 PE=4 SV=1[more]
M5X1T8_PRUPE6.9e-4869.60Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb011119mg PE=4 SV=1[more]
B9RXQ5_RICCO1.0e-4670.40Nuclear transport factor, putative OS=Ricinus communis GN=RCOM_0905640 PE=4 SV=1[more]
V4UJ39_9ROSI1.3e-4668.80Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016912mg PE=4 SV=1[more]
BLAST of Cp4.1LG20g03780 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G11570.21.9e-4161.72 NTF2-like[more]
AT1G27310.17.1e-3658.68 nuclear transport factor 2A[more]
AT1G27970.22.7e-3558.97 nuclear transport factor 2B[more]
BLAST of Cp4.1LG20g03780 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449472651|ref|XP_004153658.1|1.2e-5687.20PREDICTED: nuclear transport factor 2 [Cucumis sativus][more]
gi|659067809|ref|XP_008441397.1|4.5e-5685.48PREDICTED: nuclear transport factor 2 [Cucumis melo][more]
gi|590625845|ref|XP_007025997.1|1.2e-4871.20NTF2-like [Theobroma cacao][more]
gi|645236543|ref|XP_008224788.1|7.6e-4870.40PREDICTED: nuclear transport factor 2 [Prunus mume][more]
gi|595909807|ref|XP_007214294.1|9.9e-4869.60hypothetical protein PRUPE_ppb011119mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR018222Nuclear_transport_factor_2_euk
IPR002075NTF2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
biological_process GO:0008150 biological_process
cellular_component GO:0005622 intracellular
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG20g03780.1Cp4.1LG20g03780.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002075Nuclear transport factor 2PFAMPF02136NTF2coord: 8..122
score: 2.7
IPR018222Nuclear transport factor 2, eukaryotePROFILEPS50177NTF2_DOMAINcoord: 8..122
score: 31
NoneNo IPR availablePANTHERPTHR12612NUCLEAR TRANSPORT FACTOR 2coord: 1..125
score: 6.2
NoneNo IPR availablePANTHERPTHR12612:SF10NUCLEAR TRANSPORT FACTOR 2-LIKE PROTEINcoord: 1..125
score: 6.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG20g03780Cucsa.086050Cucumber (Gy14) v1cgycpeB0159
Cp4.1LG20g03780CmaCh13G007220Cucurbita maxima (Rimu)cmacpeB234
Cp4.1LG20g03780CmoCh13G007470Cucurbita moschata (Rifu)cmocpeB201
Cp4.1LG20g03780Cla019402Watermelon (97103) v1cpewmB503
Cp4.1LG20g03780Csa1G064690Cucumber (Chinese Long) v2cpecuB506
Cp4.1LG20g03780MELO3C002479Melon (DHL92) v3.5.1cpemeB477
Cp4.1LG20g03780ClCG03G004950Watermelon (Charleston Gray)cpewcgB463
Cp4.1LG20g03780CSPI01G10930Wild cucumber (PI 183967)cpecpiB506
Cp4.1LG20g03780Lsi02G006270Bottle gourd (USVL1VR-Ls)cpelsiB417
Cp4.1LG20g03780MELO3C002479.2Melon (DHL92) v3.6.1cpemedB559
Cp4.1LG20g03780CsaV3_1G011010Cucumber (Chinese Long) v3cpecucB0624
Cp4.1LG20g03780Bhi08G001452Wax gourdcpewgoB0655
Cp4.1LG20g03780CsGy1G010840Cucumber (Gy14) v2cgybcpeB070
Cp4.1LG20g03780Carg07530Silver-seed gourdcarcpeB1401
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG20g03780Silver-seed gourdcarcpeB0916
Cp4.1LG20g03780Silver-seed gourdcarcpeB1118
Cp4.1LG20g03780Silver-seed gourdcarcpeB1222
Cp4.1LG20g03780Silver-seed gourdcarcpeB1291
Cp4.1LG20g03780Cucumber (Chinese Long) v3cpecucB0650
Cp4.1LG20g03780Wax gourdcpewgoB0632
Cp4.1LG20g03780Wax gourdcpewgoB0637
Cp4.1LG20g03780Cucurbita pepo (Zucchini)cpecpeB048
Cp4.1LG20g03780Cucurbita pepo (Zucchini)cpecpeB086
Cp4.1LG20g03780Cucurbita pepo (Zucchini)cpecpeB412
Cp4.1LG20g03780Cucurbita pepo (Zucchini)cpecpeB437
Cp4.1LG20g03780Cucurbita pepo (Zucchini)cpecpeB445
Cp4.1LG20g03780Cucumber (Gy14) v1cgycpeB0040
Cp4.1LG20g03780Cucumber (Gy14) v1cgycpeB0394
Cp4.1LG20g03780Cucurbita maxima (Rimu)cmacpeB442
Cp4.1LG20g03780Cucurbita maxima (Rimu)cmacpeB533
Cp4.1LG20g03780Cucurbita maxima (Rimu)cmacpeB677
Cp4.1LG20g03780Cucurbita maxima (Rimu)cmacpeB881
Cp4.1LG20g03780Cucurbita moschata (Rifu)cmocpeB403
Cp4.1LG20g03780Cucurbita moschata (Rifu)cmocpeB443
Cp4.1LG20g03780Cucurbita moschata (Rifu)cmocpeB631
Cp4.1LG20g03780Cucurbita moschata (Rifu)cmocpeB818
Cp4.1LG20g03780Wild cucumber (PI 183967)cpecpiB527
Cp4.1LG20g03780Cucumber (Chinese Long) v2cpecuB525
Cp4.1LG20g03780Cucumber (Chinese Long) v2cpecuB526
Cp4.1LG20g03780Bottle gourd (USVL1VR-Ls)cpelsiB415
Cp4.1LG20g03780Watermelon (Charleston Gray)cpewcgB450
Cp4.1LG20g03780Watermelon (97103) v1cpewmB513
Cp4.1LG20g03780Melon (DHL92) v3.5.1cpemeB485
Cp4.1LG20g03780Melon (DHL92) v3.5.1cpemeB481
Cp4.1LG20g03780Melon (DHL92) v3.6.1cpemedB572