CsGy1G004240 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G004240
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	putative F-box protein At1g67623
Location	Chr1 : 2693693 .. 2694688 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGCTTTGGAGTCGTCATGTAATAGTGTCCTTGTAGTTTGTGAATTTTGTAGGGTTTGGTTGCTTTCATACACATTTGCTTAATTTTTTCTCACATACAAATGATTGACTTTTGCTTAAAAGTAATTGTAAATAACTTTTATTATTTTTCTAATAAATTATTTTTGTAAAGTTAGTCTGTAATAAATACTTCATCTCAAAATCTATTATCGTTGTTGTTATTGATTTTATTATTACTAATTTTTCATATAATTTATTACATGCAGAATAACAGAAAAGAATCAAATAGACGTCTTATCTCCAACTGTCATTAAATCACTCCCAAACGATTTATTAACCGAAGTTCTTGCAAAAGTTGCAACTTCTTCTTACATTGACTTGATCCAAGCCAAATTAGCCACCAAACATTTTCTTGAAGCATCTAACGACCGATACATATTTCAACATGCGTCTCTTGGAAACTTCAGGAATCTTCTATGGAACAACAGTCCGAAATTTTGGTCCTTCATGGAAACTTGCAACAATAGTGAAAATCCAGAGAGCCTATATCGAAAAGGAATGTTGGAATTTTTCACTCATTGTAAAGAAGCTTCTGGAATGGCTTATTTAAAACGATCGGCTCAAAAAGGGTATGTGGATGCTTGTTATGTATTTGGTGTTATTTTGTATGCTTCCAATTTGAAAGACGAAGGACTTGAGTTCTTGAAGAACAATGAGGTGAAATTAGGGAATAAAATGATAGAATGTCGTCAGAGAGTTAAGGAGTTCGTATCGTATATTTGGATTAAGAATAAGATTTCGTTGTCGGAGGGAGATTCGTCCTATGGTCGGAAGTGTGATAAAAATATTAACTGTAGGGTTAACGAGAAAATAAATGTTTGGGATTCAAAAGATGAGGATGATTATTATGGAAAGTACACGTGTGAAGAGTGTAAATGGAACAACGAGGTTCTTAGATTTTGTAAAATGTTAAGAACGGGAAGATTTAGTTAA

mRNA sequence

ATGAAGGCTTTGGAGTCAATAACAGAAAAGAATCAAATAGACGTCTTATCTCCAACTGTCATTAAATCACTCCCAAACGATTTATTAACCGAAGTTCTTGCAAAAGTTGCAACTTCTTCTTACATTGACTTGATCCAAGCCAAATTAGCCACCAAACATTTTCTTGAAGCATCTAACGACCGATACATATTTCAACATGCGTCTCTTGGAAACTTCAGGAATCTTCTATGGAACAACAGTCCGAAATTTTGGTCCTTCATGGAAACTTGCAACAATAGTGAAAATCCAGAGAGCCTATATCGAAAAGGAATGTTGGAATTTTTCACTCATTGTAAAGAAGCTTCTGGAATGGCTTATTTAAAACGATCGGCTCAAAAAGGGTATGTGGATGCTTGTTATGTATTTGGTGTTATTTTGTATGCTTCCAATTTGAAAGACGAAGGACTTGAGTTCTTGAAGAACAATGAGGTGAAATTAGGGAATAAAATGATAGAATGTCGTCAGAGAGTTAAGGAGTTCGTATCGTATATTTGGATTAAGAATAAGATTTCGTTGTCGGAGGGAGATTCGTCCTATGGTCGGAAGTGTGATAAAAATATTAACTGTAGGGTTAACGAGAAAATAAATGTTTGGGATTCAAAAGATGAGGATGATTATTATGGAAAGTACACGTGTGAAGAGTGTAAATGGAACAACGAGGTTCTTAGATTTTGTAAAATGTTAAGAACGGGAAGATTTAGTTAA

Coding sequence (CDS)

ATGAAGGCTTTGGAGTCAATAACAGAAAAGAATCAAATAGACGTCTTATCTCCAACTGTCATTAAATCACTCCCAAACGATTTATTAACCGAAGTTCTTGCAAAAGTTGCAACTTCTTCTTACATTGACTTGATCCAAGCCAAATTAGCCACCAAACATTTTCTTGAAGCATCTAACGACCGATACATATTTCAACATGCGTCTCTTGGAAACTTCAGGAATCTTCTATGGAACAACAGTCCGAAATTTTGGTCCTTCATGGAAACTTGCAACAATAGTGAAAATCCAGAGAGCCTATATCGAAAAGGAATGTTGGAATTTTTCACTCATTGTAAAGAAGCTTCTGGAATGGCTTATTTAAAACGATCGGCTCAAAAAGGGTATGTGGATGCTTGTTATGTATTTGGTGTTATTTTGTATGCTTCCAATTTGAAAGACGAAGGACTTGAGTTCTTGAAGAACAATGAGGTGAAATTAGGGAATAAAATGATAGAATGTCGTCAGAGAGTTAAGGAGTTCGTATCGTATATTTGGATTAAGAATAAGATTTCGTTGTCGGAGGGAGATTCGTCCTATGGTCGGAAGTGTGATAAAAATATTAACTGTAGGGTTAACGAGAAAATAAATGTTTGGGATTCAAAAGATGAGGATGATTATTATGGAAAGTACACGTGTGAAGAGTGTAAATGGAACAACGAGGTTCTTAGATTTTGTAAAATGTTAAGAACGGGAAGATTTAGTTAA

