CsGy1G010290 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G010290
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Unknown Protein
Location	Chr1 : 6428412 .. 6428876 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAGCTCAGGGCAGACTTCCCATACCGAAGACGATGATATTTCTTCAGACTCAAATGGAGAAGAAGAACCAACCACTCCTCTAACACCTCAAAGCCCGAATGCTCCTCCGGCTGATGAAGTCGTCGTCGATATAGACGATGGAGAAGGAGATGGAGATCAAGGACATGGAGAAGGAGAAGAAGGAGAAGGAGAAGATGAAGATGAGGAAGAGCAAGAGAACGAGGACGAAGAAGAAGAAAGCAATAGCAATGCCATGCCCCGGTCTTCCATGGAAGGCAATCGGTCCCATACTGGAACCCCAACACCAGATGGCTCACATAATACAACAGATTCAAGCAGTGACGATGGAGTAGAGCCTGAACCCAATCCCAATCCAAATCCACCGGCGGAAAATCAGTCTTCAATTCTGTACAACAGTATGTTCATCCATTCTATACATCTAATCTCTGTTCCTTCATAA

mRNA sequence

ATGGTAAGCTCAGGGCAGACTTCCCATACCGAAGACGATGATATTTCTTCAGACTCAAATGGAGAAGAAGAACCAACCACTCCTCTAACACCTCAAAGCCCGAATGCTCCTCCGGCTGATGAAGTCGTCGTCGATATAGACGATGGAGAAGGAGATGGAGATCAAGGACATGGAGAAGGAGAAGAAGGAGAAGGAGAAGATGAAGATGAGGAAGAGCAAGAGAACGAGGACGAAGAAGAAGAAAGCAATAGCAATGCCATGCCCCGGTCTTCCATGGAAGGCAATCGGTCCCATACTGGAACCCCAACACCAGATGGCTCACATAATACAACAGATTCAAGCAGTGACGATGGAGTAGAGCCTGAACCCAATCCCAATCCAAATCCACCGGCGGAAAATCAGTCTTCAATTCTGTACAACAGTATGTTCATCCATTCTATACATCTAATCTCTGTTCCTTCATAA

Coding sequence (CDS)

ATGGTAAGCTCAGGGCAGACTTCCCATACCGAAGACGATGATATTTCTTCAGACTCAAATGGAGAAGAAGAACCAACCACTCCTCTAACACCTCAAAGCCCGAATGCTCCTCCGGCTGATGAAGTCGTCGTCGATATAGACGATGGAGAAGGAGATGGAGATCAAGGACATGGAGAAGGAGAAGAAGGAGAAGGAGAAGATGAAGATGAGGAAGAGCAAGAGAACGAGGACGAAGAAGAAGAAAGCAATAGCAATGCCATGCCCCGGTCTTCCATGGAAGGCAATCGGTCCCATACTGGAACCCCAACACCAGATGGCTCACATAATACAACAGATTCAAGCAGTGACGATGGAGTAGAGCCTGAACCCAATCCCAATCCAAATCCACCGGCGGAAAATCAGTCTTCAATTCTGTACAACAGTATGTTCATCCATTCTATACATCTAATCTCTGTTCCTTCATAA

Protein sequence

MVSSGQTSHTEDDDISSDSNGEEEPTTPLTPQSPNAPPADEVVVDIDDGEGDGDQGHGEGEEGEGEDEDEEEQENEDEEEESNSNAMPRSSMEGNRSHTGTPTPDGSHNTTDSSSDDGVEPEPNPNPNPPAENQSSILYNSMFIHSIHLISVPS

Homology

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BLAST of CsGy1G010290 vs. NCBI nr
Match: XP_011660365.1 (PREDICTED: nucleolin-like [Cucumis sativus])

HSP 1 Score: 58.2 bits (139), Expect = 2.9e-05
Identity = 152/154 (98.70%), Postives = 152/154 (98.70%), Query Frame = 0


Query: 1   MVSSGQTSHTEDDDISSDSNGEEEPXXXXXXXXXXXXXXDEVVVXXXXXXXXXXXXXXXX 60
           MVSSGQTSHTEDDDISSDSNGEEEPXXXXXXXXXXXXXX EVV XXXXXXXXXXXXXXXX
Sbjct: 1   MVSSGQTSHTEDDDISSDSNGEEEPXXXXXXXXXXXXXXAEVVXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXENQSSILYNSMFIHSIHLISVPS 155
           XXXXXXXXXXXENQSSILYNSMFIHSIHLISVPS
Sbjct: 121 XXXXXXXXXXXENQSSILYNSMFIHSIHLISVPS 154

The following BLAST results are available for this feature:

BLAST of CsGy1G010290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011660365.1	2.9e-05	98.70	PREDICTED: nucleolin-like [Cucumis sativus]	[more]

BLAST of CsGy1G010290 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G010290 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G010290 vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G010290.1	CsGy1G010290.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 61..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..81

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G010290	Csa1G058660	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G010290	CSPI01G10290	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G010290	MELO3C002426.2	Melon (DHL92) v3.6.1	cgybmedB020
CsGy1G010290	CsaV3_1G010340	Cucumber (Chinese Long) v3	cgybcucB002

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G010290	Cucurbita maxima (Rimu)	cgybcmaB063
CsGy1G010290	Cucurbita maxima (Rimu)	cgybcmaB074
CsGy1G010290	Cucurbita maxima (Rimu)	cgybcmaB093
CsGy1G010290	Cucurbita moschata (Rifu)	cgybcmoB058
CsGy1G010290	Cucurbita moschata (Rifu)	cgybcmoB068
CsGy1G010290	Cucurbita moschata (Rifu)	cgybcmoB082
CsGy1G010290	Cucurbita pepo (Zucchini)	cgybcpeB018
CsGy1G010290	Cucurbita pepo (Zucchini)	cgybcpeB070
CsGy1G010290	Cucurbita pepo (Zucchini)	cgybcpeB080
CsGy1G010290	Bottle gourd (USVL1VR-Ls)	cgyblsiB018
CsGy1G010290	Melon (DHL92) v3.5.1	cgybmeB022
CsGy1G010290	Melon (DHL92) v3.5.1	cgybmeB034
CsGy1G010290	Watermelon (Charleston Gray)	cgybwcgB033
CsGy1G010290	Watermelon (97103) v1	cgybwmB010
CsGy1G010290	Silver-seed gourd	carcgybB0500
CsGy1G010290	Silver-seed gourd	carcgybB0992
CsGy1G010290	Silver-seed gourd	carcgybB0989
CsGy1G010290	Watermelon (97103) v2	cgybwmbB032
CsGy1G010290	Wax gourd	cgybwgoB030