CSPI01G10290 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G10290
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 6446462 .. 6446926 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAAGCTCAGGGCAGACTTCCCATACCGAAGACGATGATATTTCTTCAGACTCAAATGGAGAAGAAGAACCAACCACTCCTCTAACACCTCAAAGCCCGAATGCTCCTCCGGCTGCTGAAGTCGTCGTCGATATAGACGATGGAGAAGGAGATGGAGATCAAGGACATGGAGAAGGAGAAGAAGGAGAAGGAGAAGATGAAGATGAGGAAGAGCAAGAGAACGAGGACGAAGAAGAAGAAAGCAATAGCAATGCCATGCCCCGGTCTTCCATGGAAGGCAATCGGTCCCATACTGGAACCCCAACACCAGATGGCTCACATAATACAACAGATTCAAGCAGTGACGATGGAGTAGAGCCTGAACCCAATCCCAATCCAAATCCACCGGCGGAAAATCAGTCTTCAATTCTGTACAACAGTATGTTCATCCATTCTATACATCTAATCTCTGTTCCTTCATAA

mRNA sequence

ATGGTAAGCTCAGGGCAGACTTCCCATACCGAAGACGATGATATTTCTTCAGACTCAAATGGAGAAGAAGAACCAACCACTCCTCTAACACCTCAAAGCCCGAATGCTCCTCCGGCTGCTGAAGTCGTCGTCGATATAGACGATGGAGAAGGAGATGGAGATCAAGGACATGGAGAAGGAGAAGAAGGAGAAGGAGAAGATGAAGATGAGGAAGAGCAAGAGAACGAGGACGAAGAAGAAGAAAGCAATAGCAATGCCATGCCCCGGTCTTCCATGGAAGGCAATCGGTCCCATACTGGAACCCCAACACCAGATGGCTCACATAATACAACAGATTCAAGCAGTGACGATGGAGTAGAGCCTGAACCCAATCCCAATCCAAATCCACCGGCGGAAAATCAGTCTTCAATTCTGTACAACAGTATGTTCATCCATTCTATACATCTAATCTCTGTTCCTTCATAA

Coding sequence (CDS)

ATGGTAAGCTCAGGGCAGACTTCCCATACCGAAGACGATGATATTTCTTCAGACTCAAATGGAGAAGAAGAACCAACCACTCCTCTAACACCTCAAAGCCCGAATGCTCCTCCGGCTGCTGAAGTCGTCGTCGATATAGACGATGGAGAAGGAGATGGAGATCAAGGACATGGAGAAGGAGAAGAAGGAGAAGGAGAAGATGAAGATGAGGAAGAGCAAGAGAACGAGGACGAAGAAGAAGAAAGCAATAGCAATGCCATGCCCCGGTCTTCCATGGAAGGCAATCGGTCCCATACTGGAACCCCAACACCAGATGGCTCACATAATACAACAGATTCAAGCAGTGACGATGGAGTAGAGCCTGAACCCAATCCCAATCCAAATCCACCGGCGGAAAATCAGTCTTCAATTCTGTACAACAGTATGTTCATCCATTCTATACATCTAATCTCTGTTCCTTCATAA
Homology
[Close]
BLAST of CSPI01G10290 vs. TrEMBL
Match: A0A0A0LRU9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058660 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 1.6e-62
Identity = 138/141 (97.87%), Postives = 140/141 (99.29%), Query Frame = 1 

Query: 1   MVSSGQTSHTEDDDISSDSNGEEEPTTPLTPQSPNAPPAAEVVVDIDDGEGDGDQGHGEG 60
           MVSSGQTSHTEDDDISSDSNGEEEPTTPLTPQSPNAPPAAEVVVDIDDGEGDGDQGHGEG
Sbjct: 1   MVSSGQTSHTEDDDISSDSNGEEEPTTPLTPQSPNAPPAAEVVVDIDDGEGDGDQGHGEG 60

Query: 61  EEGEGEDEDEEEQENEDEEEESNSNAMPRSSMEGNRSHTGTPTPDGSHNTTDSSSDDGVE 120
           EEGEGEDEDEEEQENEDEEEESNS+AMPRSSMEGNRSHTGTPTPDGSHNTTDSSSD GVE
Sbjct: 61  EEGEGEDEDEEEQENEDEEEESNSDAMPRSSMEGNRSHTGTPTPDGSHNTTDSSSDGGVE 120

Query: 121 PEPNPNPNPPAENQSSILYNS 142
           PEPNPNPNPPAENQSSILYN+
Sbjct: 121 PEPNPNPNPPAENQSSILYNT 141

[Close]
BLAST of CSPI01G10290 vs. TrEMBL
Match: A0A0A0LWY1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G059180 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 5.2e-29
Identity = 96/143 (67.13%), Postives = 113/143 (79.02%), Query Frame = 1 