Protein sequence

MKALESITEKNQIDVLSPTVIKSLPNDLLTEVLAKVATSSYIDLIQAKLATKHFLEASNDRYIFQHASLGNFRNLLWNNSPKFWSFMETCNNSENPESLYRKGMLEFFTHCKEASGMAYLKRSAQKGYVDACYVFGVILYASNLKDEGLEFLKNNEVKLGNKMIECRQRVKEFVSYIWIKNKISLSEGDSSYGRKCDKNINCRVNEKINVWDSKDEDDYYGKYTCEECKWNNEVLRFCKMLRTGRFS

Homology

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BLAST of CsGy1G004240 vs. NCBI nr
Match: XP_004137554.1 (PREDICTED: putative F-box protein At1g67623 [Cucumis sativus] >KGN63874.1 hypothetical protein Csa_1G025065 [Cucumis sativus])

HSP 1 Score: 450.7 bits (1158), Expect = 3.3e-123
Identity = 227/244 (93.03%), Postives = 228/244 (93.44%), Query Frame = 0


Query: 4   LESITEKNQIDVLSPTVIKSLPNDLLTEVLAKVATSSYIDLXXXXXXXXHFLEASNDRYI 63
           +  ITEKNQIDVLSPTVIKSLPNDLLTEVLA          XXXXXXXX   EASNDRYI
Sbjct: 17  ISRITEKNQIDVLSPTVIKSLPNDLLTEVLAXXXXXXXXXXXXXXXXXXXXXEASNDRYI 76

Query: 64  FQHASLGNFRNLLWNNSPKFWSFMETCNNSENPESLYRKGMLEFFTHCKEASGMAYLKRS 123
           FQH SLGNFRNLLWNNSPKFWSFMETCNNSENPESLYRKGMLEFFTHCKEASGMAYLKRS
Sbjct: 77  FQHVSLGNFRNLLWNNSPKFWSFMETCNNSENPESLYRKGMLEFFTHCKEASGMAYLKRS 136

Query: 124 AQKGYVDACYVFGVILYASNLKDEGLEFLKNNEVKLGNKMIECRQRVKEFVSYIWIKNKI 183
           AQKGYVDACYVFGVILYASNLKDEGLEFLKNNEVKLGNKMIECRQRVKEFVSYIWIKNKI
Sbjct: 137 AQKGYVDACYVFGVILYASNLKDEGLEFLKNNEVKLGNKMIECRQRVKEFVSYIWIKNKI 196

Query: 184 SLSEGDSSYGRKCDKNINCRVNEKINVWDSKDEDDYYGKYTCEECKWNNEVLRFCKMLRT 243
           SLSEGDSSYGRKCDKNINCRVNEKINVWDSKDEDDYYGKYTCEECKWNNEVLRFCKMLRT
Sbjct: 197 SLSEGDSSYGRKCDKNINCRVNEKINVWDSKDEDDYYGKYTCEECKWNNEVLRFCKMLRT 256

Query: 244 GRFS 248
           GRFS
Sbjct: 257 GRFS 260

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BLAST of CsGy1G004240 vs. NCBI nr
Match: XP_008453691.1 (PREDICTED: putative F-box protein At1g67623 [Cucumis melo])

HSP 1 Score: 391.0 bits (1003), Expect = 3.1e-105
Identity = 188/240 (78.33%), Postives = 203/240 (84.58%), Query Frame = 0


Query: 8   TEKNQIDVLSPTVIKSLPNDLLTEVLAKVATSSYIDLXXXXXXXXHFLEASNDRYIFQHA 67
           T+KN+  VLSPTVIKSLPNDLLTEVLAKVA SSY+DL         FLEAS DRYIFQH 
Sbjct: 20  TQKNRTGVLSPTVIKSLPNDLLTEVLAKVAASSYVDLVQAKLATKQFLEASKDRYIFQHV 79

