CsGy1G010190 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G010190
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr1 : 6349167 .. 6351318 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAACATTTTGTTCCTCATTAAATCTGACGCCCTTAATTTTTTCCTGTGTGCATCCAAAAAATTGAGGAGGCAACTAAGACAGTCCACGGCAATAACAAAGTTGAAAGGGGAGATGGGGTCCCTGATAGACCCCTGATAATCCATCAGTATGACAGAAGAAGAAAGAAAGGAATTATCACGAGCATGAGCATGTGATAGGAGTTAGTTACATGTTAGTTACGATTTGTTAGTATAAATAAGAGAGGGGTTGTGAGACGGAAAGGAGTGAGTTTGTTTTATGTTCTTCCTTGAAAGAGAGGGAAACAGAAAAGAAGTTTCTATATTGTACTAGGGTTCCGTTCTATTCTATAATCAATAATATAGTTCTGATTTTATTACAAGTTGGGTTCCATCAGCCCCTATCGAATCCCTCTTGTTTGACTGAATTTTTCCCCTAGATTTGCCATTAATCATGATAGAATACTGTATGCTTGAAATGCAAGACTTGATTCATTTTCTTCATTTGCGGGAGAAGTTTTTTTTCTGTAGCATAAAATCAATGAAGGTCCAATTGATCTTGTCAAGGGTTTTCTCTATGTCAAGCTTAATAAAAAGAAACATTTAGCTTTCTTTATTTTCCCTGCTTCATTTGCGCTATCAGTATAGCATCTGTAATTTGTCTTTCTTTAACAAAGGCCATTTGATTATCTAAGATGGTGACCGATAAGGTTGTTTTGAGTCTTTCTGCTAAAACTTTTGCAATAAGCTTGTATAGGAATGTGGTGAGACTGATCGGTCAATAACCAGATGCTAAAGAGCATTCCTCCTTTGCAATTAGAGCAATGTATGTACTGTTCACAACTTTATTTATGATGCCACTGGAGTGATAGTCTTAAAAATCTCCATGATATTGCCTTTGGTAAATTTCCAAGTGGATTTCATAAATAAATTCCATGATGTATCCATCAGGATTCAGGGCTTTATTGTTTGAGAAAGAATTAAGGGCTTTGTATATCTCCTCTTCAGTAAAAGGTGCGCAAACGTCTTCTTGTGACTTTGATCTGGAGATAGGATTCCATATTAAATTCTCAATAAGCCATATATCTTTGCCTGATATAAATACTTTTATAATGTTCAATAAAAGCGTTTTCTATCTCCTCATCTGTTGTGCATATAGTCCCATAGGCTTTTGAGATGCTAGTTATGAAGCTTCTTCTTTGTCTAGTCGAACAAATTTTACGAAAAAAGGCCGTGTTTTCATCCCCTTCCATATTCCACAATCTTTTACACTTCTGTGCCCAGTTTTGGGCCTTCCTTAAGAGCCATCTGATTCAGGTTGGATTTAATTGCAATTCTGCGCAAGGCATGAAGATCAGTAATCTAATATTCTTCCTCCAATTTGTTAATGGAGTCAATCTCTTTATTACAAGTCTTGTGTTGTCTTGTCTCTTCCCACTATTGTCACTGTCACCGTCCTAATTCAAAATTTTTATCATTACACCCAATTTTTTGATCTTTTTTGGTGTAGCACTATTTCGGTGAGGTTTCGGGTGCCTGTCTTCGGCTTGGTTATTTTTTGATGATGTCCAGCTTTGTGAAACTGCCACATTTCCAATGAACGAGTACTGTTCACTTTCCGGTTTAAACTCATCAAAATTCCTCACTGCTTCACTAGTGAAAGTTCCATGAATTCTTGCATTTCTTTCTTTCATCCATGTTCCATCAGCTTGAGCTACTGTCCGTATCGAAAAGTGGAGCTACTGCAATGTAAGATATAGACCAATTGAAAAAAGTGAAACAATCACATGGGGCTTTTAAAAGCCCACTTTTAACAGTGGAGTTACGGTCCCCATGGTCCCATCTATCGATCTGTTCAACATCAGCTCAATTTTGGTTTATAATTACTTGACAGTGAGAAAAGTAGAAGTCGAAGGATGAAGATGAAGAAACGTATGAGAAAATCAACGAGTTTCCCTTCCATTATTCCAAATTATAATTCATTGTTTGAGGAAAATGAAGATGATCAAGATGAGCGTTCACATACTGCTTGGAACCGACTTGCTGCCACTATGTTTAAAGAGTATGCTCATTTGGAGACGCATGCCAAAGACGCTGATGAACCTTCAGATCATAACTTATTCCAAATTGGTGGTAAAAATTATTACTAA

mRNA sequence

ATGGATGCTAAAGAGCATTCCTCCTTTGCAATTAGAGCAATTGAGAAAAGTAGAAGTCGAAGGATGAAGATGAAGAAACGTATGAGAAAATCAACGAGTTTCCCTTCCATTATTCCAAATTATAATTCATTGTTTGAGGAAAATGAAGATGATCAAGATGAGCGTTCACATACTGCTTGGAACCGACTTGCTGCCACTATGTTTAAAGAGTATGCTCATTTGGAGACGCATGCCAAAGACGCTGATGAACCTTCAGATCATAACTTATTCCAAATTGGTGGTAAAAATTATTACTAA