Query: 1   MVSSGQTSHTEDDDISSDSNGEEEPTTPLTPQSPNAPPA-AEVVVDIDDGEGDGDQGHGE 60
           M SS QTSH++D+DISS+SNGEEE TT  T Q  NAPPA  + VV+I  G GD  +G  E
Sbjct: 1   MESSVQTSHSKDNDISSESNGEEELTTLPTAQRSNAPPADDQFVVNIRAGVGDA-EGDVE 60

Query: 61  GE-EGEGEDEDEEEQENEDEEEESNSNAMPRSSMEGNRSHTGTPTPDGSHNTTDSSSDDG 120
           G+ EG+GE ED EEQENE+EE+E N+NAMPRSSMEGNRS+TG PT D + NTTD  S+ G
Sbjct: 61  GDAEGDGEGEDGEEQENENEEQERNNNAMPRSSMEGNRSYTGAPTQDRTDNTTDPRSNHG 120

Query: 121 VEPEPNPNPNPPAENQSSILYNS 142
           VEPEPNPNP+P AENQSSIL+NS
Sbjct: 121 VEPEPNPNPDPAAENQSSILFNS 142

[Close]
BLAST of CSPI01G10290 vs. NCBI nr
Match: gi|778664837|ref|XP_011660365.1| (PREDICTED: nucleolin-like [Cucumis sativus])

HSP 1 Score: 273.5 bits (698), Expect = 2.3e-70
Identity = 152/154 (98.70%), Postives = 153/154 (99.35%), Query Frame = 1 

Query: 1   MVSSGQTSHTEDDDISSDSNGEEEPTTPLTPQSPNAPPAAEVVVDIDDGEGDGDQGHGEG 60
           MVSSGQTSHTEDDDISSDSNGEEEPTTPLTPQSPNAPPAAEVVVDIDDGEGDGDQGHGEG
Sbjct: 1   MVSSGQTSHTEDDDISSDSNGEEEPTTPLTPQSPNAPPAAEVVVDIDDGEGDGDQGHGEG 60

Query: 61  EEGEGEDEDEEEQENEDEEEESNSNAMPRSSMEGNRSHTGTPTPDGSHNTTDSSSDDGVE 120
           EEGEGEDEDEEEQENEDEEEESNS+AMPRSSMEGNRSHTGTPTPDGSHNTTDSSSD GVE
Sbjct: 61  EEGEGEDEDEEEQENEDEEEESNSDAMPRSSMEGNRSHTGTPTPDGSHNTTDSSSDGGVE 120

Query: 121 PEPNPNPNPPAENQSSILYNSMFIHSIHLISVPS 155
           PEPNPNPNPPAENQSSILYNSMFIHSIHLISVPS
Sbjct: 121 PEPNPNPNPPAENQSSILYNSMFIHSIHLISVPS 154

[Close]
BLAST of CSPI01G10290 vs. NCBI nr
Match: gi|700209387|gb|KGN64483.1| (hypothetical protein Csa_1G058660 [Cucumis sativus])

HSP 1 Score: 246.9 bits (629), Expect = 2.3e-62
Identity = 138/141 (97.87%), Postives = 140/141 (99.29%), Query Frame = 1 

Query: 1   MVSSGQTSHTEDDDISSDSNGEEEPTTPLTPQSPNAPPAAEVVVDIDDGEGDGDQGHGEG 60
           MVSSGQTSHTEDDDISSDSNGEEEPTTPLTPQSPNAPPAAEVVVDIDDGEGDGDQGHGEG
Sbjct: 1   MVSSGQTSHTEDDDISSDSNGEEEPTTPLTPQSPNAPPAAEVVVDIDDGEGDGDQGHGEG 60

Query: 61  EEGEGEDEDEEEQENEDEEEESNSNAMPRSSMEGNRSHTGTPTPDGSHNTTDSSSDDGVE 120
           EEGEGEDEDEEEQENEDEEEESNS+AMPRSSMEGNRSHTGTPTPDGSHNTTDSSSD GVE
Sbjct: 61  EEGEGEDEDEEEQENEDEEEESNSDAMPRSSMEGNRSHTGTPTPDGSHNTTDSSSDGGVE 120

Query: 121 PEPNPNPNPPAENQSSILYNS 142
           PEPNPNPNPPAENQSSILYN+
Sbjct: 121 PEPNPNPNPPAENQSSILYNT 141

[Close]
BLAST of CSPI01G10290 vs. NCBI nr
Match: gi|659067679|ref|XP_008440732.1| (PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis melo])

HSP 1 Score: 158.7 bits (400), Expect = 8.3e-36
Identity = 102/141 (72.34%), Postives = 118/141 (83.69%), Query Frame = 1 