Query: 68  SLGNFRNLLWNNSPKFWSFMETCNNSENPESLYRKGMLEFFTHCKEASGMAYLKRSAQKG 127
           SLGNF N LWNNSP+FWSF+ETCNN+ENPESLYRKGMLEFFTHCKEASG+AYLK SAQKG
Sbjct: 80  SLGNFENHLWNNSPEFWSFIETCNNNENPESLYRKGMLEFFTHCKEASGLAYLKLSAQKG 139

Query: 128 YVDACYVFGVILYASNLKDEGLEFLKNNEVKLGNKMIECRQRVKEFVSYIWIKNKISLSE 187
           YVDACYV  VILYAS  KDEG EFLKN+E KL NKM ECR RVK FVSY+WIKN+IS S 
Sbjct: 140 YVDACYVCSVILYASKAKDEGFEFLKNHEAKLRNKMAECRWRVKRFVSYLWIKNRIS-SS 199

Query: 188 GDSSYGRKCDKNINCRVNEKINVWDSKDEDDYYGKYTCEECKWNNEVLRFCKMLRTGRFS 247
           G+    RKCDKNINCRVNE+ N WD KDEDDYYG+YTCE+CKWNNEV RFCKMLRTGR+S
Sbjct: 200 GEDPNDRKCDKNINCRVNERRNSWDWKDEDDYYGEYTCEKCKWNNEVFRFCKMLRTGRYS 258

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BLAST of CsGy1G004240 vs. NCBI nr
Match: XP_004135532.1 (PREDICTED: putative F-box protein At1g67623 [Cucumis sativus])

HSP 1 Score: 319.7 bits (818), Expect = 8.7e-84
Identity = 159/244 (65.16%), Postives = 189/244 (77.46%), Query Frame = 0


Query: 6   SITEKNQIDVLSPTVIKSLPNDLLTEVLAKVATSSYIDLXXXXXXXXHFLEASNDRYIFQ 65
           S   K      S ++I SLPNDLL EVLAKVA SSYIDL         FL ASND YIFQ
Sbjct: 18  STRTKKMCRPFSSSLIVSLPNDLLIEVLAKVAASSYIDLVQAKLATKLFLHASNDGYIFQ 77

Query: 66  HASLGN--FRNLLWNNSPKFWSFMETCNNSENPESLYRKGMLEFFTHCKEASGMAYLKRS 125
           H SL N  FRNLLWNN+P+  SFMET NN+ENPESLYRKG +EFF+H KEASG++YLK+S
Sbjct: 78  HVSLENKSFRNLLWNNTPQSRSFMETLNNNENPESLYRKGTMEFFSHGKEASGLSYLKQS 137

Query: 126 AQKGYVDACYVFGVILYASNLKDEGLEFLKNNEVKLGNKMIECRQRVKEFVSYIWIKNKI 185
           AQKGYVDACYV+GV++YA+NLK+EG+E+LK  E KLGNKM ECR+RVKEFV Y WIKN+I
Sbjct: 138 AQKGYVDACYVYGVVMYAANLKEEGVEYLKMCEAKLGNKMAECRRRVKEFVWYFWIKNRI 197

Query: 186 SLSEGDSSYGRKCDKNINCRVNEKINVWDSKDEDDYYGKYTCEECKWNNEVLRFCKMLRT 245
           S+S       ++   N+NC+VNE+ N WD KDEDDYYG++TCE+CKW+NEVLRFC MLR 
Sbjct: 198 SMS-------KEICSNVNCKVNERSNGWDWKDEDDYYGEHTCEQCKWSNEVLRFCNMLRR 254

Query: 246 GRFS 248
           G +S
Sbjct: 258 GGYS 254

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BLAST of CsGy1G004240 vs. NCBI nr
Match: XP_023549492.1 (putative F-box protein At1g67623 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 319.3 bits (817), Expect = 1.1e-83
Identity = 153/232 (65.95%), Postives = 181/232 (78.02%), Query Frame = 0


Query: 17  SPTVIKSLPNDLLTEVLAKVATSSYIDLXXXXXXXXHFLEASNDRYIFQHASLGNFRNLL 76
           SP  I+SLPNDLL EVLAKVA SS+ DL         FLEASN  YIFQHASL NF+ LL
Sbjct: 28  SPPTIESLPNDLLIEVLAKVAASSFTDLVQAKLATKKFLEASNHNYIFQHASLENFQKLL 87

Query: 77  WNNSPKFWSFMETCNNSENPESLYRKGMLEFFTHCKEASGMAYLKRSAQKGYVDACYVFG 136
           WNNS +FWSFME CNN+ NPE+LYRKGMLEFFTHC+EASGM YLK SAQKGY DACYV+G
Sbjct: 88  WNNSKEFWSFMEKCNNNGNPETLYRKGMLEFFTHCREASGMTYLKLSAQKGYPDACYVYG 147