Coding sequence (CDS)

ATGGATGCTAAAGAGCATTCCTCCTTTGCAATTAGAGCAATTGAGAAAAGTAGAAGTCGAAGGATGAAGATGAAGAAACGTATGAGAAAATCAACGAGTTTCCCTTCCATTATTCCAAATTATAATTCATTGTTTGAGGAAAATGAAGATGATCAAGATGAGCGTTCACATACTGCTTGGAACCGACTTGCTGCCACTATGTTTAAAGAGTATGCTCATTTGGAGACGCATGCCAAAGACGCTGATGAACCTTCAGATCATAACTTATTCCAAATTGGTGGTAAAAATTATTACTAA

Protein sequence

MDAKEHSSFAIRAIEKSRSRRMKMKKRMRKSTSFPSIIPNYNSLFEENEDDQDERSHTAWNRLAATMFKEYAHLETHAKDADEPSDHNLFQIGGKNYY

Homology

[Close]

BLAST of CsGy1G010190 vs. NCBI nr
Match: XP_011652468.1 (PREDICTED: uncharacterized protein LOC101218503 isoform X1 [Cucumis sativus] >KGN64473.1 hypothetical protein Csa_1G058080 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 2.8e-33
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 22 MKMKKRMRKSTSFPSIIPNYNSLFEENEDDQDERSHTAWNRLAATMFKEYAHLETHAKDA 81
          MKMKKRMRKSTSFPSIIPNYNSLFEENEDDQDERSHTAWNRLAATMFKEYAHLETHAKDA
Sbjct: 1  MKMKKRMRKSTSFPSIIPNYNSLFEENEDDQDERSHTAWNRLAATMFKEYAHLETHAKDA 60

Query: 82 DEPSDHNLFQIG 94
          DEPSDHNLFQIG
Sbjct: 61 DEPSDHNLFQIG 72

[Close]

BLAST of CsGy1G010190 vs. NCBI nr
Match: XP_011652476.1 (PREDICTED: uncharacterized protein LOC101218503 isoform X2 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 2.8e-33
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 22 MKMKKRMRKSTSFPSIIPNYNSLFEENEDDQDERSHTAWNRLAATMFKEYAHLETHAKDA 81
          MKMKKRMRKSTSFPSIIPNYNSLFEENEDDQDERSHTAWNRLAATMFKEYAHLETHAKDA
Sbjct: 1  MKMKKRMRKSTSFPSIIPNYNSLFEENEDDQDERSHTAWNRLAATMFKEYAHLETHAKDA 60

Query: 82 DEPSDHNLFQIG 94
          DEPSDHNLFQIG
Sbjct: 61 DEPSDHNLFQIG 72

[Close]

BLAST of CsGy1G010190 vs. TrEMBL
Match: tr|A0A0A0LRT6|A0A0A0LRT6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G058080 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.8e-33
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 22 MKMKKRMRKSTSFPSIIPNYNSLFEENEDDQDERSHTAWNRLAATMFKEYAHLETHAKDA 81
          MKMKKRMRKSTSFPSIIPNYNSLFEENEDDQDERSHTAWNRLAATMFKEYAHLETHAKDA
Sbjct: 1  MKMKKRMRKSTSFPSIIPNYNSLFEENEDDQDERSHTAWNRLAATMFKEYAHLETHAKDA 60

Query: 82 DEPSDHNLFQIG 94
          DEPSDHNLFQIG
Sbjct: 61 DEPSDHNLFQIG 72

The following BLAST results are available for this feature:

BLAST of CsGy1G010190 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652468.1	2.8e-33	100.00	PREDICTED: uncharacterized protein LOC101218503 isoform X1 [Cucumis sativus] >KG...	[more]
XP_011652476.1	2.8e-33	100.00	PREDICTED: uncharacterized protein LOC101218503 isoform X2 [Cucumis sativus]	[more]

BLAST of CsGy1G010190 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G010190 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G010190 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LRT6\|A0A0A0LRT6_CUCSA	1.8e-33	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G058080 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G010190.1	CsGy1G010190.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G010190	Csa1G058080	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G010190	CSPI01G10180	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G010190	MELO3C035733.2	Melon (DHL92) v3.6.1	cgybmedB020
CsGy1G010190	CsaV3_1G010250	Cucumber (Chinese Long) v3	cgybcucB002

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G010190	Wax gourd	cgybwgoB023
CsGy1G010190	Cucurbita maxima (Rimu)	cgybcmaB063
CsGy1G010190	Cucurbita maxima (Rimu)	cgybcmaB093
CsGy1G010190	Cucurbita moschata (Rifu)	cgybcmoB058
CsGy1G010190	Cucurbita moschata (Rifu)	cgybcmoB082
CsGy1G010190	Cucurbita pepo (Zucchini)	cgybcpeB018
CsGy1G010190	Cucurbita pepo (Zucchini)	cgybcpeB080
CsGy1G010190	Bottle gourd (USVL1VR-Ls)	cgyblsiB018
CsGy1G010190	Melon (DHL92) v3.5.1	cgybmeB022
CsGy1G010190	Watermelon (Charleston Gray)	cgybwcgB033
CsGy1G010190	Watermelon (97103) v1	cgybwmB010
CsGy1G010190	Silver-seed gourd	carcgybB0500
CsGy1G010190	Silver-seed gourd	carcgybB0989
CsGy1G010190	Watermelon (97103) v2	cgybwmbB032