Query: 1   MVSSGQTSHTEDDDISSDSNGEEEPTTPLTPQSPNAPPAAEVVVDIDDGEGDGDQGHGEG 60
           M SS QTSH+EDDDISS+S+GEEE TTPL+ Q PNAPPA   VVDI D +GD ++G GE 
Sbjct: 1   MASSVQTSHSEDDDISSESSGEEEQTTPLSAQRPNAPPADAYVVDISDEKGD-EEGDGEE 60

Query: 61  EEGEGEDEDEEEQENEDEEEESNSNAMPRSSMEGNRSHTGTPTPDGSHNTTDSSSDDGVE 120
           EE EGEDE+ EEQENEDEEEESN+N++PRSSMEG+RS TG PT D + NTTD  S+ GVE
Sbjct: 61  EE-EGEDENGEEQENEDEEEESNNNSIPRSSMEGSRSSTGAPTQDPTDNTTDPRSNHGVE 120

Query: 121 PEPNPNPNPPAENQSSILYNS 142
           PEPNPNP+PPAENQSSIL+NS
Sbjct: 121 PEPNPNPDPPAENQSSILFNS 139

[Close]
BLAST of CSPI01G10290 vs. NCBI nr
Match: gi|778658335|ref|XP_011652537.1| (PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 7.5e-29
Identity = 96/143 (67.13%), Postives = 113/143 (79.02%), Query Frame = 1 

Query: 1   MVSSGQTSHTEDDDISSDSNGEEEPTTPLTPQSPNAPPA-AEVVVDIDDGEGDGDQGHGE 60
           M SS QTSH++D+DISS+SNGEEE TT  T Q  NAPPA  + VV+I  G GD  +G  E
Sbjct: 1   MESSVQTSHSKDNDISSESNGEEELTTLPTAQRSNAPPADDQFVVNIRAGVGDA-EGDVE 60

Query: 61  GE-EGEGEDEDEEEQENEDEEEESNSNAMPRSSMEGNRSHTGTPTPDGSHNTTDSSSDDG 120
           G+ EG+GE ED EEQENE+EE+E N+NAMPRSSMEGNRS+TG PT D + NTTD  S+ G
Sbjct: 61  GDAEGDGEGEDGEEQENENEEQERNNNAMPRSSMEGNRSYTGAPTQDRTDNTTDPRSNHG 120

Query: 121 VEPEPNPNPNPPAENQSSILYNS 142
           VEPEPNPNP+P AENQSSIL+NS
Sbjct: 121 VEPEPNPNPDPAAENQSSILFNS 142

[Close]
BLAST of CSPI01G10290 vs. NCBI nr
Match: gi|700209390|gb|KGN64486.1| (hypothetical protein Csa_1G059180 [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 7.5e-29
Identity = 96/143 (67.13%), Postives = 113/143 (79.02%), Query Frame = 1 

Query: 1   MVSSGQTSHTEDDDISSDSNGEEEPTTPLTPQSPNAPPA-AEVVVDIDDGEGDGDQGHGE 60
           M SS QTSH++D+DISS+SNGEEE TT  T Q  NAPPA  + VV+I  G GD  +G  E
Sbjct: 1   MESSVQTSHSKDNDISSESNGEEELTTLPTAQRSNAPPADDQFVVNIRAGVGDA-EGDVE 60

Query: 61  GE-EGEGEDEDEEEQENEDEEEESNSNAMPRSSMEGNRSHTGTPTPDGSHNTTDSSSDDG 120
           G+ EG+GE ED EEQENE+EE+E N+NAMPRSSMEGNRS+TG PT D + NTTD  S+ G
Sbjct: 61  GDAEGDGEGEDGEEQENENEEQERNNNAMPRSSMEGNRSYTGAPTQDRTDNTTDPRSNHG 120

Query: 121 VEPEPNPNPNPPAENQSSILYNS 142
           VEPEPNPNP+P AENQSSIL+NS
Sbjct: 121 VEPEPNPNPDPAAENQSSILFNS 142

The following BLAST results are available for this feature:
BLAST of CSPI01G10290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G10290 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRU9_CUCSA1.6e-6297.87Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058660 PE=4 SV=1[more]
A0A0A0LWY1_CUCSA5.2e-2967.13Uncharacterized protein OS=Cucumis sativus GN=Csa_1G059180 PE=4 SV=1[more]
BLAST of CSPI01G10290 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G10290 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778664837|ref|XP_011660365.1|2.3e-7098.70PREDICTED: nucleolin-like [Cucumis sativus][more]
gi|700209387|gb|KGN64483.1|2.3e-6297.87hypothetical protein Csa_1G058660 [Cucumis sativus][more]
gi|659067679|ref|XP_008440732.1|8.3e-3672.34PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis melo][more]
gi|778658335|ref|XP_011652537.1|7.5e-2967.13PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat-containing protein At5g02620-like... [more]
gi|700209390|gb|KGN64486.1|7.5e-2967.13hypothetical protein Csa_1G059180 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G10290.1CSPI01G10290.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 61..81
scor