Query: 137 VILYASNLKDEGLEFLKNNEVKLGNKMIECRQRVKEFVSYIWIKNKISLSEGDSSYGRKC 196
           +ILY ++++DEG++FLK  E KLG K++ECR+RVKEFV Y+W+KNKIS+ + DSS  R C
Sbjct: 148 IILYTTSMEDEGVKFLKICEAKLGFKLVECRRRVKEFVRYLWVKNKISVPKKDSSDRRGC 207

Query: 197 DKNIN--CRVNEKINVWDSKDEDDYYGKYTCEECKWNNEVLRFCKMLRTGRF 247
           +  I   C+ N +   WD  DEDDYYG++TCE CKWN EVLRFC MLRTG +
Sbjct: 208 ESVIKNCCKKNVRRIGWDWNDEDDYYGEHTCEACKWNGEVLRFCNMLRTGSY 259

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BLAST of CsGy1G004240 vs. NCBI nr
Match: XP_022957262.1 (putative F-box protein At1g67623 [Cucurbita moschata])

HSP 1 Score: 312.8 bits (800), Expect = 1.1e-81
Identity = 152/232 (65.52%), Postives = 177/232 (76.29%), Query Frame = 0


Query: 17  SPTVIKSLPNDLLTEVLAKVATSSYIDLXXXXXXXXHFLEASNDRYIFQHASLGNFRNLL 76
           SP  I+SLPNDLL EVLAKVA  SY DL         FLEAS+  YIFQHASL NF  LL
Sbjct: 7   SPPPIESLPNDLLIEVLAKVAACSYTDLVHAKLATKKFLEASSHNYIFQHASLENFHKLL 66

Query: 77  WNNSPKFWSFMETCNNSENPESLYRKGMLEFFTHCKEASGMAYLKRSAQKGYVDACYVFG 136
           WNNS +FWSFME CNN+ NPE+LYRKGMLEFFTHC+EASGMAYLK SAQKGY DACYV+G
Sbjct: 67  WNNSKEFWSFMEKCNNNGNPETLYRKGMLEFFTHCREASGMAYLKLSAQKGYPDACYVYG 126

Query: 137 VILYASNLKDEGLEFLKNNEVKLGNKMIECRQRVKEFVSYIWIKNKISLSEGDSSYGRKC 196
           +ILYA +++DEG++FLK  E KLG K+ +CR RVKEF+  +W+KNKI + E DSS  R C
Sbjct: 127 IILYAMSMEDEGVKFLKICEAKLGFKLAKCRGRVKEFIYCLWVKNKIYVLENDSSDRRGC 186

Query: 197 DKNIN--CRVNEKINVWDSKDEDDYYGKYTCEECKWNNEVLRFCKMLRTGRF 247
           +  I   C+ N + N WD  DEDDYYG++TCE CKWN EVLRFC MLRTG +
Sbjct: 187 ESVIKNCCKKNVRRNGWDWNDEDDYYGEHTCEACKWNGEVLRFCNMLRTGSY 238

[Close]

BLAST of CsGy1G004240 vs. TAIR10
Match: AT1G67623.1 (F-box family protein)

HSP 1 Score: 83.6 bits (205), Expect = 1.9e-16
Identity = 56/192 (29.17%), Postives = 94/192 (48.96%), Query Frame = 0


Query: 21  IKSLPNDLLTEVLAKVATSSYIDLXXXXXXXXHFLEASNDRYIFQHASLGNFRNLLWN-N 80
           + SLP DLL E+ +    SS   +         F    +++Y+F   SL     L W+ N
Sbjct: 24  LDSLPEDLLVEISSCTGASSLSAVRNLRLVSKSFRRICDEKYVFYRLSLKEIEFLPWHEN 83

Query: 81  SPKFWSFMETCNNSENPESLYRKGMLEFFTHCKEASGMAYLKRSAQKGYVDACYVFGVIL 140
           S K   F+E C  S NPE+L++KG + +F    +  G+ YL  +A+KG  +A YV+GVIL
Sbjct: 84  SAK---FIERCTESRNPEALFQKGFINYFRDKLQDRGLEYLAEAAEKGIKEAKYVYGVIL 143

Query: 141 --YASNLKDEGLEFLKNNEVKL----GNKMIECRQRVKEFVSYIWIKNKISLSEGDSSY- 200
                  K +G E L +   +L     N+++E R ++++     W  +   + +  ++Y 
Sbjct: 144 ICLGGKTKQKGFEILSSVIKQLMSTTMNELVEFRYKIQKIRYGFWWSDNTVVEQLKTAYV 203

Query: 201 GRKCDKNINCRV 205
             KC  +   R+
Sbjct: 204 SEKCKCDCKTRM 212

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BLAST of CsGy1G004240 vs. TAIR10
Match: AT1G74875.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-14
Identity = 58/221 (26.24%), Postives = 102/221 (46.15%), Query Frame = 0


Query: 32  VLAKVATSSYIDLXXXXXXXXHFLEASNDRYIFQHASLGNFRNLLWNNSPKFWSFMETCN 91
           ++  V +SS  +          F   SNDRYI Q  SL     L W N  KF +F + C 
Sbjct: 23  LVINVLSSSLSEFRNLQLVSKSFKRISNDRYILQRLSLNKIPLLPWRNRKKFHNFFKRCR 82

Query: 92  NSENPESLYRKGMLEFF---THCKEAS-GMAYLKRSAQKGYVDACYVFGVIL--YASNLK 151
            S N E++YRKG++++F   +H ++   G+ ++ ++A  G  +A YV+G+IL       K
Sbjct: 83  KSGNLEAIYRKGLVDYFHRDSHERQRDRGLKHIAKTANNGNQEAQYVYGLILICLGGKTK 142

Query: 152 DEGLEFLKN--NEVKLGNKMIECRQRVKEFVSYIWIKNKISLSEGDSSYGRKCDKNINCR 211
             G + L +    + L N + E  ++ +  +  +W   +  +     SY R+     NC 
Sbjct: 143 QNGFKILSSLRKPLMLSNTIKE-MEKHRTHIRNMWWWGEPMMRHLQKSYVRE-----NCN 202

Query: 212 VNEKINVWDS-------KDEDDYYGKYTCEECKWNNEVLRF 238
            + +  ++ +        ++DD      CE C  ++EV  F
Sbjct: 203 CDGRTEIFPNYCFRHRFGEDDDMLTSSACEICLCHHEVKLF 237

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BLAST of CsGy1G004240 vs. Swiss-Prot
Match: sp|Q9FXC7|FB79_ARATH (Putative F-box protein At1g67623 OS=Arabidopsis thaliana OX=3702 GN=At1g67623 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.4e-15
Identity = 56/192 (29.17%), Postives = 94/192 (48.96%), Query Frame = 0


Query: 21  IKSLPNDLLTEVLAKVATSSYIDLXXXXXXXXHFLEASNDRYIFQHASLGNFRNLLWN-N 80
           + SLP DLL E+ +    SS   +         F    +++Y+F   SL     L W+ N
Sbjct: 24  LDSLPEDLLVEISSCTGASSLSAVRNLRLVSKSFRRICDEKYVFYRLSLKEIEFLPWHEN 83

Query: 81  SPKFWSFMETCNNSENPESLYRKGMLEFFTHCKEASGMAYLKRSAQKGYVDACYVFGVIL 140
           S K   F+E C  S NPE+L++KG + +F    +  G+ YL  +A+KG  +A YV+GVIL
Sbjct: 84  SAK---FIERCTESRNPEALFQKGFINYFRDKLQDRGLEYLAEAAEKGIKEAKYVYGVIL 143

Query: 141 --YASNLKDEGLEFLKNNEVKL----GNKMIECRQRVKEFVSYIWIKNKISLSEGDSSY- 200
                  K +G E L +   +L     N+++E R ++++     W  +   + +  ++Y 
Sbjct: 144 ICLGGKTKQKGFEILSSVIKQLMSTTMNELVEFRYKIQKIRYGFWWSDNTVVEQLKTAYV 203

Query: 201 GRKCDKNINCRV 205
             KC  +   R+
Sbjct: 204 SEKCKCDCKTRM 212

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BLAST of CsGy1G004240 vs. TrEMBL
Match: tr|A0A0A0LS96|A0A0A0LS96_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025065 PE=4 SV=1)

HSP 1 Score: 450.7 bits (1158), Expect = 2.2e-123
Identity = 227/244 (93.03%), Postives = 228/244 (93.44%), Query Frame = 0


Query: 4   LESITEKNQIDVLSPTVIKSLPNDLLTEVLAKVATSSYIDLXXXXXXXXHFLEASNDRYI 63
           +  ITEKNQIDVLSPTVIKSLPNDLLTEVLA          XXXXXXXX   EASNDRYI
Sbjct: 17  ISRITEKNQIDVLSPTVIKSLPNDLLTEVLAXXXXXXXXXXXXXXXXXXXXXEASNDRYI 76

Query: 64  FQHASLGNFRNLLWNNSPKFWSFMETCNNSENPESLYRKGMLEFFTHCKEASGMAYLKRS 123
           FQH SLGNFRNLLWNNSPKFWSFMETCNNSENPESLYRKGMLEFFTHCKEASGMAYLKRS
Sbjct: 77  FQHVSLGNFRNLLWNNSPKFWSFMETCNNSENPESLYRKGMLEFFTHCKEASGMAYLKRS 136

Query: 124 AQKGYVDACYVFGVILYASNLKDEGLEFLKNNEVKLGNKMIECRQRVKEFVSYIWIKNKI 183
           AQKGYVDACYVFGVILYASNLKDEGLEFLKNNEVKLGNKMIECRQRVKEFVSYIWIKNKI
Sbjct: 137 AQKGYVDACYVFGVILYASNLKDEGLEFLKNNEVKLGNKMIECRQRVKEFVSYIWIKNKI 196

Query: 184 SLSEGDSSYGRKCDKNINCRVNEKINVWDSKDEDDYYGKYTCEECKWNNEVLRFCKMLRT 243
           SLSEGDSSYGRKCDKNINCRVNEKINVWDSKDEDDYYGKYTCEECKWNNEVLRFCKMLRT
Sbjct: 197 SLSEGDSSYGRKCDKNINCRVNEKINVWDSKDEDDYYGKYTCEECKWNNEVLRFCKMLRT 256

Query: 244 GRFS 248
           GRFS
Sbjct: 257 GRFS 260

[Close]

BLAST of CsGy1G004240 vs. TrEMBL
Match: tr|A0A1S3BXN2|A0A1S3BXN2_CUCME (putative F-box protein At1g67623 OS=Cucumis melo OX=3656 GN=LOC103494339 PE=4 SV=1)

HSP 1 Score: 391.0 bits (1003), Expect = 2.0e-105
Identity = 188/240 (78.33%), Postives = 203/240 (84.58%), Query Frame = 0


Query: 8   TEKNQIDVLSPTVIKSLPNDLLTEVLAKVATSSYIDLXXXXXXXXHFLEASNDRYIFQHA 67
           T+KN+  VLSPTVIKSLPNDLLTEVLAKVA SSY+DL         FLEAS DRYIFQH 
Sbjct: 20  TQKNRTGVLSPTVIKSLPNDLLTEVLAKVAASSYVDLVQAKLATKQFLEASKDRYIFQHV 79

Query: 68  SLGNFRNLLWNNSPKFWSFMETCNNSENPESLYRKGMLEFFTHCKEASGMAYLKRSAQKG 127
           SLGNF N LWNNSP+FWSF+ETCNN+ENPESLYRKGMLEFFTHCKEASG+AYLK SAQKG
Sbjct: 80  SLGNFENHLWNNSPEFWSFIETCNNNENPESLYRKGMLEFFTHCKEASGLAYLKLSAQKG 139

Query: 128 YVDACYVFGVILYASNLKDEGLEFLKNNEVKLGNKMIECRQRVKEFVSYIWIKNKISLSE 187
           YVDACYV  VILYAS  KDEG EFLKN+E KL NKM ECR RVK FVSY+WIKN+IS S 
Sbjct: 140 YVDACYVCSVILYASKAKDEGFEFLKNHEAKLRNKMAECRWRVKRFVSYLWIKNRIS-SS 199

Query: 188 GDSSYGRKCDKNINCRVNEKINVWDSKDEDDYYGKYTCEECKWNNEVLRFCKMLRTGRFS 247
           G+    RKCDKNINCRVNE+ N WD KDEDDYYG+YTCE+CKWNNEV RFCKMLRTGR+S
Sbjct: 200 GEDPNDRKCDKNINCRVNERRNSWDWKDEDDYYGEYTCEKCKWNNEVFRFCKMLRTGRYS 258

[Close]

BLAST of CsGy1G004240 vs. TrEMBL
Match: tr|A0A2C9UP90|A0A2C9UP90_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G015600 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 2.1e-33
Identity = 83/241 (34.44%), Postives = 143/241 (59.34%), Query Frame = 0


Query: 22  KSLPNDLLTEVLAKVATSSYIDLXXXXXXXXHFLEASNDRYIFQHASLGNFRNLLWNNSP 81
           K +P +L+TE+LA+VA+ S  DL         F EA+++ Y+F+H ++ +F  + W  + 
Sbjct: 23  KHVPKELVTEILARVASLSVTDLINAKTSCKEFFEAASEDYVFEHVNITSFPVIPWWINH 82

Query: 82  KFWSFMETCNNSENPESLYRKGMLEFFTHCKEASGMAYLKRSAQKGYVDACYVFGVIL-- 141
              SF+E C  SENPE+L+R+GM+++F+  K  SG+ +LK++A KG+V+A YV+G+IL  
Sbjct: 83  GASSFLERCKKSENPEALFRQGMIDYFSTLKHDSGLKFLKKAASKGHVEATYVYGIILVC 142

Query: 142 YASNLKDEGLEFLKNNEVKLGNKMI-ECRQRVKEFVSYIWIKN---KISLSEGDSSYGRK 201
           Y    +++G++ L + +    + +I ECR++V++ V  +W+KN    I  +E    + +K
Sbjct: 143 YGGKHQNKGVKLLSDLKRSKSSFIITECRRKVQKIVRMMWVKNYIVGIGQTEEKEKFLKK 202

Query: 202 ------CDKNINCRV----NEKINVWDSKDEDDYYGKYTCEECKWNNEVLRFCKMLRTGR 247
                 C+    C +        + W S DED     ++C+ C W+ E ++FCKMLRTG 
Sbjct: 203 RKSCNCCNTKALCSLAGDQTRNYSRWKS-DEDFEDDHFSCDSCLWDLEAMKFCKMLRTGS 262

[Close]

BLAST of CsGy1G004240 vs. TrEMBL
Match: tr|A0A2N9FRX7|A0A2N9FRX7_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17894 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.7e-33
Identity = 89/231 (38.53%), Postives = 133/231 (57.58%), Query Frame = 0


Query: 18  PTVIKSLPNDLLTEVLAKVATSSYIDLXXXXXXXXHFLEASNDRYIFQHASLGNFRNLLW 77
           P  +KSLP +LLTEVL +VA++S+ DL         FLE + D YI Q  SL  F  + +
Sbjct: 18  PPALKSLPKELLTEVLGRVASASFTDLFNAKLSCKDFLEVAEDDYILQQVSLEKFPIIPY 77

Query: 78  NNSPKFWSFMETCNNSENPESLYRKGMLEFFTHCKEASGMAYLKRSAQKGYVDACYVFGV 137
             S +  SF++ C    NPESL+R+G++++F+  ++ SG+ YLKR+A+KG+++A YV+G+
Sbjct: 78  RLSNEESSFLKRCEEFGNPESLFRQGVIDYFSLARKESGLEYLKRAAEKGHLEAIYVYGI 137

Query: 138 ILYAS--NLKDEGLEFLKNNEVKLGNKMIECRQRVKEFVSYIWIKNKISLSEGDSSYGRK 197
           +L  S   LK EGL+ +   +      + ECR+R+K  +  +WI+N I   +   S  RK
Sbjct: 138 VLLCSEGQLKQEGLKIVSCLKSSKSRGLTECRKRIKTVMWDMWIRNSIVKQQALCSNPRK 197

Query: 198 CDKNINCRVNEKINVWDSK----DEDDYYGKYTCEECKWNNEVLRFCKMLR 243
                 C+V +KI  W+S     DEDD      C  C+ N EV  F  MLR
Sbjct: 198 -----PCQVLKKIKGWESSEGELDEDDETD--LCATCRCNCEVTWFSNMLR 241

[Close]

BLAST of CsGy1G004240 vs. TrEMBL
Match: tr|A0A1Q3CLL0|A0A1Q3CLL0_CEPFO (F-box-like domain-containing protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_24605 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.0e-32
Identity = 84/227 (37.00%), Postives = 137/227 (60.35%), Query Frame = 0


Query: 21  IKSLPNDLLTEVLAKVATSSYIDLXXXXXXXXHFLEASNDRYIFQHASLGNFRNLLWNNS 80
           IKSLP++LL EV+++VA+ S  DL         FL A+ + Y+FQH S+  F  + W  +
Sbjct: 1   IKSLPHELLLEVVSRVASLSLYDLLNAKLICKDFLNAAKEDYVFQHVSMDKFPVVPWKLN 60

Query: 81  PKFWSFMETCNNSENPESLYRKGMLEFFTHCKEASGMAYLKRSAQKGYVDACYVFGVI-- 140
            + + F+  C  + N E+LYR+GM E+F++ K+  G+  LK++A+KG+VDA YV+G+I  
Sbjct: 61  EESYLFINRCLENGNAEALYREGMKEYFSYKKQEFGIEKLKKAAEKGHVDASYVYGMISL 120

Query: 141 -LYASNLKDEGLEFLKNNEVKLGNKMIECRQRVKEFVSYIWIKNKISLSEGDSSYGRKCD 200
            L    LK EGL+ L + + + G ++ +CR+RVK F+  +W+ N ++  +G S + + C 
Sbjct: 121 CLGNDGLKQEGLKVLSSFKSR-GFRIKQCRERVKGFLGLLWVNNIVARKQG-SWHAKACS 180

Query: 201 KNINCR--VNEKINVWDSKDEDDYYGKYTCEECKWNNEVLRFCKMLR 243
              N +    E+   W S +E+D     TC+ C W++EV  FC ML+
Sbjct: 181 NRENTKEFPIERKQRWQSSEEEDIIVS-TCDLCLWDHEVDLFCNMLQ 224

The following BLAST results are available for this feature:

BLAST of CsGy1G004240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137554.1	3.3e-123	93.03	PREDICTED: putative F-box protein At1g67623 [Cucumis sativus] >KGN63874.1 hypoth...	[more]
XP_008453691.1	3.1e-105	78.33	PREDICTED: putative F-box protein At1g67623 [Cucumis melo]	[more]
XP_004135532.1	8.7e-84	65.16	PREDICTED: putative F-box protein At1g67623 [Cucumis sativus]	[more]
XP_023549492.1	1.1e-83	65.95	putative F-box protein At1g67623 [Cucurbita pepo subsp. pepo]	[more]
XP_022957262.1	1.1e-81	65.52	putative F-box protein At1g67623 [Cucurbita moschata]	[more]

BLAST of CsGy1G004240 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G67623.1	1.9e-16	29.17	F-box family protein	[more]
AT1G74875.1	1.4e-14	26.24	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of CsGy1G004240 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FXC7\|FB79_ARATH	3.4e-15	29.17	Putative F-box protein At1g67623 OS=Arabidopsis thaliana OX=3702 GN=At1g67623 PE...	[more]

BLAST of CsGy1G004240 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LS96\|A0A0A0LS96_CUCSA	2.2e-123	93.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025065 PE=4 SV=1	[more]
tr\|A0A1S3BXN2\|A0A1S3BXN2_CUCME	2.0e-105	78.33	putative F-box protein At1g67623 OS=Cucumis melo OX=3656 GN=LOC103494339 PE=4 SV...	[more]
tr\|A0A2C9UP90\|A0A2C9UP90_MANES	2.1e-33	34.44	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G015600 PE=4 SV=...	[more]
tr\|A0A2N9FRX7\|A0A2N9FRX7_FAGSY	2.7e-33	38.53	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17894 PE=4 SV=1	[more]
tr\|A0A1Q3CLL0\|A0A1Q3CLL0_CEPFO	1.0e-32	37.00	F-box-like domain-containing protein (Fragment) OS=Cephalotus follicularis OX=37...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G004240.1	CsGy1G004240.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33784	FAMILY NOT NAMED	coord: 8..192

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G004240	CSPI01G04340	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G004240	MELO3C029741.2	Melon (DHL92) v3.6.1	cgybmedB044
CsGy1G004240	CsaV3_1G004340	Cucumber (Chinese Long) v3	cgybcucB002

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G004240	Cucumber (Gy14) v2	cgybcgybB002
CsGy1G004240	Cucurbita maxima (Rimu)	cgybcmaB006
CsGy1G004240	Cucurbita maxima (Rimu)	cgybcmaB029
CsGy1G004240	Cucurbita maxima (Rimu)	cgybcmaB077
CsGy1G004240	Cucurbita maxima (Rimu)	cgybcmaB088
CsGy1G004240	Cucurbita moschata (Rifu)	cgybcmoB007
CsGy1G004240	Cucurbita moschata (Rifu)	cgybcmoB028
CsGy1G004240	Cucurbita moschata (Rifu)	cgybcmoB071
CsGy1G004240	Cucurbita moschata (Rifu)	cgybcmoB086
CsGy1G004240	Cucurbita pepo (Zucchini)	cgybcpeB020
CsGy1G004240	Cucurbita pepo (Zucchini)	cgybcpeB055
CsGy1G004240	Cucurbita pepo (Zucchini)	cgybcpeB073
CsGy1G004240	Cucurbita pepo (Zucchini)	cgybcpeB127
CsGy1G004240	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G004240	Cucumber (Chinese Long) v2	cgybcuB004
CsGy1G004240	Bottle gourd (USVL1VR-Ls)	cgyblsiB021
CsGy1G004240	Bottle gourd (USVL1VR-Ls)	cgyblsiB068
CsGy1G004240	Melon (DHL92) v3.5.1	cgybmeB026
CsGy1G004240	Melon (DHL92) v3.5.1	cgybmeB050
CsGy1G004240	Melon (DHL92) v3.6.1	cgybmedB025
CsGy1G004240	Watermelon (Charleston Gray)	cgybwcgB054
CsGy1G004240	Watermelon (Charleston Gray)	cgybwcgB079
CsGy1G004240	Watermelon (97103) v1	cgybwmB065
CsGy1G004240	Watermelon (97103) v1	cgybwmB095
CsGy1G004240	Wild cucumber (PI 183967)	cgybcpiB003
CsGy1G004240	Silver-seed gourd	carcgybB0394
CsGy1G004240	Silver-seed gourd	carcgybB0594
CsGy1G004240	Silver-seed gourd	carcgybB0778
CsGy1G004240	Cucumber (Chinese Long) v3	cgybcucB004
CsGy1G004240	Watermelon (97103) v2	cgybwmbB054
CsGy1G004240	Watermelon (97103) v2	cgybwmbB077
CsGy1G004240	Wax gourd	cgybwgoB036
CsGy1G004240	Wax gourd	cgybwgoB075